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<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCapCAST: REDCap Castellated Data Handling And Metadata Casting — REDCapCAST-package • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCapCAST: REDCap Castellated Data Handling And Metadata Casting — REDCapCAST-package"><meta name="description" content="
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCapCAST: REDCap Castellated Data Handling and Metadata Casting — REDCapCAST-package • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCapCAST: REDCap Castellated Data Handling and Metadata Casting — REDCapCAST-package"><meta name="description" content="
Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010
; Harris et al (2019) doi:10.1016/j.jbi.2019.103208
)."><meta property="og:description" content="
@ -21,11 +21,11 @@ Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://gi
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@ -39,7 +39,7 @@ Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://gi
</nav><div class="container template-reference-topic">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>REDCapCAST: REDCap Castellated Data Handling And Metadata Casting</h1>
<img src="../logo.png" class="logo" alt=""><h1>REDCapCAST: REDCap Castellated Data Handling and Metadata Casting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCapCAST-package.R" class="external-link"><code>R/REDCapCAST-package.R</code></a></small>
<div class="d-none name"><code>REDCapCAST-package.Rd</code></div>
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@ -19,11 +19,11 @@ is used to determine which fields should be included in each resultant table."><
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@ -23,11 +23,11 @@ naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAS
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@ -19,11 +19,11 @@ Trying to make up for different naming conventions."><meta property="og:image" c
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@ -21,11 +21,11 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
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@ -15,11 +15,11 @@
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@ -25,11 +25,11 @@ data dictionary, but gives a few options for formatting."><meta property="og:ima
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@ -17,11 +17,11 @@ for a more advanced function."><meta property="og:image" content="https://agdams
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@ -133,10 +133,13 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> 18 mrs_date basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 19 mrs_score basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 20 mrs_complete basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 21 event_datetime basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 event_age basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 event_type basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 new_event_complete basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 21 con_mrs basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 con_calc basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 consensus_complete basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 event_datetime basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 25 event_age basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 26 event_type basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 27 new_event_complete basis NA text</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_label select_choices_or_calculations field_note</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 record_id NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 redcap_event_name NA NA</span>
@ -158,10 +161,13 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> 18 mrs_date NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 19 mrs_score NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 20 mrs_complete NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 21 event_datetime NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 event_age NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 event_type NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 new_event_complete NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 21 con_mrs NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 con_calc NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 consensus_complete NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 event_datetime NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 25 event_age NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 26 event_type NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 27 new_event_complete NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text_validation_type_or_show_slider_number text_validation_min</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 NA NA</span>
@ -187,6 +193,9 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 25 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 26 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 27 NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text_validation_max identifier branching_logic required_field</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 NA NA NA NA</span>
@ -212,6 +221,9 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 25 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 26 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 27 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> custom_alignment question_number matrix_group_name matrix_ranking</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 NA NA NA NA</span>
@ -237,6 +249,9 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 25 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 26 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 27 NA NA NA NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_annotation</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 NA</span>
@ -262,6 +277,9 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> 22 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 23 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 24 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 25 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 26 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 27 NA</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $`Column names`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "record_id" "redcap_event_name" </span>
@ -274,8 +292,10 @@ REDCapCAST::metadata_names.</p></dd>
<span class="r-out co"><span class="r-pr">#&gt;</span> [15] "region" "baseline_data_start_complete"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [17] "mrs_assessed" "mrs_date" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [19] "mrs_score" "mrs_complete" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] "event_datetime" "event_age" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [23] "event_type" "new_event_complete" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [21] "con_mrs" "con_calc" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [23] "consensus_complete" "event_datetime" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [25] "event_age" "event_type" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [27] "new_event_complete" </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div>
