version bump

2025-09-12 01:49:39 +02:00 · 2025-05-10 11:31:11 +02:00 · 2025-05-10 11:31:11 +02:00 · 91a3f19952
commit 91a3f19952
parent 1b45c3fabf
11 changed files with 24 additions and 12 deletions
--- a/CITATION.cff
+++ b/CITATION.cff
@ -9,7 +9,7 @@ type: software
 license: AGPL-3.0-or-later
 title: 'FreesearchR: A free and open-source browser based data analysis tool for researchers
  with publication ready output'
-version: 25.5.2
+version: 25.5.3
 doi: 10.5281/zenodo.14527429
 identifiers:
 - type: url
--- a/2
+++ b/2
@ -1,6 +1,6 @@
 Package: FreesearchR
 Title: A free and open-source browser based data analysis tool for researchers with publication ready output
-Version: 25.5.2
+Version: 25.5.3
 Authors@R: c(
    person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7559-1154")),
--- a/1
+++ b/1
@ -108,6 +108,7 @@ export(sankey_ready)
 export(selectInputIcon)
 export(set_column_label)
 export(show_data)
+export(simple_snake)
 export(sort_by)
 export(specify_qmd_format)
 export(subset_types)
--- a/NEWS.md
+++ b/NEWS.md
@ -1,3 +1,11 @@
+# FreesearchR 25.5.3
+
+- *FIX* a little polish on the data import
+
+- *FIX* polished REDCap import and new code to reference the `REDCapCAST::easy_redcap()` function.
+
+- *FIX* updated documentation to reflect new private hosting on a Hetzner server in Germany.
+
 # FreesearchR 25.5.2

 - *FIX*: correct export of plots. The solution in the last version broke more than it solved.
--- a/R/app_version.R
+++ b/R/app_version.R
@ -1 +1 @@
-app_version <- function()'25.5.2'
+app_version <- function()'25.5.3'
--- a/R/hosted_version.R
+++ b/R/hosted_version.R
@ -1 +1 @@
-hosted_version <- function()'v25.5.2-250508'
+hosted_version <- function()'v25.5.3-250510'
--- a/R/redcap.R
+++ b/R/redcap.R
--- a/R/sysdata.rda
+++ b/R/sysdata.rda
--- a/README.md
+++ b/README.md
@ -7,9 +7,9 @@
 [![FreesearchR](https://img.shields.io/badge/Shiny-shinyapps.io-blue?style=flat&labelColor=white&logo=RStudio&logoColor=blue)](https://agdamsbo.shinyapps.io/FreesearchR/)
 <!-- badges: end -->

-The [***FreesearchR***](https://agdamsbo.shinyapps.io/FreesearchR/) is a simple, clinical health data exploration and analysis tool to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results.
+The [***FreesearchR***](https://app.freesearchr.org) is a simple, clinical health data exploration and analysis tool to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results.

-[***FreesearchR***](https://agdamsbo.shinyapps.io/FreesearchR/) is free and open-source, and is directly accessible here: [link to the app freely hosted on shinyapps.io](https://agdamsbo.shinyapps.io/FreesearchR/). The app can also run locally, please see below.
+[***FreesearchR***](https://app.freesearchr.org) is free and open-source, and is [accessible in your web browser through this link](https://app.freesearchr.org). The app can also run locally, please see below.

 All feedback is welcome and can be shared as a GitHub issue. Any suggestions on collaboration is much welcomed. Please reach out!

@ -25,7 +25,7 @@ This app has the following simple goals:

 1.   ease quick data overview and basic visualisations for any clinical researcher

-## Run locally on your own machine
+## Run locally on your own machine {#sec-run-locally}

 The ***FreesearchR*** app can also run on your own machine with no data transmitted anywhere. Any data.frame available in the global environment will be accessible from the interface. Just follow the below steps:

--- a/SESSION.md
+++ b/SESSION.md
@ -11,11 +11,11 @@
 |collate     |en_US.UTF-8                                |
 |ctype       |en_US.UTF-8                                |
 |tz          |Europe/Copenhagen                          |
-|date        |2025-05-08                                 |
+|date        |2025-05-10                                 |
 |rstudio     |2024.12.1+563 Kousa Dogwood (desktop)      |
 |pandoc      |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
-|quarto      |1.6.40 @ /usr/local/bin/quarto             |
-|FreesearchR |25.5.2.250508                              |
+|quarto      |1.7.30 @ /usr/local/bin/quarto             |
+|FreesearchR |25.5.3.250510                              |
                                                                                
