From a11c759487e037a294877d79bcc028f8290eef92 Mon Sep 17 00:00:00 2001
From: Andreas Gammelgaard Damsbo <andreas@gdamsbo.dk>
Date: Thu, 10 Oct 2024 13:26:23 +0200
Subject: [PATCH] rhub init

---
 .github/workflows/rhub.yaml | 95 +++++++++++++++++++++++++++++++++++++
 renv.lock                   | 78 ------------------------------
 2 files changed, 95 insertions(+), 78 deletions(-)
 create mode 100644 .github/workflows/rhub.yaml

diff --git a/.github/workflows/rhub.yaml b/.github/workflows/rhub.yaml
new file mode 100644
index 0000000..74ec7b0
--- /dev/null
+++ b/.github/workflows/rhub.yaml
@@ -0,0 +1,95 @@
+# R-hub's generic GitHub Actions workflow file. It's canonical location is at
+# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml
+# You can update this file to a newer version using the rhub2 package:
+#
+# rhub::rhub_setup()
+#
+# It is unlikely that you need to modify this file manually.
+
+name: R-hub
+run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}"
+
+on:
+  workflow_dispatch:
+    inputs:
+      config:
+        description: 'A comma separated list of R-hub platforms to use.'
+        type: string
+        default: 'linux,windows,macos'
+      name:
+        description: 'Run name. You can leave this empty now.'
+        type: string
+      id:
+        description: 'Unique ID. You can leave this empty now.'
+        type: string
+
+jobs:
+
+  setup:
+    runs-on: ubuntu-latest
+    outputs:
+      containers: ${{ steps.rhub-setup.outputs.containers }}
+      platforms: ${{ steps.rhub-setup.outputs.platforms }}
+
+    steps:
+    # NO NEED TO CHECKOUT HERE
+    - uses: r-hub/actions/setup@v1
+      with:
+        config: ${{ github.event.inputs.config }}
+      id: rhub-setup
+
+  linux-containers:
+    needs: setup
+    if: ${{ needs.setup.outputs.containers != '[]' }}
+    runs-on: ubuntu-latest
+    name: ${{ matrix.config.label }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config: ${{ fromJson(needs.setup.outputs.containers) }}
+    container:
+      image: ${{ matrix.config.container }}
+
+    steps:
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/run-check@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+
+  other-platforms:
+    needs: setup
+    if: ${{ needs.setup.outputs.platforms != '[]' }}
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.label }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config: ${{ fromJson(needs.setup.outputs.platforms) }}
+
+    steps:
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/setup-r@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/run-check@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
diff --git a/renv.lock b/renv.lock
index 66176d9..f2cdbe9 100644
--- a/renv.lock
+++ b/renv.lock
@@ -76,19 +76,6 @@
       ],
       "Hash": "42ce9ee4c1cf168869f4386d2cdeadd2"
     },
-    "ROI.plugin.symphony": {
-      "Package": "ROI.plugin.symphony",
-      "Version": "1.0-0",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "ROI",
-        "Rsymphony",
-        "methods",
-        "slam"
-      ],
-      "Hash": "0d5d6f983334cf25a47eef4b293fb299"
-    },
     "Rcpp": {
       "Package": "Rcpp",
       "Version": "1.0.13",
@@ -100,16 +87,6 @@
       ],
       "Hash": "f27411eb6d9c3dada5edd444b8416675"
     },
-    "Rsymphony": {
-      "Package": "Rsymphony",
-      "Version": "0.1-33",
-      "Source": "Repository",
-      "Repository": "RSPM",
-      "Requirements": [
-        "R"
-      ],
-      "Hash": "3f55239fe534fe91e739c77d99a4ffbf"
-    },
     "assertthat": {
       "Package": "assertthat",
       "Version": "0.2.1",
@@ -736,21 +713,6 @@
       ],
       "Hash": "434cd5388a3979e74be5c219bcd6e77d"
     },
-    "purrr": {
-      "Package": "purrr",
-      "Version": "1.0.2",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "cli",
-        "lifecycle",
-        "magrittr",
-        "rlang",
-        "vctrs"
-      ],
-      "Hash": "1cba04a4e9414bdefc9dcaa99649a8dc"
-    },
     "rappdirs": {
       "Package": "rappdirs",
       "Version": "0.3.3",
@@ -918,23 +880,6 @@
       ],
       "Hash": "39e1144fd75428983dc3f63aa53dfa91"
     },
-    "stringr": {
-      "Package": "stringr",
-      "Version": "1.5.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "cli",
-        "glue",
-        "lifecycle",
-        "magrittr",
-        "rlang",
-        "stringi",
-        "vctrs"
-      ],
-      "Hash": "960e2ae9e09656611e0b8214ad543207"
-    },
     "tibble": {
       "Package": "tibble",
       "Version": "3.2.1",
@@ -954,29 +899,6 @@
       ],
       "Hash": "a84e2cc86d07289b3b6f5069df7a004c"
     },
-    "tidyr": {
-      "Package": "tidyr",
-      "Version": "1.3.1",
-      "Source": "Repository",
-      "Repository": "CRAN",
-      "Requirements": [
-        "R",
-        "cli",
-        "cpp11",
-        "dplyr",
-        "glue",
-        "lifecycle",
-        "magrittr",
-        "purrr",
-        "rlang",
-        "stringr",
-        "tibble",
-        "tidyselect",
-        "utils",
-        "vctrs"
-      ],
-      "Hash": "915fb7ce036c22a6a33b5a8adb712eb1"
-    },
     "tidyselect": {
       "Package": "tidyselect",
       "Version": "1.2.1",