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reference/data-plots.html
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@ -38,6 +38,8 @@ Beatiful violin plot"></head><body>
<li class="nav-item dropdown">
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/data-types.html">Data types</a></li>
<li><a class="dropdown-item" href="../articles/session.html">Session info</a></li>
<li><a class="dropdown-item" href="../articles/visuals.html">On visuals</a></li>
</ul></li>
<li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
<li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@ -89,7 +91,7 @@ Beatiful violin plot"></head><body>
<span></span>
<span><span class="fu">sankey_ready</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, <span class="va">sec</span>, numbers <span class="op">=</span> <span class="st">"count"</span>, <span class="va">...</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">plot_sankey</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, <span class="va">sec</span>, ter <span class="op">=</span> <span class="cn">NULL</span>, color.group <span class="op">=</span> <span class="st">"x"</span>, colors <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
<span><span class="fu">plot_sankey</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, <span class="va">sec</span>, ter <span class="op">=</span> <span class="cn">NULL</span>, color.group <span class="op">=</span> <span class="st">"pri"</span>, colors <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
<span></span>
<span><span class="fu">plot_scatter</span><span class="op">(</span><span class="va">data</span>, <span class="va">pri</span>, <span class="va">sec</span>, ter <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span>
<span></span>
@ -159,21 +161,23 @@ Beatiful violin plot"></head><body>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-1.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span>,<span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span>,<span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Picking joint bandwidth of 1.38</span>
<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Picking joint bandwidth of 1.52</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>The following aesthetics were dropped during statistical transformation: <span style="color: #00BB00;">y</span> and</span>
@ -252,13 +256,33 @@ Beatiful violin plot"></head><body>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">8</span> c TRUE 7 26 34 <span style="color: #949494;">"</span>c\n(n=26)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>, first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>, last <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in match.arg(color.group):</span> 'arg' should be one of “pri”, “sec”</span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, color.group <span class="op">=</span> <span class="st">"y"</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in match.arg(color.group):</span> 'arg' should be one of “pri”, “sec”</span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, z <span class="op">=</span> <span class="st">"g"</span>, color.group <span class="op">=</span> <span class="st">"y"</span><span class="op">)</span></span></span>
<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in plot_sankey(ds, "first", "last", z = "g", color.group = "y"):</span> unused argument (z = "g")</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Loading required package: ggplot2</span>
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, color.group <span class="op">=</span> <span class="st">"sec"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, ter <span class="op">=</span> <span class="st">"g"</span>, color.group <span class="op">=</span> <span class="st">"sec"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-plt img"><img src="data-plots-9.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"cyl"</span>, <span class="st">"gear"</span>, <span class="st">"am"</span>, color.group <span class="op">=</span> <span class="st">"pri"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-plt img"><img src="data-plots-10.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="co">## In this case, the last plot as the secondary variable in wrong order</span></span></span>
<span class="r-in"><span><span class="co">## Dont know why...</span></span></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"cyl"</span>, <span class="st">"gear"</span>, <span class="st">"vs"</span>, color.group <span class="op">=</span> <span class="st">"pri"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
<span class="r-plt img"><img src="data-plots-11.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_scatter</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"wt"</span><span class="op">)</span></span></span>
<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-12.png" alt="" width="700" height="433"></span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_violin</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>There was 1 warning in `summarize()`.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`.</span>
@ -292,7 +316,7 @@ Beatiful violin plot"></head><body>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Groups with fewer than two datapoints have been dropped.</span>
<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">ℹ</span> Set `drop = FALSE` to consider such groups for position adjustment purposes.</span>
<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
<span class="r-plt img"><img src="data-plots-13.png" alt="" width="700" height="433"></span>
</code></pre></div>
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