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20 changed files with 29 additions and 72 deletions
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@ -54,14 +54,14 @@
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<h2 id="citation">Citation</h2>
|
||||
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
|
||||
|
||||
<p>Damsbo A, Egeler P (2026).
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||||
<p>Damsbo A, Egeler P (2025).
|
||||
<em>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling</em>.
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||||
R package version 25.11.1, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
|
||||
</p>
|
||||
<pre>@Manual{,
|
||||
title = {REDCapCAST: REDCap Metadata Casting and Castellated Data Handling},
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||||
author = {Andreas Gammelgaard Damsbo and Paul Egeler},
|
||||
year = {2026},
|
||||
year = {2025},
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||||
note = {R package version 25.11.1},
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||||
url = {https://github.com/agdamsbo/REDCapCAST},
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||||
}</pre>
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|
|
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@ -12,14 +12,14 @@
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|||
Source:
|
||||
[`DESCRIPTION`](https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION)
|
||||
|
||||
Damsbo A, Egeler P (2026). *REDCapCAST: REDCap Metadata Casting and
|
||||
Damsbo A, Egeler P (2025). *REDCapCAST: REDCap Metadata Casting and
|
||||
Castellated Data Handling*. R package version 25.11.1,
|
||||
<https://github.com/agdamsbo/REDCapCAST>.
|
||||
|
||||
@Manual{,
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||||
title = {REDCapCAST: REDCap Metadata Casting and Castellated Data Handling},
|
||||
author = {Andreas Gammelgaard Damsbo and Paul Egeler},
|
||||
year = {2026},
|
||||
year = {2025},
|
||||
note = {R package version 25.11.1},
|
||||
url = {https://github.com/agdamsbo/REDCapCAST},
|
||||
}
|
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|
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llms.txt
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llms.txt
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@ -119,7 +119,7 @@ contributing to this project, you agree to abide by its terms.
|
|||
- [`create_html_table()`](https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.md)
|
||||
: Create two-column HTML table for data piping in REDCap instruments
|
||||
- [`create_instrument_meta()`](https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.md)
|
||||
: DEPRECATED Create zips file with necessary content based on data set
|
||||
: DEPRICATED Create zips file with necessary content based on data set
|
||||
- [`cut_string_length()`](https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.md)
|
||||
: Cut string to desired length
|
||||
- [`d2w()`](https://agdamsbo.github.io/REDCapCAST/reference/d2w.md) :
|
||||
|
|
|
|||
|
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@ -38,18 +38,10 @@
|
|||
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
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||||
<h2 class="pkg-version" data-toc-text="26.1.1" id="redcapcast-2611">REDCapCAST 26.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2611"></a></h2>
|
||||
<p>25.11.1 was never pushed to CRAN, so this fills in for that.</p>
|
||||
<ul><li><p>FIX: spelling</p></li>
|
||||
<li><p>FIX: Suggested dependencies were trimmed including {styler}.</p></li>
|
||||
<li><p>FIX: export_redcap_instrument was updated to include default file name for the instrument zip. Ensures custom names has correct file extension.</p></li>
|
||||
</ul></div>
|
||||
<div class="section level2">
|
||||
<h2 class="pkg-version" data-toc-text="25.11.1" id="redcapcast-25111">REDCapCAST 25.11.1<a class="anchor" aria-label="anchor" href="#redcapcast-25111"></a></h2>
|
||||
<ul><li><p>FIX: logicals exported as numeric for data upload</p></li>
|
||||
<ul><li><p>FIX: logiccals exported as numeric for data upload</p></li>
|
||||
<li><p>FIX: improved name cleaning</p></li>
|
||||
<li><p>FIX: use the more robust readr::write_csv() to export data.</p></li>
|
||||
</ul></div>
|
||||
<div class="section level2">
|
||||
<h2 class="pkg-version" data-toc-text="25.3.2" id="redcapcast-2532">REDCapCAST 25.3.2<a class="anchor" aria-label="anchor" href="#redcapcast-2532"></a></h2><p class="text-muted">CRAN release: 2025-03-10</p>
|
||||
|
|
|
|||
|
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@ -1,25 +1,11 @@
|
|||
# Changelog
|
||||
|
||||
## REDCapCAST 26.1.1
|
||||
|
||||
25.11.1 was never pushed to CRAN, so this fills in for that.
|
||||
|
||||
- FIX: spelling
|
||||
|
||||
- FIX: Suggested dependencies were trimmed including {styler}.