</div>

118
reference/ds2dd_detailed.html
View file

@ -15,11 +15,11 @@
</button>
<div id="navbar" class="collapse navbar-collapse ms-3">
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
<ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/REDCapCAST.html">Get started</a></li>
<li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
<li class="nav-item dropdown">
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
<li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
</ul></li>
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
@ -55,10 +55,7 @@
<span> field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> field.label.attr <span class="op">=</span> <span class="st">"label"</span>,</span>
<span> field.validation <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span>,</span>
<span> validate.time <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> time.var.sel.pos <span class="op">=</span> <span class="st">"[Tt]i[d(me)]"</span>,</span>
<span> time.var.sel.neg <span class="op">=</span> <span class="st">"[Dd]at[eo]"</span></span>
<span> metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
@ -124,20 +121,6 @@ file with `haven::read_dta()`).</p></dd>
<dd><p>redcap metadata headings. Default is
REDCapCAST:::metadata_names.</p></dd>
<dt id="arg-validate-time">validate.time<a class="anchor" aria-label="anchor" href="#arg-validate-time"></a></dt>
<dd><p>Flag to validate guessed time columns</p></dd>
<dt id="arg-time-var-sel-pos">time.var.sel.pos<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-pos"></a></dt>
<dd><p>Positive selection regex string passed to
`gues_time_only_filter()` as sel.pos.</p></dd>
<dt id="arg-time-var-sel-neg">time.var.sel.neg<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-neg"></a></dt>
<dd><p>Negative selection regex string passed to
`gues_time_only_filter()` as sel.neg.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
@ -155,82 +138,9 @@ Please, do always inspect the data dictionary before upload.</p>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_data.html">redcapcast_data</a></span></span></span>
<span class="r-in"><span><span class="va">data</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>validate.time <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.POSIX</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 2</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> inclusion_time event_datetime </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;time&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 12<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>49 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 10<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>57 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:49:42</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 12<span style="color: #949494;">:</span>01<span style="color: #949494;">:</span>07 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:49:58</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:01</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:05</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:07</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:09</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> 20<span style="color: #949494;">:</span>39<span style="color: #949494;">:</span>19 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:19</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:22</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:24</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> 08<span style="color: #949494;">:</span>50<span style="color: #949494;">:</span>31 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> 08<span style="color: #949494;">:</span>49<span style="color: #949494;">:</span>28 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.datetime</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 1</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> event_datetime </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 2024-01-18 <span style="color: #949494;">12:49:42</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 2024-01-18 <span style="color: #949494;">12:49:58</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 2024-01-18 <span style="color: #949494;">12:50:01</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 2024-01-18 <span style="color: #949494;">12:50:05</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> 2024-01-18 <span style="color: #949494;">12:50:07</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> 2024-01-18 <span style="color: #949494;">12:50:09</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> 2024-01-18 <span style="color: #949494;">12:50:19</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> 2024-01-18 <span style="color: #949494;">12:50:22</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> 2024-01-18 <span style="color: #949494;">12:50:24</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.time_only</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 1</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> inclusion_time</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;time&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 12<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>49 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 10<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>57 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 12<span style="color: #949494;">:</span>01<span style="color: #949494;">:</span>07 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> 20<span style="color: #949494;">:</span>39<span style="color: #949494;">:</span>19 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> 08<span style="color: #949494;">:</span>50<span style="color: #949494;">:</span>31 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> 08<span style="color: #949494;">:</span>49<span style="color: #949494;">:</span>28 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span><span class="va">data</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 24</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 25 × 27</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id redcap_event_name redcap_repeat_instrument redcap_repeat_instance</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 1 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
