From 9e2ee1e40290a27d6e53e82dea8ddc74404cdd53 Mon Sep 17 00:00:00 2001 From: Andreas Gammelgaard Damsbo Date: Thu, 12 Mar 2026 12:46:31 +0100 Subject: [PATCH] added docs --- README.md | 2 +- app_docker/Dockerfile | 2 +- app_docker/app.R | 2 +- app_docker/renv.lock | 148 ++++++++++++++++++++++-------------------- 4 files changed, 80 insertions(+), 74 deletions(-) diff --git a/README.md b/README.md index e40c0c41..344b8649 100644 --- a/README.md +++ b/README.md @@ -62,7 +62,7 @@ If you're working with data in R, **FreesearchR** is a quick and easy tool for e launch_FreesearchR(INCLUDE_GLOBALENV=TRUE) ``` -All the variables specified above can also be passed to the app on launch from R. +All the variables specified above can also be passed to the app on launch from R. Set DATA_LIMIT_UPPER=0 to remove upper data limit. This limit is set to protect the online app version from choking and crashing on large data sets. ### Running with Docker Compose diff --git a/app_docker/Dockerfile b/app_docker/Dockerfile index 15d3a400..029da51f 100644 --- a/app_docker/Dockerfile +++ b/app_docker/Dockerfile @@ -3,7 +3,7 @@ RUN apt-get update -y && apt-get install -y cmake make libcurl4-openssl-dev lib RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/ RUN echo "options(renv.config.pak.enabled = FALSE, repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site RUN R -e 'install.packages("remotes")' -RUN R -e 'remotes::install_version("renv", version = "1.1.7")' +RUN R -e 'remotes::install_version("renv", version = "1.1.8")' COPY renv.lock renv.lock RUN --mount=type=cache,id=renv-cache,target=/root/.cache/R/renv R -e 'renv::restore()' WORKDIR /srv/shiny-server/ diff --git a/app_docker/app.R b/app_docker/app.R index 7cb858bb..f50e462a 100644 --- a/app_docker/app.R +++ b/app_docker/app.R @@ -1,7 +1,7 @@ ######## -#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpmhqokQ/file1a144d9f4424.R +#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpmhqokQ/file1a1412a8be28.R ######## i18n_path <- here::here("translations") diff --git a/app_docker/renv.lock b/app_docker/renv.lock index dfbaf8cd..11ae7b52 100644 --- a/app_docker/renv.lock +++ b/app_docker/renv.lock @@ -2761,7 +2761,7 @@ }, "effectsize": { "Package": "effectsize", - "Version": "1.0.1", + "Version": "1.0.2", "Source": "Repository", "Type": "Package", "Title": "Indices of Effect Size", @@ -2775,11 +2775,11 @@ "R (>= 4.0)" ], "Imports": [ - "bayestestR (>= 0.16.0)", - "insight (>= 1.3.0)", - "parameters (>= 0.26.0)", - "performance (>= 0.14.0)", - "datawizard (>= 1.1.0)", + "bayestestR (>= 0.17.0)", + "insight (>= 1.4.5)", + "parameters (>= 0.28.3)", + "performance (>= 0.15.3)", + "datawizard (>= 1.3.0)", "stats", "utils" ], @@ -2809,7 +2809,7 @@ "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/Needs/website": "rstudio/bslib, r-lib/pkgdown, easystats/easystatstemplate", @@ -2819,11 +2819,11 @@ }, "emmeans": { "Package": "emmeans", - "Version": "2.0.1", + "Version": "2.0.2", "Source": "Repository", "Type": "Package", "Title": "Estimated Marginal Means, aka Least-Squares Means", - "Date": "2025-12-10", + "Date": "2026-02-20", "Authors@R": "c(person(\"Russell V.