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Andreas Gammelgaard Damsbo 2026-03-12 12:46:31 +01:00
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2
README.md
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@ -62,7 +62,7 @@ If you're working with data in R, **FreesearchR** is a quick and easy tool for e
launch_FreesearchR(INCLUDE_GLOBALENV=TRUE)
```
All the variables specified above can also be passed to the app on launch from R.
All the variables specified above can also be passed to the app on launch from R. Set DATA_LIMIT_UPPER=0 to remove upper data limit. This limit is set to protect the online app version from choking and crashing on large data sets.
### Running with Docker Compose

2
app_docker/Dockerfile
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@ -3,7 +3,7 @@ RUN apt-get update -y && apt-get install -y cmake make libcurl4-openssl-dev lib
RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/
RUN echo "options(renv.config.pak.enabled = FALSE, repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site
RUN R -e 'install.packages("remotes")'
RUN R -e 'remotes::install_version("renv", version = "1.1.7")'
RUN R -e 'remotes::install_version("renv", version = "1.1.8")'
COPY renv.lock renv.lock
RUN --mount=type=cache,id=renv-cache,target=/root/.cache/R/renv R -e 'renv::restore()'
WORKDIR /srv/shiny-server/

2
app_docker/app.R
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@ -1,7 +1,7 @@
########
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpmhqokQ/file1a144d9f4424.R
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpmhqokQ/file1a1412a8be28.R
########
i18n_path <- here::here("translations")

146
app_docker/renv.lock
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@ -2761,7 +2761,7 @@
},
"effectsize": {
"Package": "effectsize",
"Version": "1.0.1",
"Version": "1.0.2",
"Source": "Repository",
"Type": "Package",
"Title": "Indices of Effect Size",
@ -2775,11 +2775,11 @@
"R (>= 4.0)"
],
"Imports": [
"bayestestR (>= 0.16.0)",
"insight (>= 1.3.0)",
"parameters (>= 0.26.0)",
"performance (>= 0.14.0)",
"datawizard (>= 1.1.0)",
"bayestestR (>= 0.17.0)",
"insight (>= 1.4.5)",
"parameters (>= 0.28.3)",
"performance (>= 0.15.3)",
"datawizard (>= 1.3.0)",
"stats",
"utils"
],
@ -2809,7 +2809,7 @@
"VignetteBuilder": "knitr",
"Encoding": "UTF-8",
"Language": "en-US",
"RoxygenNote": "7.3.2",
"RoxygenNote": "7.3.3",
"Config/testthat/edition": "3",
"Config/testthat/parallel": "true",
"Config/Needs/website": "rstudio/bslib, r-lib/pkgdown, easystats/easystatstemplate",
@ -2819,11 +2819,11 @@
},
"emmeans": {
"Package": "emmeans",
"Version": "2.0.1",
"Version": "2.0.2",
"Source": "Repository",
"Type": "Package",
"Title": "Estimated Marginal Means, aka Least-Squares Means",
"Date": "2025-12-10",
"Date": "2026-02-20",
"Authors@R": "c(person(\"Russell V.\", \"Lenth\", role = c(\"aut\", \"cph\"), email = \"russell-lenth@uiowa.edu\"), person(\"Julia\", \"Piaskowski\", role = c(\"cre\", \"aut\"), email = \"julia.piask@gmail.com\"), person(\"Balazs\", \"Banfai\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role = \"ctb\"), person(\"Paul\", \"Buerkner\", role = \"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role = \"ctb\"), person(\"Maxime\", \"Hervé\", role = \"ctb\"), person(\"Maarten\", \"Jung\", role = \"ctb\"), person(\"Jonathon\", \"Love\", role = \"ctb\"), person(\"Fernando\", \"Miguez\", role = \"ctb\"), person(\"Hannes\", \"Riebl\", role = \"ctb\"), person(\"Henrik\", \"Singmann\", role = \"ctb\"))",
