mirror of
https://github.com/agdamsbo/FreesearchR.git
synced 2025-09-12 09:59:39 +02:00
180 lines
19 KiB
HTML
180 lines
19 KiB
HTML
<!DOCTYPE html>
|
||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Title — data-plots • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Title — data-plots"><meta name="description" content="Title
|
||
Wrapper to create plot based on provided type
|
||
Nice horizontal stacked bars (Grotta bars)
|
||
Beatiful violin plot
|
||
Beautiful violin plot
|
||
Beautiful sankey plot with option to split by a tertiary group"><meta property="og:description" content="Title
|
||
Wrapper to create plot based on provided type
|
||
Nice horizontal stacked bars (Grotta bars)
|
||
Beatiful violin plot
|
||
Beautiful violin plot
|
||
Beautiful sankey plot with option to split by a tertiary group"></head><body>
|
||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||
|
||
|
||
<nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
|
||
|
||
<a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
|
||
|
||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
|
||
|
||
|
||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||
<span class="navbar-toggler-icon"></span>
|
||
</button>
|
||
|
||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||
<li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
|
||
<li class="nav-item"><a class="nav-link" href="../QA.html">Q&A</a></li>
|
||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||
</ul></div>
|
||
|
||
|
||
</div>
|
||
</nav><div class="container template-reference-topic">
|
||
<div class="row">
|
||
<main id="main" class="col-md-9"><div class="page-header">
|
||
|
||
<h1>Title</h1>
|
||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/data_plots.R" class="external-link"><code>R/data_plots.R</code></a></small>
|
||
<div class="d-none name"><code>data-plots.Rd</code></div>
|
||
</div>
|
||
|
||
<div class="ref-description section level2">
|
||
<p>Title</p>
|
||
<p>Wrapper to create plot based on provided type</p>
|
||
<p>Nice horizontal stacked bars (Grotta bars)</p>
|
||
<p>Beatiful violin plot</p>
|
||
<p>Beautiful violin plot</p>
|
||
<p>Beautiful sankey plot with option to split by a tertiary group</p>
|
||
</div>
|
||
|
||
<div class="section level2">
|
||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">plot_ridge</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
|
||
<span></span>
|
||
<span><span class="fu">create_plot</span><span class="op">(</span><span class="va">data</span>, <span class="va">type</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">...</span><span class="op">)</span></span>
|
||
<span></span>
|
||
<span><span class="fu">plot_hbars</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
|
||
<span></span>
|
||
<span><span class="fu">plot_violin</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
|
||
<span></span>
|
||
<span><span class="fu">plot_scatter</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
|
||
<span></span>
|
||
<span><span class="fu">plot_sankey</span><span class="op">(</span><span class="va">data</span>, <span class="va">x</span>, <span class="va">y</span>, z <span class="op">=</span> <span class="cn">NULL</span>, color.group <span class="op">=</span> <span class="st">"x"</span>, colors <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
|
||
</div>
|
||
|
||
<div class="section level2">
|
||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||
|
||
|
||
<dl><dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||
<dd><p>ignored for now</p></dd>
|
||
|
||
|
||
<dt id="arg-type">type<a class="anchor" aria-label="anchor" href="#arg-type"></a></dt>
|
||
<dd><p>plot type (derived from possible_plots() and matches custom function)</p></dd>
|
||
|
||
</dl></div>
|
||
<div class="section level2">
|
||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||
<p>ggplot2 object</p>
|
||
<p>ggplot2 object</p>
|
||
<p>ggplot2 object</p>
|
||
<p>ggplot2 object</p>
|
||
<p>ggplot2 object</p>
|
||
<p>ggplot2 object</p>
|
||
</div>
|
||
|
||
<div class="section level2">
|
||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span></span></span>
|
||
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||
<span class="r-in"><span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Picking joint bandwidth of 1.38</span>
|
||
<span class="r-plt img"><img src="data-plots-1.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Picking joint bandwidth of 1.52</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>The following aesthetics were dropped during statistical transformation: <span style="color: #00BB00;">y</span> and</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BB00;">fill</span>.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> This can happen when ggplot fails to infer the correct grouping structure in</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> the data.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Did you forget to specify a `group` aesthetic or to convert a numerical</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> variable into a factor?</span>
|
||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in ggridges::geom_density_ridges():</span> Problem while setting up geom.</span>
|
||
<span class="r-err co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Error occurred in the 1st layer.</span>
|
||
<span class="r-err co"><span class="r-pr">#></span> <span style="font-weight: bold;">Caused by error in `compute_geom_1()`:</span></span>
|
||
<span class="r-err co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> `geom_density_ridges()` requires the following missing aesthetics: <span style="color: #00BB00;">y</span>.</span>
|
||
<span class="r-in"><span><span class="fu">create_plot</span><span class="op">(</span><span class="va">mtcars</span>, <span class="st">"plot_violin"</span>, <span class="st">"mpg"</span>, <span class="st">"cyl"</span><span class="op">)</span></span></span>
|
||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in if (!z %in% names(data)) { z <- NULL}:</span> argument is of length zero</span>
|
||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_hbars</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"carb"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
|
||
<span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_hbars</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"carb"</span>, y <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
|
||
<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_violin</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 1: `cyl = 4`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 1: `cyl = 4`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 2: `cyl = 6`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> In group 2: `cyl = 6`.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> Caused by warning in `stats::qt()`:</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> NaNs produced</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
|
||
<span class="r-wrn co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
|
||
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">plot_scatter</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"wt"</span><span class="op">)</span></span></span>
|
||
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">ds</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>, first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>, last <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
|
||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span><span class="op">)</span></span></span>
|
||
<span class="r-msg co"><span class="r-pr">#></span> Loading required package: ggplot2</span>
|
||
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, color.group <span class="op">=</span> <span class="st">"y"</span><span class="op">)</span></span></span>
|
||
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
|
||
<span class="r-in"><span><span class="va">ds</span> <span class="op">|></span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, z <span class="op">=</span> <span class="st">"g"</span>, color.group <span class="op">=</span> <span class="st">"y"</span><span class="op">)</span></span></span>
|
||
<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
|
||
</code></pre></div>
|
||
</div>
|
||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||
</nav></aside></div>
|
||
|
||
|
||
<footer><div class="pkgdown-footer-left">
|
||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||
</div>
|
||
|
||
<div class="pkgdown-footer-right">
|
||
<p>Developed by Andreas Gammelgaard Damsbo. Provided without <strong>any warranty</strong>.</p>
|
||
</div>
|
||
|
||
</footer></div>
|
||
|
||
|
||
|
||
|
||
|
||
</body></html>
|
||
|