@ -243,24 +153,16 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 3 follow1 New Event (?) 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 3 follow1 New Event (?) 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 3 follow2 New Event (?) 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> 3 follow2 New Event (?) 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> 3 follow2 New Event (?) 3</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> 4 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> 4 follow2 <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> 4 follow2 New Event (?) 1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> 4 follow2 New Event (?) 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> 4 follow2 New Event (?) 3</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> 5 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> 6 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 20 more variables: cpr &lt;chr&gt;, inclusion &lt;date&gt;, inclusion_time &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 15 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 23 more variables: cpr &lt;chr&gt;, inclusion &lt;date&gt;, inclusion_time &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># dob &lt;date&gt;, age &lt;dbl&gt;, age_integer &lt;dbl&gt;, sex &lt;chr&gt;, cohabitation &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># hypertension &lt;chr&gt;, diabetes &lt;chr&gt;, region &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># baseline_data_start_complete &lt;chr&gt;, mrs_assessed &lt;chr&gt;, mrs_date &lt;date&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># mrs_score &lt;dbl&gt;, mrs_complete &lt;chr&gt;, event_datetime &lt;dttm&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># event_age &lt;lgl&gt;, event_type &lt;chr&gt;, new_event_complete &lt;chr&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># mrs_score &lt;dbl&gt;, mrs_complete &lt;chr&gt;, con_mrs &lt;lgl&gt;, con_calc &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># consensus_complete &lt;chr&gt;, event_datetime &lt;dttm&gt;, event_age &lt;dbl&gt;, …</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 24 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 27 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
@ -273,7 +175,7 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> dob data <span style="color: #BB0000;">NA</span> text dob </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> age data <span style="color: #BB0000;">NA</span> text age </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> age_integer data <span style="color: #BB0000;">NA</span> text age_integer </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 14 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 17 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>

4
reference/easy_redcap.html
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@ -15,11 +15,11 @@
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@ -21,11 +21,11 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
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reference/file_extension.html
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@ -1,5 +1,5 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Helper to import files correctly — file_extension • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Helper to import files correctly — file_extension"><meta name="description" content="Helper to import files correctly"><meta property="og:description" content="Helper to import files correctly"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRECATED Helper to import files correctly — file_extension • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRECATED Helper to import files correctly — file_extension"><meta name="description" content="DEPRECATED Helper to import files correctly"><meta property="og:description" content="DEPRECATED Helper to import files correctly"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@ -15,11 +15,11 @@
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<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
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</ul></li>
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@ -33,13 +33,13 @@
</nav><div class="container template-reference-topic">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1>
<img src="../logo.png" class="logo" alt=""><h1>DEPRECATED Helper to import files correctly</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>file_extension.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Helper to import files correctly</p>
<p>DEPRECATED Helper to import files correctly</p>
</div>
<div class="section level2">
@ -64,7 +64,7 @@
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">file_extension</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/list.files.html" class="external-link">list.files</a></span><span class="op">(</span><span class="fu">here</span><span class="fu">::</span><span class="fu"><a href="https://here.r-lib.org//reference/here.html" class="external-link">here</a></span><span class="op">(</span><span class="st">""</span><span class="op">)</span><span class="op">)</span><span class="op">[[</span><span class="fl">2</span><span class="op">]</span><span class="op">]</span><span class="op">)</span><span class="op">[[</span><span class="fl">1</span><span class="op">]</span><span class="op">]</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] ""</span>
<span class="r-in"><span><span class="fu">file_extension</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"file.cd..ks"</span>,<span class="st">"file"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">file_extension</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"file.cd..ks"</span>, <span class="st">"file"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "ks" "" </span>
</code></pre></div>
</div>

4
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@ -15,11 +15,11 @@
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@ -15,11 +15,11 @@
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154
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@ -0,0 +1,154 @@
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Guess time variables based on naming pattern — guess_time_only • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Guess time variables based on naming pattern — guess_time_only"><meta name="description" content='This is for repairing data with time variables with appended "1970-01-01"'><meta property="og:description" content='This is for repairing data with time variables with appended "1970-01-01"'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<img src="../logo.png" class="logo" alt=""><h1>Guess time variables based on naming pattern</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>guess_time_only.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>This is for repairing data with time variables with appended "1970-01-01"</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">guess_time_only</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> validate.time <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> time.var.sel.pos <span class="op">=</span> <span class="st">"[Tt]i[d(me)]"</span>,</span>
<span> time.var.sel.neg <span class="op">=</span> <span class="st">"[Dd]at[eo]"</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data.frame or tibble</p></dd>