"Maintainer": "Julia Piaskowski <julia.piask@gmail.com>",
"Depends": [
@ -2886,7 +2886,7 @@
"sommer",
"survival"
],
"URL": "https://rvlenth.github.io/emmeans/,https://rvlenth.github.io/emmeans/",
"URL": "https://rvlenth.github.io/emmeans/, https://github.com/rvlenth/emmeans/",
"BugReports": "https://github.com/rvlenth/emmeans/issues",
"LazyData": "yes",
"ByteCompile": "yes",
@ -3435,16 +3435,16 @@
},
"fs": {
"Package": "fs",
"Version": "1.6.6",
"Version": "1.6.7",
"Source": "Repository",
"Title": "Cross-Platform File System Operations Based on 'libuv'",
"Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
"Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.",
"License": "MIT + file LICENSE",
"URL": "https://fs.r-lib.org, https://github.com/r-lib/fs",
"BugReports": "https://github.com/r-lib/fs/issues",
"Depends": [
"R (>= 3.6)"
"R (>= 4.1)"
],
"Imports": [
"methods"
@ -3465,14 +3465,15 @@
"ByteCompile": "true",
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Config/usethis/last-upkeep": "2025-04-23",
"Copyright": "file COPYRIGHTS",
"Encoding": "UTF-8",
"Language": "en-US",
"RoxygenNote": "7.2.3",
"RoxygenNote": "7.3.3",
"SystemRequirements": "GNU make",
"NeedsCompilation": "yes",
"Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]",
"Maintainer": "Gábor Csárdi <csardi.gabor@gmail.com>",
"Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
"Maintainer": "Jeroen Ooms <jeroenooms@gmail.com>",
"Repository": "CRAN"
},
"gap": {
@ -3642,7 +3643,7 @@
},
"ggalluvial": {
"Package": "ggalluvial",
"Version": "0.12.5",
"Version": "0.12.6",
"Source": "Repository",
"Type": "Package",
"Title": "Alluvial Plots in 'ggplot2'",
@ -3889,7 +3890,7 @@
},
"ggstats": {
"Package": "ggstats",
"Version": "0.12.0",
"Version": "0.13.0",
"Source": "Repository",
"Type": "Package",
"Title": "Extension to 'ggplot2' for Plotting Stats",
@ -4288,7 +4289,7 @@
},
"highr": {
"Package": "highr",
"Version": "0.11",
"Version": "0.12",
"Source": "Repository",
"Type": "Package",
"Title": "Syntax Highlighting for R Source Code",
@ -4310,9 +4311,9 @@
"BugReports": "https://github.com/yihui/highr/issues",
"VignetteBuilder": "knitr",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"RoxygenNote": "7.3.3",
"NeedsCompilation": "no",
"Author": "Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
"Author": "Yihui Xie [aut, cre] (ORCID: <https://orcid.org/0000-0003-0645-5666>), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]",
"Maintainer": "Yihui Xie <xie@yihui.name>",
"Repository": "CRAN"
},
@ -5041,7 +5042,7 @@
},
"later": {
"Package": "later",
"Version": "1.4.6",
"Version": "1.4.8",
"Source": "Repository",
"Type": "Package",
"Title": "Utilities for Scheduling Functions to Execute Later with Event Loops",
@ -5217,72 +5218,74 @@
},
"lme4": {
"Package": "lme4",
"Version": "1.1-38",
"Version": "2.0-1",
"Source": "Repository",
"Title": "Linear Mixed-Effects Models using 'Eigen' and S4",
"Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )",
"Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Ben\", \"Bolker\", role = c(\"cre\", \"aut\"), email = \"bbolker+lme4@gmail.com\", comment = c(ORCID = \"0000-0002-2127-0443\")), person(\"Steven\", \"Walker\", role = \"aut\", comment = c(ORCID = \"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\", \"Christensen\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4494-3399\")), person(\"Henrik\", \"Singmann\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role = \"ctb\"), person(\"Peter\", \"Green\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role = \"ctb\"), person(\"Alexander\", \"Bauer\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", role = \"ctb\", comment = c(ORCID = \"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"aut\", comment = c(ORCID = \"0000-0002-0210-0342\")))",
"Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".",
"Depends": [
"R (>= 3.6.0)",
"R (>= 3.6)",
"Matrix",
"methods",
"stats"
],
"LinkingTo": [
"Matrix (>= 1.5-0)",
"Rcpp (>= 0.10.5)",
"RcppEigen (>= 0.3.3.9.4)",
"Matrix (>= 1.5-0)"
"RcppEigen (>= 0.3.3.9.4)"
],
"Imports": [
"MASS",
"Rdpack",
"boot",
"graphics",
"grid",
"splines",
"utils",
"parallel",
"MASS",
"lattice",
"boot",
"nlme (>= 3.1-123)",
"minqa (>= 1.1.15)",
"nlme (>= 3.1-123)",
"nloptr (>= 1.0.4)",
"reformulas (>= 0.3.0)",
"parallel",
"reformulas (>= 0.4.3.1)",
"rlang",
"Rdpack"
"splines",
"utils"
],
"RdMacros": "Rdpack",
"Suggests": [
"knitr",
"rmarkdown",
"MEMSS",
"testthat (>= 0.8.1)",
"ggplot2",
"mlmRev",
"optimx (>= 2013.8.6)",
"gamm4",
"pbkrtest",
"HSAUR3",
"numDeriv",
"MEMSS",
"car",
"dfoptim",
"gamm4",
"ggplot2",
"glmmTMB",
"knitr",
"merDeriv",
"mgcv",
"statmod",
"mlmRev",
"numDeriv",
"optimx (>= 2013.8.6)",
"pbkrtest",
"rmarkdown",
"rr2",
"semEff",
"tibble",
"merDeriv"
"statmod",
"testthat (>= 0.8.1)",
"tibble"
],
"Enhances": [
"DHARMa",
"performance"
],
"RdMacros": "Rdpack",
"VignetteBuilder": "knitr",
"LazyData": "yes",
"License": "GPL (>= 2)",
"URL": "https://github.com/lme4/lme4/",
"BugReports": "https://github.com/lme4/lme4/issues",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.3",
"NeedsCompilation": "yes",
"Author": "Douglas Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Ben Bolker [aut, cre] (ORCID: <https://orcid.org/0000-0002-2127-0443>), Steven Walker [aut] (ORCID: <https://orcid.org/0000-0002-4394-9078>), Rune Haubo Bojesen Christensen [ctb] (ORCID: <https://orcid.org/0000-0002-4494-3399>), Henrik Singmann [ctb] (ORCID: <https://orcid.org/0000-0002-4842-3657>), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: <https://orcid.org/0000-0001-8172-3603>), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: <https://orcid.org/0000-0002-0238-9852>), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: <https://orcid.org/0000-0002-9101-3362>, shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: <https://orcid.org/0000-0002-1455-259X>), Mikael Jagan [ctb] (ORCID: <https://orcid.org/0000-0002-3542-2938>), Ross D. Boylan [ctb] (ORCID: <https://orcid.org/0009-0003-4123-8090>), Anna Ly [ctb] (ORCID: <https://orcid.org/0000-0002-0210-0342>)",
"Author": "Douglas Bates [aut] (ORCID: <https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Ben Bolker [cre, aut] (ORCID: <https://orcid.org/0000-0002-2127-0443>), Steven Walker [aut] (ORCID: <https://orcid.org/0000-0002-4394-9078>), Rune Haubo Bojesen Christensen [ctb] (ORCID: <https://orcid.org/0000-0002-4494-3399>), Henrik Singmann [ctb] (ORCID: <https://orcid.org/0000-0002-4842-3657>), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: <https://orcid.org/0000-0001-8172-3603>), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: <https://orcid.org/0000-0002-0238-9852>), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: <https://orcid.org/0000-0002-9101-3362>, shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: <https://orcid.org/0000-0002-1455-259X>), Mikael Jagan [aut] (ORCID: <https://orcid.org/0000-0002-3542-2938>), Ross D. Boylan [ctb] (ORCID: <https://orcid.org/0009-0003-4123-8090>), Anna Ly [aut] (ORCID: <https://orcid.org/0000-0002-0210-0342>)",