                                                                                
 --------------------------------------------------------------------------------
@ -38,6 +38,7 @@
 |cachem        |1.1.0         |2024-05-16 |CRAN (R 4.4.1) |
 |cellranger    |1.1.0         |2016-07-27 |CRAN (R 4.4.0) |
 |cffr          |1.2.0         |2025-01-25 |CRAN (R 4.4.1) |
+|checkmate     |2.3.2         |2024-07-29 |CRAN (R 4.4.0) |
 |class         |7.3-23        |2025-01-01 |CRAN (R 4.4.1) |
 |classInt      |0.4-11        |2025-01-08 |CRAN (R 4.4.1) |
 |cli           |3.6.5         |2025-04-23 |CRAN (R 4.4.1) |
@ -77,6 +78,7 @@
 |htmltools     |0.5.8.1       |2024-04-04 |CRAN (R 4.4.1) |
 |htmlwidgets   |1.6.4         |2023-12-06 |CRAN (R 4.4.0) |
 |httpuv        |1.6.16        |2025-04-16 |CRAN (R 4.4.1) |
+|httr          |1.4.7         |2023-08-15 |CRAN (R 4.4.0) |
 |IDEAFilter    |0.2.0         |2024-04-15 |CRAN (R 4.4.0) |
 |insight       |1.2.0         |2025-04-22 |CRAN (R 4.4.1) |
 |jquerylib     |0.1.4         |2021-04-26 |CRAN (R 4.4.0) |
@ -101,7 +103,6 @@
 |nloptr        |2.2.1         |2025-03-17 |CRAN (R 4.4.1) |
 |openssl       |2.3.2         |2025-02-03 |CRAN (R 4.4.1) |
 |openxlsx2     |1.15          |2025-04-25 |CRAN (R 4.4.1) |
-|pak           |0.8.0.2       |2025-04-08 |CRAN (R 4.4.1) |
 |parameters    |0.24.2        |2025-03-04 |CRAN (R 4.4.1) |
 |patchwork     |1.3.0         |2024-09-16 |CRAN (R 4.4.1) |
 |performance   |0.13.0        |2025-01-15 |CRAN (R 4.4.1) |
@ -139,6 +140,7 @@
 |rio           |1.2.3         |2024-09-25 |CRAN (R 4.4.1) |
 |rlang         |1.1.6         |2025-04-11 |CRAN (R 4.4.1) |
 |rmarkdown     |2.29          |2024-11-04 |CRAN (R 4.4.1) |
+|roxygen2      |7.3.2         |2024-06-28 |CRAN (R 4.4.0) |
 |rprojroot     |2.0.4         |2023-11-05 |CRAN (R 4.4.1) |
 |rsconnect     |1.3.4         |2025-01-22 |CRAN (R 4.4.1) |
 |rstudioapi    |0.17.1        |2024-10-22 |CRAN (R 4.4.1) |
@ -152,6 +154,7 @@
 |shinyTime     |1.0.3         |2022-08-19 |CRAN (R 4.4.0) |
 |shinyWidgets  |0.9.0         |2025-02-21 |CRAN (R 4.4.1) |
 |stringi       |1.8.7         |2025-03-27 |CRAN (R 4.4.1) |
+|stringr       |1.5.1         |2023-11-14 |CRAN (R 4.4.0) |
 |styler        |1.10.3        |2024-04-07 |CRAN (R 4.4.0) |
 |tibble        |3.2.1         |2023-03-20 |CRAN (R 4.4.0) |
 |tidyr         |1.3.1         |2024-01-24 |CRAN (R 4.4.1) |
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@ -11,7 +11,7 @@ template:
  # Adding the switch destroys the theme colors
  light-switch: false
  includes:
-    in_header: <script defer src="https://analytics.gdamsbo.dk/script.js" data-website-id="1f3baf18-29aa-4612-931b-58ea35922ae4"></script>
+    in_header: <script defer src="https://stats.freesearchr.org/script.js" data-website-id="85bfd1e8-2cbe-4a4a-aa34-1dfb2960905b"></script>

 navbar:
  bg: primary