<dt id="arg-validate-time">validate.time<a class="anchor" aria-label="anchor" href="#arg-validate-time"></a></dt>
<dd><p>Flag to validate guessed time columns</p></dd>
<dt id="arg-time-var-sel-pos">time.var.sel.pos<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-pos"></a></dt>
<dd><p>Positive selection regex string passed to
`gues_time_only_filter()` as sel.pos.</p></dd>
<dt id="arg-time-var-sel-neg">time.var.sel.neg<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-neg"></a></dt>
<dd><p>Negative selection regex string passed to
`gues_time_only_filter()` as sel.neg.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame or tibble</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">guess_time_only</span><span class="op">(</span>validate.time <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.POSIX</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 25 × 2</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> inclusion_time event_datetime </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;time&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 12<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>49 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 10<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>57 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:49:42</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 12<span style="color: #949494;">:</span>01<span style="color: #949494;">:</span>07 <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:49:58</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:01</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> <span style="color: #BB0000;">NA</span> 2024-01-18 <span style="color: #949494;">12:50:05</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 15 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.datetime</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 25 × 1</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> event_datetime </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 2024-01-18 <span style="color: #949494;">12:49:42</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 2024-01-18 <span style="color: #949494;">12:49:58</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 2024-01-18 <span style="color: #949494;">12:50:01</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 2024-01-18 <span style="color: #949494;">12:50:05</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 15 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.time_only</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 25 × 1</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> inclusion_time</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;time&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 12<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>49 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 10<span style="color: #949494;">:</span>38<span style="color: #949494;">:</span>57 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 12<span style="color: #949494;">:</span>01<span style="color: #949494;">:</span>07 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> <span style="color: #BB0000;">NA</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 15 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Finish incomplete haven attributes substituting missings with values</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>haven_all_levels.Rd</code></div>
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<div class="ref-description section level2">
<p>Finish incomplete haven attributes substituting missings with values</p>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">haven_all_levels</span><span class="op">(</span><span class="va">data</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>haven labelled variable</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>named vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/structure.html" class="external-link">structure</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">2</span>, <span class="fl">3</span>, <span class="fl">2</span>, <span class="fl">10</span>, <span class="fl">9</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> labels <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>Unknown <span class="op">=</span> <span class="fl">9</span>, Refused <span class="op">=</span> <span class="fl">10</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> class <span class="op">=</span> <span class="st">"haven_labelled"</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">haven_all_levels</span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 2 3 Unknown Refused </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 2 3 9 10 </span>
</code></pre></div>
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@ -130,7 +130,7 @@
<code><a href="file_extension.html">file_extension()</a></code>
</dt>
<dd>Helper to import files correctly</dd>
<dd>DEPRECATED Helper to import files correctly</dd>
</dl><dl><dt>
<code><a href="focused_metadata.html">focused_metadata()</a></code>
@ -157,12 +157,24 @@
<dd>Get the id name</dd>
</dl><dl><dt>
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</dt>
<dd>Guess time variables based on naming pattern</dd>
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</dt>
<dd>Try at determining which are true time only variables</dd>
</dl><dl><dt>
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</dt>
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</dt>
@ -205,6 +217,18 @@
<dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd>
</dl><dl><dt>
<code><a href="numchar2fct.html">numchar2fct()</a></code>
</dt>
<dd>Applying var2fct across data set</dd>
</dl><dl><dt>
<code><a href="parse_data.html">parse_data()</a></code>
</dt>
<dd>Helper to auto-parse un-formatted data with haven and readr</dd>
</dl><dl><dt>
<code><a href="process_user_input.html">process_user_input()</a></code>
</dt>
@ -305,6 +329,12 @@
</dt>
<dd>Correction based on time_only_filter function</dd>
</dl><dl><dt>
<code><a href="var2fct.html">var2fct()</a></code>
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<img src="../logo.png" class="logo" alt=""><h1>Applying var2fct across data set</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>numchar2fct.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Individual thresholds for character and numeric columns</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">numchar2fct</span><span class="op">(</span><span class="va">data</span>, numeric.threshold <span class="op">=</span> <span class="fl">6</span>, character.throshold <span class="op">=</span> <span class="fl">6</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>dataset. data.frame or tibble</p></dd>
<dt id="arg-numeric-threshold">numeric.threshold<a class="anchor" aria-label="anchor" href="#arg-numeric-threshold"></a></dt>
<dd><p>threshold for var2fct for numeric columns. Default
is 6.</p></dd>
<dt id="arg-character-throshold">character.throshold<a class="anchor" aria-label="anchor" href="#arg-character-throshold"></a></dt>
<dd><p>threshold for var2fct for character columns.