"Maintainer": "Ben Bolker <bbolker+lme4@gmail.com>",
"Repository": "CRAN"
},
@ -5672,10 +5675,10 @@
},
"mvtnorm": {
"Package": "mvtnorm",
"Version": "1.3-3",
"Version": "1.3-5",
"Source": "Repository",
"Title": "Multivariate Normal and t Distributions",
"Date": "2025-01-09",
"Date": "2026-03-10",
"Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))",
"Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.",
"Imports": [
@ -5686,12 +5689,13 @@
],
"Suggests": [
"qrng",
"numDeriv"
"numDeriv",
"bibtex"
],
"License": "GPL-2",
"URL": "http://mvtnorm.R-forge.R-project.org",
"NeedsCompilation": "yes",
"Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>), Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>), Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)",
"Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (ORCID: <https://orcid.org/0000-0002-6294-8185>), Martin Maechler [ctb] (ORCID: <https://orcid.org/0000-0002-8685-9910>), Torsten Hothorn [aut, cre] (ORCID: <https://orcid.org/0000-0001-8301-0471>)",
"Maintainer": "Torsten Hothorn <Torsten.Hothorn@R-project.org>",
"Repository": "CRAN"
},
@ -5882,7 +5886,7 @@
},
"openssl": {
"Package": "openssl",
"Version": "2.3.4",
"Version": "2.3.5",
"Source": "Repository",
"Type": "Package",
"Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL",
@ -5915,7 +5919,7 @@
},
"openxlsx2": {
"Package": "openxlsx2",
"Version": "1.23.1",
"Version": "1.25",
"Source": "Repository",
"Type": "Package",
"Title": "Read, Write and Edit 'xlsx' Files",
@ -5942,10 +5946,10 @@
"ggplot2",
"knitr",
"mschart (>= 0.4)",
"openssl",
"rmarkdown",
"rvg",
"testthat (>= 3.0.0)",
"waldo",
"zip"
],
"VignetteBuilder": "knitr",
@ -7089,7 +7093,7 @@
},
"ragg": {
"Package": "ragg",
"Version": "1.5.0",
"Version": "1.5.1",
"Source": "Repository",
"Type": "Package",
"Title": "Graphic Devices Based on AGG",
@ -7118,7 +7122,7 @@
"Config/testthat/edition": "3",
"Config/usethis/last-upkeep": "2025-04-25",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"RoxygenNote": "7.3.3",
"SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux",
"NeedsCompilation": "yes",
"Author": "Thomas Lin Pedersen [cre, aut] (ORCID: <https://orcid.org/0000-0002-5147-4711>), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: <https://ror.org/03wc8by49>)",
@ -7541,7 +7545,7 @@
},
"renv": {
"Package": "renv",
"Version": "1.1.7",
"Version": "1.1.8",
"Source": "Repository",
"Type": "Package",
"Title": "Project Environments",
@ -7585,11 +7589,11 @@
"Encoding": "UTF-8",
"RoxygenNote": "7.3.3",
"VignetteBuilder": "knitr",
"NeedsCompilation": "yes",
"Config/Needs/website": "tidyverse/tidytemplate",
"Config/testthat/edition": "3",
"Config/testthat/parallel": "true",
"Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes",
"NeedsCompilation": "no",
"Author": "Kevin Ushey [aut, cre] (ORCID: <https://orcid.org/0000-0003-2880-7407>), Hadley Wickham [aut] (ORCID: <https://orcid.org/0000-0003-4757-117X>), Posit Software, PBC [cph, fnd]",