|
||||
|
||||
- FIX: export_redcap_instrument was updated to include default file name
|
||||
for the instrument zip. Ensures custom names has correct file
|
||||
extension.
|
||||
|
||||
## REDCapCAST 25.11.1
|
||||
|
||||
- FIX: logicals exported as numeric for data upload
|
||||
- FIX: logiccals exported as numeric for data upload
|
||||
|
||||
- FIX: improved name cleaning
|
||||
|
||||
- FIX: use the more robust readr::write_csv() to export data.
|
||||
|
||||
## REDCapCAST 25.3.2
|
||||
|
||||
CRAN release: 2025-03-10
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ articles:
|
|||
Database-creation: Database-creation.html
|
||||
REDCapCAST: REDCapCAST.html
|
||||
Shiny-app: Shiny-app.html
|
||||
last_built: 2026-01-28T21:50Z
|
||||
last_built: 2025-11-14T14:10Z
|
||||
urls:
|
||||
reference: https://agdamsbo.github.io/REDCapCAST/reference
|
||||
article: https://agdamsbo.github.io/REDCapCAST/articles
|
||||
|
|
|
|||
|
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@ -71,8 +71,6 @@ Trying to make up for different naming conventions.</p>
|
|||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"Research!, ne:ws? and c;l-.ls"</span> <span class="op">|></span> <span class="fu">clean_redcap_name</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "research_news_and_clls"</span>
|
||||
<span class="r-in"><span><span class="st">"8_new_TEST_"</span> <span class="op">|></span> <span class="fu">clean_redcap_name</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "8_new_test"</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
|
|
|
|||
|
|
@ -25,6 +25,4 @@ vector or data frame, same format as input
|
|||
``` r
|
||||
"Research!, ne:ws? and c;l-.ls" |> clean_redcap_name()
|
||||
#> [1] "research_news_and_clls"
|
||||
"8_new_TEST_" |> clean_redcap_name()
|
||||
#> [1] "8_new_test"
|
||||
```
|
||||
|
|
|
|||
|
|
@ -1,10 +1,8 @@
|
|||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en-US"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRECATED Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="96x96" href="../favicon-96x96.png"><link rel="icon" type="”image/svg+xml”" href="../favicon.svg"><link rel="apple-touch-icon" sizes="180x180" href="../apple-touch-icon.png"><link rel="icon" sizes="any" href="../favicon.ico"><link rel="manifest" href="../site.webmanifest"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRECATED Create zips file with necessary content based on data set — create_instrument_meta"><meta name="description" content="Use export_redcap_instrument()
|
||||
Metadata can be added by editing the data dictionary of a project in the
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en-US"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="96x96" href="../favicon-96x96.png"><link rel="icon" type="”image/svg+xml”" href="../favicon.svg"><link rel="apple-touch-icon" sizes="180x180" href="../apple-touch-icon.png"><link rel="icon" sizes="any" href="../favicon.ico"><link rel="manifest" href="../site.webmanifest"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta"><meta name="description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production."><meta property="og:description" content="Use export_redcap_instrument()
|
||||
Metadata can be added by editing the data dictionary of a project in the
|
||||
production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production."></head><body>
|
||||
|
|
@ -42,14 +40,13 @@ production."></head><body>
|
|||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
|
||||
<h1>DEPRECATED Create zips file with necessary content based on data set</h1>
|
||||
<h1>DEPRICATED Create zips file with necessary content based on data set</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
|
||||
<div class="d-none name"><code>create_instrument_meta.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Use export_redcap_instrument()
|
||||
Metadata can be added by editing the data dictionary of a project in the
|
||||
<p>Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production.</p>
|
||||
|
|
|
|||
|
|
@ -1,9 +1,9 @@
|
|||
# DEPRECATED Create zips file with necessary content based on data set
|
||||
# DEPRICATED Create zips file with necessary content based on data set
|
||||
|
||||
Use export_redcap_instrument() Metadata can be added by editing the data
|
||||
dictionary of a project in the initial design phase. If you want to
|
||||
later add new instruments, this function can be used to create (an)
|
||||
instrument(s) to add to a project in production.
|
||||
Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production.
