diff --git a/CITATION.cff b/CITATION.cff index 29f4814..25ca71c 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -9,7 +9,7 @@ type: software license: AGPL-3.0-or-later title: 'FreesearchR: A free and open-source browser based data analysis tool for researchers with publication ready output' -version: 25.5.2 +version: 25.5.3 doi: 10.5281/zenodo.14527429 identifiers: - type: url diff --git a/DESCRIPTION b/DESCRIPTION index 87cc929..be82a04 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: FreesearchR Title: A free and open-source browser based data analysis tool for researchers with publication ready output -Version: 25.5.2 +Version: 25.5.3 Authors@R: c( person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-7559-1154")), diff --git a/NAMESPACE b/NAMESPACE index 186ab21..e51e611 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -108,6 +108,7 @@ export(sankey_ready) export(selectInputIcon) export(set_column_label) export(show_data) +export(simple_snake) export(sort_by) export(specify_qmd_format) export(subset_types) diff --git a/NEWS.md b/NEWS.md index 0773121..9c02423 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,11 @@ +# FreesearchR 25.5.3 + +- *FIX* a little polish on the data import + +- *FIX* polished REDCap import and new code to reference the `REDCapCAST::easy_redcap()` function. + +- *FIX* updated documentation to reflect new private hosting on a Hetzner server in Germany. + # FreesearchR 25.5.2 - *FIX*: correct export of plots. The solution in the last version broke more than it solved. diff --git a/R/app_version.R b/R/app_version.R index eca6bb3..ba85500 100644 --- a/R/app_version.R +++ b/R/app_version.R @@ -1 +1 @@ -app_version <- function()'25.5.2' +app_version <- function()'25.5.3' diff --git a/R/hosted_version.R b/R/hosted_version.R index 5feb255..9f191af 100644 --- a/R/hosted_version.R +++ b/R/hosted_version.R @@ -1 +1 @@ -hosted_version <- function()'v25.5.2-250508' +hosted_version <- function()'v25.5.3-250510' diff --git a/R/redcap.R b/R/redcap.R deleted file mode 100644 index e69de29..0000000 diff --git a/R/sysdata.rda b/R/sysdata.rda index 57d54ff..1717693 100644 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/README.md b/README.md index 99d8d01..75ca044 100644 --- a/README.md +++ b/README.md @@ -7,9 +7,9 @@ [![FreesearchR](https://img.shields.io/badge/Shiny-shinyapps.io-blue?style=flat&labelColor=white&logo=RStudio&logoColor=blue)](https://agdamsbo.shinyapps.io/FreesearchR/) -The [***FreesearchR***](https://agdamsbo.shinyapps.io/FreesearchR/) is a simple, clinical health data exploration and analysis tool to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results. +The [***FreesearchR***](https://app.freesearchr.org) is a simple, clinical health data exploration and analysis tool to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results. -[***FreesearchR***](https://agdamsbo.shinyapps.io/FreesearchR/) is free and open-source, and is directly accessible here: [link to the app freely hosted on shinyapps.io](https://agdamsbo.shinyapps.io/FreesearchR/). The app can also run locally, please see below. +[***FreesearchR***](https://app.freesearchr.org) is free and open-source, and is [accessible in your web browser through this link](https://app.freesearchr.org). The app can also run locally, please see below. All feedback is welcome and can be shared as a GitHub issue. Any suggestions on collaboration is much welcomed. Please reach out! @@ -25,7 +25,7 @@ This app has the following simple goals: 1. ease quick data overview and basic visualisations for any clinical researcher -## Run locally on your own machine +## Run locally on your own machine {#sec-run-locally} The ***FreesearchR*** app can also run on your own machine with no data transmitted anywhere. Any data.frame available in the global environment will be accessible from the interface. Just follow the below steps: diff --git a/SESSION.md b/SESSION.md index da15186..583ed1c 100644 --- a/SESSION.md +++ b/SESSION.md @@ -11,11 +11,11 @@ |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | -|date |2025-05-08 | +|date |2025-05-10 | |rstudio |2024.12.1+563 Kousa Dogwood (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | -|quarto |1.6.40 @ /usr/local/bin/quarto | -|FreesearchR |25.5.2.250508 | +|quarto |1.7.30 @ /usr/local/bin/quarto | +|FreesearchR |25.5.3.250510 | -------------------------------------------------------------------------------- @@ -38,6 +38,7 @@ |cachem |1.1.0 |2024-05-16 |CRAN (R 4.4.1) | |cellranger |1.1.0 |2016-07-27 |CRAN (R 4.4.0) | |cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) | +|checkmate |2.3.2 |2024-07-29 |CRAN (R 4.4.0) | |class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) | |classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) | |cli |3.6.5 |2025-04-23 |CRAN (R 4.4.1) | @@ -77,6 +78,7 @@ |htmltools |0.5.8.1 |2024-04-04 |CRAN (R 4.4.1) | |htmlwidgets |1.6.4 |2023-12-06 |CRAN (R 4.4.0) | |httpuv |1.6.16 |2025-04-16 |CRAN (R 4.4.1) | +|httr |1.4.7 |2023-08-15 |CRAN (R 4.4.0) | |IDEAFilter |0.2.0 |2024-04-15 |CRAN (R 4.4.0) | |insight |1.2.0 |2025-04-22 |CRAN (R 4.4.1) | |jquerylib |0.1.4 |2021-04-26 |CRAN (R 4.4.0) | @@ -101,7 +103,6 @@ |nloptr |2.2.1 |2025-03-17 |CRAN (R 4.4.1) | |openssl |2.3.2 |2025-02-03 |CRAN (R 4.4.1) | |openxlsx2 |1.15 |2025-04-25 |CRAN (R 4.4.1) | -|pak |0.8.0.2 |2025-04-08 |CRAN (R 4.4.1) | |parameters |0.24.2 |2025-03-04 |CRAN (R 4.4.1) | |patchwork |1.3.0 |2024-09-16 |CRAN (R 4.4.1) | |performance |0.13.0 |2025-01-15 |CRAN (R 4.4.1) | @@ -139,6 +140,7 @@ |rio |1.2.3 |2024-09-25 |CRAN (R 4.4.1) | |rlang |1.1.6 |2025-04-11 |CRAN (R 4.4.1) | |rmarkdown |2.29 |2024-11-04 |CRAN (R 4.4.1) | +|roxygen2 |7.3.2 |2024-06-28 |CRAN (R 4.4.0) | |rprojroot |2.0.4 |2023-11-05 |CRAN (R 4.4.1) | |rsconnect |1.3.4 |2025-01-22 |CRAN (R 4.4.1) | |rstudioapi |0.17.1 |2024-10-22 |CRAN (R 4.4.1) | @@ -152,6 +154,7 @@ |shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) | |shinyWidgets |0.9.0 |2025-02-21 |CRAN (R 4.4.1) | |stringi |1.8.7 |2025-03-27 |CRAN (R 4.4.1) | +|stringr |1.5.1 |2023-11-14 |CRAN (R 4.4.0) | |styler |1.10.3 |2024-04-07 |CRAN (R 4.4.0) | |tibble |3.2.1 |2023-03-20 |CRAN (R 4.4.0) | |tidyr |1.3.1 |2024-01-24 |CRAN (R 4.4.1) | diff --git a/_pkgdown.yml b/_pkgdown.yml index 47ca9e1..7391d30 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -11,7 +11,7 @@ template: # Adding the switch destroys the theme colors light-switch: false includes: - in_header: + in_header: navbar: bg: primary