"Maintainer": "Kevin Ushey <kevin@rstudio.com>",
"Repository": "CRAN"
@ -8317,7 +8321,7 @@
},
"shinyWidgets": {
"Package": "shinyWidgets",
"Version": "0.9.0",
"Version": "0.9.1",
"Source": "Repository",
"Title": "Custom Inputs Widgets for Shiny",
"Authors@R": "c( person(\"Victor\", \"Perrier\", email = \"victor.perrier@dreamrs.fr\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Fanny\", \"Meyer\", role = \"aut\"), person(\"David\", \"Granjon\", role = \"aut\"), person(\"Ian\", \"Fellows\", role = \"ctb\", comment = \"Methods for mutating vertical tabs & updateMultiInput\"), person(\"Wil\", \"Davis\", role = \"ctb\", comment = \"numericRangeInput function\"), person(\"Spencer\", \"Matthews\", role = \"ctb\", comment = \"autoNumeric methods\"), person(family = \"JavaScript and CSS libraries authors\", role = c(\"ctb\", \"cph\"), comment = \"All authors are listed in LICENSE.md\") )",
@ -8327,7 +8331,7 @@
"License": "GPL-3",
"Encoding": "UTF-8",
"LazyData": "true",
"RoxygenNote": "7.3.2",
"RoxygenNote": "7.3.3",
"Depends": [
"R (>= 3.1.0)"
],
@ -8624,7 +8628,7 @@
},
"systemfonts": {
"Package": "systemfonts",
"Version": "1.3.1",
"Version": "1.3.2",
"Source": "Repository",
"Type": "Package",
"Title": "System Native Font Finding",
@ -8672,7 +8676,7 @@
},
"textshaping": {
"Package": "textshaping",
"Version": "1.0.4",
"Version": "1.0.5",
"Source": "Repository",
"Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping",
"Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
@ -9513,21 +9517,23 @@
},
"xtable": {
"Package": "xtable",
"Version": "1.8-4",
"Version": "1.8-8",
"Source": "Repository",
"Date": "2019-04-08",
"Date": "2026-02-20",
"Title": "Export Tables to LaTeX or HTML",
"Authors@R": "c(person(\"David B.\", \"Dahl\", role=\"aut\"), person(\"David\", \"Scott\", role=c(\"aut\",\"cre\"), email=\"d.scott@auckland.ac.nz\"), person(\"Charles\", \"Roosen\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"), person(\"Jonathan\", \"Swinton\", role=\"aut\"), person(\"Ajay\", \"Shah\", role=\"ctb\"), person(\"Arne\", \"Henningsen\", role=\"ctb\"), person(\"Benno\", \"Puetz\", role=\"ctb\"), person(\"Bernhard\", \"Pfaff\", role=\"ctb\"), person(\"Claudio\", \"Agostinelli\", role=\"ctb\"), person(\"Claudius\", \"Loehnert\", role=\"ctb\"), person(\"David\", \"Mitchell\", role=\"ctb\"), person(\"David\", \"Whiting\", role=\"ctb\"), person(\"Fernando da\", \"Rosa\", role=\"ctb\"), person(\"Guido\", \"Gay\", role=\"ctb\"), person(\"Guido\", \"Schulz\", role=\"ctb\"), person(\"Ian\", \"Fellows\", role=\"ctb\"), person(\"Jeff\", \"Laake\", role=\"ctb\"), person(\"John\", \"Walker\", role=\"ctb\"), person(\"Jun\", \"Yan\", role=\"ctb\"), person(\"Liviu\", \"Andronic\", role=\"ctb\"), person(\"Markus\", \"Loecher\", role=\"ctb\"), person(\"Martin\", \"Gubri\", role=\"ctb\"), person(\"Matthieu\", \"Stigler\", role=\"ctb\"), person(\"Robert\", \"Castelo\", role=\"ctb\"), person(\"Seth\", \"Falcon\", role=\"ctb\"), person(\"Stefan\", \"Edwards\", role=\"ctb\"), person(\"Sven\", \"Garbade\", role=\"ctb\"), person(\"Uwe\", \"Ligges\", role=\"ctb\"))",
"Maintainer": "David Scott <d.scott@auckland.ac.nz>",
"Imports": [
"stats",
"utils"
"utils",
"methods"
],
"Suggests": [
"knitr",
"plm",
"zoo",
"survival"
"survival",
"glue",
"tinytex"
],
"VignetteBuilder": "knitr",
"Description": "Coerce data to LaTeX and HTML tables.",