|
||||
|
||||
## Usage
|
||||
|
||||
|
|
|
|||
|
|
@ -67,7 +67,7 @@
|
|||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"length"</span> <span class="op">|></span> <span class="fu">cut_string_length</span><span class="op">(</span>l <span class="op">=</span> <span class="fl">3</span><span class="op">)</span></span></span>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"length"</span> <span class="op">|></span> <span class="fu">cut_string_length</span><span class="op">(</span>l<span class="op">=</span><span class="fl">3</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "len"</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
|
|
|||
|
|
@ -25,6 +25,6 @@ character string of length l
|
|||
## Examples
|
||||
|
||||
``` r
|
||||
"length" |> cut_string_length(l = 3)
|
||||
"length" |> cut_string_length(l=3)
|
||||
#> [1] "len"
|
||||
```
|
||||
|
|
|
|||
|
|
@ -54,12 +54,7 @@ production.</p>
|
|||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">export_redcap_instrument</span><span class="op">(</span></span>
|
||||
<span> <span class="va">data</span>,</span>
|
||||
<span> file <span class="op">=</span> <span class="fu">here</span><span class="fu">::</span><span class="fu"><a href="https://here.r-lib.org/reference/here.html" class="external-link">here</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">"instrument_"</span>, <span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span>, <span class="st">".zip"</span><span class="op">)</span><span class="op">)</span>,</span>
|
||||
<span> force <span class="op">=</span> <span class="cn">FALSE</span>,</span>
|
||||
<span> record.id <span class="op">=</span> <span class="st">"record_id"</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">export_redcap_instrument</span><span class="op">(</span><span class="va">data</span>, <span class="va">file</span>, force <span class="op">=</span> <span class="cn">FALSE</span>, record.id <span class="op">=</span> <span class="st">"record_id"</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
|
|
|
|||
|
|
@ -8,12 +8,7 @@ production.
|
|||
## Usage
|
||||
|
||||
``` r
|
||||
export_redcap_instrument(
|
||||
data,
|
||||
file = here::here(paste0("instrument_", Sys.Date(), ".zip")),
|
||||
force = FALSE,
|
||||
record.id = "record_id"
|
||||
)
|
||||
export_redcap_instrument(data, file, force = FALSE, record.id = "record_id")
|
||||
```
|
||||
|
||||
## Arguments
|
||||
|
|
|
|||
|
|
@ -157,7 +157,7 @@
|
|||
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>DEPRECATED Create zips file with necessary content based on data set</dd>
|
||||
<dd>DEPRICATED Create zips file with necessary content based on data set</dd>
|
||||
|
||||
<dt>
|
||||
|
||||
|
|
|
|||
|
|
@ -36,7 +36,7 @@
|
|||
- [`create_html_table()`](https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.md)
|
||||
: Create two-column HTML table for data piping in REDCap instruments
|
||||
- [`create_instrument_meta()`](https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.md)
|
||||
: DEPRECATED Create zips file with necessary content based on data set
|
||||
: DEPRICATED Create zips file with necessary content based on data set
|
||||
- [`cut_string_length()`](https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.md)
|
||||
: Cut string to desired length
|
||||
- [`d2w()`](https://agdamsbo.github.io/REDCapCAST/reference/d2w.md) :
|
||||
|
|
|
|||
|
|
@ -82,10 +82,8 @@ easing the split around the defined delimiter, see example.</p>
|
|||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">test</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> <span class="st">"12 months follow-up"</span>, <span class="st">"3 steps"</span>, <span class="st">"mRS 6 weeks"</span>,</span></span>
|
||||
<span class="r-in"><span> <span class="st">"Counting to 231 now"</span></span></span>
|
||||
<span class="r-in"><span><span class="op">)</span></span></span>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">test</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"12 months follow-up"</span>, <span class="st">"3 steps"</span>, <span class="st">"mRS 6 weeks"</span>,</span></span>
|
||||
<span class="r-in"><span><span class="st">"Counting to 231 now"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">strsplitx</span><span class="op">(</span><span class="va">test</span>, <span class="st">"[0-9]"</span>, type <span class="op">=</span> <span class="st">"around"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [[1]]</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "1" "2" " months follow-up"</span>
|
||||
|
|
|
|||
|
|
@ -38,10 +38,8 @@ list
|
|||
## Examples
|
||||
|
||||
``` r
|
||||
test <- c(
|
||||
"12 months follow-up", "3 steps", "mRS 6 weeks",
|
||||
"Counting to 231 now"
|
||||
)
|
||||
test <- c("12 months follow-up", "3 steps", "mRS 6 weeks",
|
||||
"Counting to 231 now")
|
||||
strsplitx(test, "[0-9]", type = "around")
|
||||
#> [[1]]
|
||||
#> [1] "1" "2" " months follow-up"
|
||||
|
|
|
|||
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