\", \"Lenth\", role = c(\"aut\", \"cph\"), email = \"russell-lenth@uiowa.edu\"), person(\"Julia\", \"Piaskowski\", role = c(\"cre\", \"aut\"), email = \"julia.piask@gmail.com\"), person(\"Balazs\", \"Banfai\", role = \"ctb\"), person(\"Ben\", \"Bolker\", role = \"ctb\"), person(\"Paul\", \"Buerkner\", role = \"ctb\"), person(\"Iago\", \"Giné-Vázquez\", role = \"ctb\"), person(\"Maxime\", \"Hervé\", role = \"ctb\"), person(\"Maarten\", \"Jung\", role = \"ctb\"), person(\"Jonathon\", \"Love\", role = \"ctb\"), person(\"Fernando\", \"Miguez\", role = \"ctb\"), person(\"Hannes\", \"Riebl\", role = \"ctb\"), person(\"Henrik\", \"Singmann\", role = \"ctb\"))", "Maintainer": "Julia Piaskowski ", "Depends": [ @@ -2886,7 +2886,7 @@ "sommer", "survival" ], - "URL": "https://rvlenth.github.io/emmeans/,https://rvlenth.github.io/emmeans/", + "URL": "https://rvlenth.github.io/emmeans/, https://github.com/rvlenth/emmeans/", "BugReports": "https://github.com/rvlenth/emmeans/issues", "LazyData": "yes", "ByteCompile": "yes", @@ -3435,16 +3435,16 @@ }, "fs": { "Package": "fs", - "Version": "1.6.6", + "Version": "1.6.7", "Source": "Repository", "Title": "Cross-Platform File System Operations Based on 'libuv'", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", + "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", role = \"aut\"), person(\"Jeroen\", \"Ooms\", , \"jeroenooms@gmail.com\", role = \"cre\"), person(\"libuv project contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Joyent, Inc. and other Node contributors\", role = \"cph\", comment = \"libuv library\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", "Description": "A cross-platform interface to file system operations, built on top of the 'libuv' C library.", "License": "MIT + file LICENSE", "URL": "https://fs.r-lib.org, https://github.com/r-lib/fs", "BugReports": "https://github.com/r-lib/fs/issues", "Depends": [ - "R (>= 3.6)" + "R (>= 4.1)" ], "Imports": [ "methods" @@ -3465,14 +3465,15 @@ "ByteCompile": "true", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", + "Config/usethis/last-upkeep": "2025-04-23", "Copyright": "file COPYRIGHTS", "Encoding": "UTF-8", "Language": "en-US", - "RoxygenNote": "7.2.3", + "RoxygenNote": "7.3.3", "SystemRequirements": "GNU make", "NeedsCompilation": "yes", - "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut, cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", + "Author": "Jim Hester [aut], Hadley Wickham [aut], Gábor Csárdi [aut], Jeroen Ooms [cre], libuv project contributors [cph] (libuv library), Joyent, Inc. and other Node contributors [cph] (libuv library), Posit Software, PBC [cph, fnd] (ROR: )", + "Maintainer": "Jeroen Ooms ", "Repository": "CRAN" }, "gap": { @@ -3642,7 +3643,7 @@ }, "ggalluvial": { "Package": "ggalluvial", - "Version": "0.12.5", + "Version": "0.12.6", "Source": "Repository", "Type": "Package", "Title": "Alluvial Plots in 'ggplot2'", @@ -3889,7 +3890,7 @@ }, "ggstats": { "Package": "ggstats", - "Version": "0.12.0", + "Version": "0.13.0", "Source": "Repository", "Type": "Package", "Title": "Extension to 'ggplot2' for Plotting Stats", @@ -4288,7 +4289,7 @@ }, "highr": { "Package": "highr", - "Version": "0.11", + "Version": "0.12", "Source": "Repository", "Type": "Package", "Title": "Syntax Highlighting for R Source Code", @@ -4310,9 +4311,9 @@ "BugReports": "https://github.com/yihui/highr/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", + "RoxygenNote": "7.3.3", "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", + "Author": "Yihui Xie [aut, cre] (ORCID: ), Yixuan Qiu [aut], Christopher Gandrud [ctb], Qiang Li [ctb]", "Maintainer": "Yihui Xie ", "Repository": "CRAN" }, @@ -5041,7 +5042,7 @@ }, "later": { "Package": "later", - "Version": "1.4.6", + "Version": "1.4.8", "Source": "Repository", "Type": "Package", "Title": "Utilities for Scheduling Functions to Execute Later with Event Loops", @@ -5217,72 +5218,74 @@ }, "lme4": { "Package": "lme4", - "Version": "1.1-38", + "Version": "2.0-1", "Source": "Repository", "Title": "Linear Mixed-Effects Models using 'Eigen' and S4", - "Authors@R": "c( person(\"Douglas\",\"Bates\", role=\"aut\", comment=c(ORCID=\"0000-0001-8316-9503\")), person(\"Martin\",\"Maechler\", role=\"aut\", comment=c(ORCID=\"0000-0002-8685-9910\")), person(\"Ben\",\"Bolker\",email=\"bbolker+lme4@gmail.com\", role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"Steven\",\"Walker\",role=\"aut\", comment=c(ORCID=\"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\",\"Christensen\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4494-3399\")), person(\"Henrik\",\"Singmann\", role=\"ctb\", comment=c(ORCID=\"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role=\"ctb\"), person(\"Fabian\", \"Scheipl\", role=\"ctb\", comment=c(ORCID=\"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role=\"ctb\"), person(\"Peter\", \"Green\", role=\"ctb\", comment=c(ORCID=\"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role=\"ctb\"), person(\"Alexander\", \"Bauer\", role=\"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role=c(\"ctb\",\"cph\"), comment=c(ORCID=\"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID=\"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"ctb\", comment = c(ORCID=\"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", email=\"ross.boylan@ucsf.edu\", role=(\"ctb\"), comment = c(ORCID=\"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0210-0342\")) )", - "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", + "Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Ben\", \"Bolker\", role = c(\"cre\", \"aut\"), email = \"bbolker+lme4@gmail.com\", comment = c(ORCID = \"0000-0002-2127-0443\")), person(\"Steven\", \"Walker\", role = \"aut\", comment = c(ORCID = \"0000-0002-4394-9078\")), person(\"Rune Haubo Bojesen\", \"Christensen\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4494-3399\")), person(\"Henrik\", \"Singmann\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(\"Bin\", \"Dai\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\", comment = c(ORCID = \"0000-0001-8172-3603\")), person(\"Gabor\", \"Grothendieck\", role = \"ctb\"), person(\"Peter\", \"Green\", role = \"ctb\", comment = c(ORCID = \"0000-0002-0238-9852\")), person(\"John\", \"Fox\", role = \"ctb\"), person(\"Alexander\", \"Bauer\", role = \"ctb\"), person(\"Pavel N.\", \"Krivitsky\", role = c(\"ctb\", \"cph\"), comment = c(ORCID = \"0000-0002-9101-3362\", \"shared copyright on simulate.formula\")), person(\"Emi\", \"Tanaka\", role = \"ctb\", comment = c(ORCID = \"0000-0002-1455-259X\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Ross D.