Default is 6.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame or tibble</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 'data.frame': 32 obs. of 11 variables:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ mpg : num 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ cyl : num 6 6 4 6 8 6 8 4 4 6 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ disp: num 160 160 108 258 360 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ hp : num 110 110 93 110 175 105 245 62 95 123 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ drat: num 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ wt : num 2.62 2.88 2.32 3.21 3.44 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ qsec: num 16.5 17 18.6 19.4 17 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ vs : num 0 0 1 1 0 1 0 1 1 1 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ am : num 1 1 1 0 0 0 0 0 0 0 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ gear: num 4 4 4 3 3 3 3 4 4 4 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ carb: num 4 4 1 1 2 1 4 2 2 4 ...</span>
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">numchar2fct</span><span class="op">(</span>numeric.threshold <span class="op">=</span> <span class="fl">6</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 'data.frame': 32 obs. of 11 variables:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ mpg : num 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ cyl : Factor w/ 3 levels "4","6","8": 2 2 1 2 3 2 3 1 1 2 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ disp: num 160 160 108 258 360 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ hp : num 110 110 93 110 175 105 245 62 95 123 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ drat: num 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ wt : num 2.62 2.88 2.32 3.21 3.44 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ qsec: num 16.5 17 18.6 19.4 17 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ vs : Factor w/ 2 levels "0","1": 1 1 2 2 1 2 1 2 2 2 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ am : Factor w/ 2 levels "0","1": 2 2 2 1 1 1 1 1 1 1 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ gear: Factor w/ 3 levels "3","4","5": 2 2 2 1 1 1 1 2 2 2 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ carb: Factor w/ 6 levels "1","2","3","4",..: 4 4 1 1 2 1 4 2 2 4 ...</span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Helper to auto-parse un-formatted data with haven and readr</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>parse_data.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Helper to auto-parse un-formatted data with haven and readr</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">parse_data</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> guess_type <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> col_types <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> locale <span class="op">=</span> <span class="fu">readr</span><span class="fu">::</span><span class="fu"><a href="https://readr.tidyverse.org/reference/locale.html" class="external-link">default_locale</a></span><span class="op">(</span><span class="op">)</span>,</span>
<span> ignore.vars <span class="op">=</span> <span class="st">"cpr"</span>,</span>
<span> <span class="va">...</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>data.frame or tibble</p></dd>
<dt id="arg-guess-type">guess_type<a class="anchor" aria-label="anchor" href="#arg-guess-type"></a></dt>
<dd><p>logical to guess type with readr</p></dd>
<dt id="arg-col-types">col_types<a class="anchor" aria-label="anchor" href="#arg-col-types"></a></dt>
<dd><p>specify col_types using readr semantics. Ignored if guess_type is TRUE</p></dd>
<dt id="arg-locale">locale<a class="anchor" aria-label="anchor" href="#arg-locale"></a></dt>
<dd><p>option to specify locale. Defaults to readr::default_locale().</p></dd>
<dt id="arg-ignore-vars">ignore.vars<a class="anchor" aria-label="anchor" href="#arg-ignore-vars"></a></dt>
<dd><p>specify column names of columns to ignore when parsing</p></dd>
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame or tibble</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">parse_data</span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 'data.frame': 32 obs. of 11 variables:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ mpg : num 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ cyl : num 6 6 4 6 8 6 8 4 4 6 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ disp: num 160 160 108 258 360 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ hp : num 110 110 93 110 175 105 245 62 95 123 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ drat: num 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ wt : num 2.62 2.88 2.32 3.21 3.44 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ qsec: num 16.5 17 18.6 19.4 17 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ vs : num 0 0 1 1 0 1 0 1 1 1 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ am : num 1 1 1 0 0 0 0 0 0 0 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ gear: num 4 4 4 3 3 3 3 4 4 4 ...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $ carb: num 4 4 1 1 2 1 4 2 2 4 ...</span>
</code></pre></div>
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@ -88,6 +88,15 @@ Contains only synthetic data.</p>
<dt>cohabitation</dt>
<dd><p>Cohabitation status, character</p></dd>
<dt>con_calc</dt>
<dd><p>con_calc</p></dd>
<dt>con_mrs</dt>
<dd><p>con_mrs</p></dd>
<dt>consensus_complete</dt>
<dd><p>consensus_complete</p></dd>
<dt>hypertension</dt>
<dd><p>Hypertension, character</p></dd>

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<img src="../logo.png" class="logo" alt=""><h1>Convert vector to factor based on threshold of number of unique levels</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>var2fct.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>This is a wrapper of forcats::as_factor, which sorts numeric vectors before
factoring, but levels character vectors in order of appearance.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">var2fct</span><span class="op">(</span><span class="va">data</span>, <span class="va">unique.n</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>vector or data.frame column</p></dd>
<dt id="arg-unique-n">unique.n<a class="anchor" aria-label="anchor" href="#arg-unique-n"></a></dt>
<dd><p>threshold to convert class to factor</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fl">4</span><span class="op">)</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">var2fct</span><span class="op">(</span><span class="fl">6</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 2 3 4 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 4 6 7 3 </span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span>, <span class="fl">20</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">var2fct</span><span class="op">(</span><span class="fl">6</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Length Class Mode </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 20 character character </span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">20</span>, <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu">var2fct</span><span class="op">(</span><span class="fl">6</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] c d d d c b c b c b c b d b a c b b c a</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Levels: c d b a</span>
</code></pre></div>
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