\", \"Boylan\", role = \"ctb\", comment = c(ORCID = \"0009-0003-4123-8090\")), person(\"Anna\", \"Ly\", role = \"aut\", comment = c(ORCID = \"0000-0002-0210-0342\")))", + "Description": "Fit linear and generalized linear mixed-effects models. The models and their components are represented using S4 classes and methods. The core computational algorithms are implemented using the 'Eigen' C++ library for numerical linear algebra and 'RcppEigen' \"glue\".", "Depends": [ - "R (>= 3.6.0)", + "R (>= 3.6)", "Matrix", "methods", "stats" ], "LinkingTo": [ + "Matrix (>= 1.5-0)", "Rcpp (>= 0.10.5)", - "RcppEigen (>= 0.3.3.9.4)", - "Matrix (>= 1.5-0)" + "RcppEigen (>= 0.3.3.9.4)" ], "Imports": [ + "MASS", + "Rdpack", + "boot", "graphics", "grid", - "splines", - "utils", - "parallel", - "MASS", "lattice", - "boot", - "nlme (>= 3.1-123)", "minqa (>= 1.1.15)", + "nlme (>= 3.1-123)", "nloptr (>= 1.0.4)", - "reformulas (>= 0.3.0)", + "parallel", + "reformulas (>= 0.4.3.1)", "rlang", - "Rdpack" + "splines", + "utils" ], - "RdMacros": "Rdpack", "Suggests": [ - "knitr", - "rmarkdown", - "MEMSS", - "testthat (>= 0.8.1)", - "ggplot2", - "mlmRev", - "optimx (>= 2013.8.6)", - "gamm4", - "pbkrtest", "HSAUR3", - "numDeriv", + "MEMSS", "car", "dfoptim", + "gamm4", + "ggplot2", + "glmmTMB", + "knitr", + "merDeriv", "mgcv", - "statmod", + "mlmRev", + "numDeriv", + "optimx (>= 2013.8.6)", + "pbkrtest", + "rmarkdown", "rr2", "semEff", - "tibble", - "merDeriv" + "statmod", + "testthat (>= 0.8.1)", + "tibble" ], "Enhances": [ "DHARMa", "performance" ], + "RdMacros": "Rdpack", "VignetteBuilder": "knitr", "LazyData": "yes", "License": "GPL (>= 2)", "URL": "https://github.com/lme4/lme4/", "BugReports": "https://github.com/lme4/lme4/issues", "Encoding": "UTF-8", + "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", - "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [aut, cre] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [ctb] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [ctb] (ORCID: )", + "Author": "Douglas Bates [aut] (ORCID: ), Martin Maechler [aut] (ORCID: ), Ben Bolker [cre, aut] (ORCID: ), Steven Walker [aut] (ORCID: ), Rune Haubo Bojesen Christensen [ctb] (ORCID: ), Henrik Singmann [ctb] (ORCID: ), Bin Dai [ctb], Fabian Scheipl [ctb] (ORCID: ), Gabor Grothendieck [ctb], Peter Green [ctb] (ORCID: ), John Fox [ctb], Alexander Bauer [ctb], Pavel N. Krivitsky [ctb, cph] (ORCID: , shared copyright on simulate.formula), Emi Tanaka [ctb] (ORCID: ), Mikael Jagan [aut] (ORCID: ), Ross D. Boylan [ctb] (ORCID: ), Anna Ly [aut] (ORCID: )", "Maintainer": "Ben Bolker ", "Repository": "CRAN" }, @@ -5672,10 +5675,10 @@ }, "mvtnorm": { "Package": "mvtnorm", - "Version": "1.3-3", + "Version": "1.3-5", "Source": "Repository", "Title": "Multivariate Normal and t Distributions", - "Date": "2025-01-09", + "Date": "2026-03-10", "Authors@R": "c(person(\"Alan\", \"Genz\", role = \"aut\"), person(\"Frank\", \"Bretz\", role = \"aut\"), person(\"Tetsuhisa\", \"Miwa\", role = \"aut\"), person(\"Xuefei\", \"Mi\", role = \"aut\"), person(\"Friedrich\", \"Leisch\", role = \"ctb\"), person(\"Fabian\", \"Scheipl\", role = \"ctb\"), person(\"Bjoern\", \"Bornkamp\", role = \"ctb\", comment = c(ORCID = \"0000-0002-6294-8185\")), person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"Torsten.Hothorn@R-project.org\", comment = c(ORCID = \"0000-0001-8301-0471\")))", "Description": "Computes multivariate normal and t probabilities, quantiles, random deviates, and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae parameterised by Cholesky factors of covariance or precision matrices are implemented for interval-censored and exact data, or a mix thereof. Score functions for these log-likelihoods are available. A class representing multiple lower triangular matrices and corresponding methods are part of this package.", "Imports": [ @@ -5686,12 +5689,13 @@ ], "Suggests": [ "qrng", - "numDeriv" + "numDeriv", + "bibtex" ], "License": "GPL-2", "URL": "http://mvtnorm.R-forge.R-project.org", "NeedsCompilation": "yes", - "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (), Martin Maechler [ctb] (), Torsten Hothorn [aut, cre] ()", + "Author": "Alan Genz [aut], Frank Bretz [aut], Tetsuhisa Miwa [aut], Xuefei Mi [aut], Friedrich Leisch [ctb], Fabian Scheipl [ctb], Bjoern Bornkamp [ctb] (ORCID: ), Martin Maechler [ctb] (ORCID: ), Torsten Hothorn [aut, cre] (ORCID: )", "Maintainer": "Torsten Hothorn ", "Repository": "CRAN" }, @@ -5882,7 +5886,7 @@ }, "openssl": { "Package": "openssl", - "Version": "2.3.4", + "Version": "2.3.5", "Source": "Repository", "Type": "Package", "Title": "Toolkit for Encryption, Signatures and Certificates Based on OpenSSL", @@ -5915,7 +5919,7 @@ }, "openxlsx2": { "Package": "openxlsx2", - "Version": "1.23.1", + "Version": "1.25", "Source": "Repository", "Type": "Package", "Title": "Read, Write and Edit 'xlsx' Files", @@ -5942,10 +5946,10 @@ "ggplot2", "knitr", "mschart (>= 0.4)", + "openssl", "rmarkdown", "rvg", "testthat (>= 3.0.0)", - "waldo", "zip" ], "VignetteBuilder": "knitr", @@ -7089,7 +7093,7 @@ }, "ragg": { "Package": "ragg", - "Version": "1.5.0", + "Version": "1.5.1", "Source": "Repository", "Type": "Package", "Title": "Graphic Devices Based on AGG", @@ -7118,7 +7122,7 @@ "Config/testthat/edition": "3", "Config/usethis/last-upkeep": "2025-04-25", "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "SystemRequirements": "freetype2, libpng, libtiff, libjpeg, libwebp, libwebpmux", "NeedsCompilation": "yes", "Author": "Thomas Lin Pedersen [cre, aut] (ORCID: ), Maxim Shemanarev [aut, cph] (Author of AGG), Tony Juricic [ctb, cph] (Contributor to AGG), Milan Marusinec [ctb, cph] (Contributor to AGG), Spencer Garrett [ctb] (Contributor to AGG), Posit Software, PBC [cph, fnd] (ROR: )", @@ -7541,7 +7545,7 @@ }, "renv": { "Package": "renv", - "Version": "1.1.7", + "Version": "1.1.8", "Source": "Repository", "Type": "Package", "Title": "Project Environments", @@ -7585,11 +7589,11 @@ "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "VignetteBuilder": "knitr", + "NeedsCompilation": "yes", "Config/Needs/website": "tidyverse/tidytemplate", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "bioconductor,python,install,restore,snapshot,retrieve,remotes", - "NeedsCompilation": "no", "Author": "Kevin Ushey [aut, cre] (ORCID: ), Hadley Wickham [aut] (ORCID: ), Posit Software, PBC [cph, fnd]", "Maintainer": "Kevin Ushey ", "Repository": "CRAN" @@ -8317,7 +8321,7 @@ }, "shinyWidgets": { "Package": "shinyWidgets", - "Version": "0.9.0", + "Version": "0.9.1", "Source": "Repository", "Title": "Custom Inputs Widgets for Shiny", "Authors@R": "c( person(\"Victor\", \"Perrier\", email = \"victor.perrier@dreamrs.fr\", role = c(\"aut\", \"cre\", \"cph\")), person(\"Fanny\", \"Meyer\", role = \"aut\"), person(\"David\", \"Granjon\", role = \"aut\"), person(\"Ian\", \"Fellows\", role = \"ctb\", comment = \"Methods for mutating vertical tabs & updateMultiInput\"), person(\"Wil\", \"Davis\", role = \"ctb\", comment = \"numericRangeInput function\"), person(\"Spencer\", \"Matthews\", role = \"ctb\", comment = \"autoNumeric methods\"), person(family = \"JavaScript and CSS libraries authors\", role = c(\"ctb\", \"cph\"), comment = \"All authors are listed in LICENSE.md\") )", @@ -8327,7 +8331,7 @@ "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", - "RoxygenNote": "7.3.2", + "RoxygenNote": "7.3.3", "Depends": [ "R (>= 3.1.0)" ], @@ -8624,7 +8628,7 @@ }, "systemfonts": { "Package": "systemfonts", - "Version": "1.3.1", + "Version": "1.3.2", "Source": "Repository", "Type": "Package", "Title": "System Native Font Finding", @@ -8672,7 +8676,7 @@ }, "textshaping": { "Package": "textshaping", - "Version": "1.0.4", + "Version": "1.0.5", "Source": "Repository", "Title": "Bindings to the 'HarfBuzz' and 'Fribidi' Libraries for Text Shaping", "Authors@R": "c( person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", @@ -9513,21 +9517,23 @@ }, "xtable": { "Package": "xtable", - "Version": "1.8-4", + "Version": "1.8-8", "Source": "Repository", - "Date": "2019-04-08", + "Date": "2026-02-20", "Title": "Export Tables to LaTeX or HTML", "Authors@R": "c(person(\"David B.\", \"Dahl\", role=\"aut\"), person(\"David\", \"Scott\", role=c(\"aut\",\"cre\"), email=\"d.scott@auckland.ac.nz\"), person(\"Charles\", \"Roosen\", role=\"aut\"), person(\"Arni\", \"Magnusson\", role=\"aut\"), person(\"Jonathan\", \"Swinton\", role=\"aut\"), person(\"Ajay\", \"Shah\", role=\"ctb\"), person(\"Arne\", \"Henningsen\", role=\"ctb\"), person(\"Benno\", \"Puetz\", role=\"ctb\"), person(\"Bernhard\", \"Pfaff\", role=\"ctb\"), person(\"Claudio\", \"Agostinelli\", role=\"ctb\"), person(\"Claudius\", \"Loehnert\", role=\"ctb\"), person(\"David\", \"Mitchell\", role=\"ctb\"), person(\"David\", \"Whiting\", role=\"ctb\"), person(\"Fernando da\", \"Rosa\", role=\"ctb\"), person(\"Guido\", \"Gay\", role=\"ctb\"), person(\"Guido\", \"Schulz\", role=\"ctb\"), person(\"Ian\", \"Fellows\", role=\"ctb\"), person(\"Jeff\", \"Laake\", role=\"ctb\"), person(\"John\", \"Walker\", role=\"ctb\"), person(\"Jun\", \"Yan\", role=\"ctb\"), person(\"Liviu\", \"Andronic\", role=\"ctb\"), person(\"Markus\", \"Loecher\", role=\"ctb\"), person(\"Martin\", \"Gubri\", role=\"ctb\"), person(\"Matthieu\", \"Stigler\", role=\"ctb\"), person(\"Robert\", \"Castelo\", role=\"ctb\"), person(\"Seth\", \"Falcon\", role=\"ctb\"), person(\"Stefan\", \"Edwards\", role=\"ctb\"), person(\"Sven\", \"Garbade\", role=\"ctb\"), person(\"Uwe\", \"Ligges\", role=\"ctb\"))", "Maintainer": "David Scott ", "Imports": [ "stats", - "utils" + "utils", + "methods" ], "Suggests": [ "knitr", - "plm", "zoo", - "survival" + "survival", + "glue", + "tinytex" ], "VignetteBuilder": "knitr", "Description": "Coerce data to LaTeX and HTML tables.",