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78 changed files with 510 additions and 927 deletions
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@ -7,7 +7,7 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.11.3</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.11.4</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -34,7 +34,7 @@
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
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<div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
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</div>
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@ -55,7 +55,7 @@
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<span> field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> field.label.attr <span class="op">=</span> <span class="st">"label"</span>,</span>
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<span> field.validation <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span>,</span>
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<span> metadata <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu"><a href="redcap_meta_default.html">redcap_meta_default</a></span><span class="op">(</span><span class="op">)</span>,</span>
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<span> convert.logicals <span class="op">=</span> <span class="cn">TRUE</span></span>
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<span><span class="op">)</span></span></code></pre></div>
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</div>
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@ -120,7 +120,7 @@ file with `haven::read_dta()`).</p></dd>
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<dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
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<dd><p>redcap metadata headings. Default is
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REDCapCAST:::metadata_names.</p></dd>
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REDCapCAST::redcap_meta_default().</p></dd>
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<dt id="arg-convert-logicals">convert.logicals<a class="anchor" aria-label="anchor" href="#arg-convert-logicals"></a></dt>
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@ -143,7 +143,8 @@ Please, do always inspect the data dictionary before upload.</p>
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<div class="section level2">
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co">## Basic parsing with default options</span></span></span>
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<span class="r-in"><span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_data.html">redcapcast_data</a></span> <span class="op">|></span></span></span>
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<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/ns-load.html" class="external-link">requireNamespace</a></span><span class="op">(</span><span class="st">"REDCapCAST"</span><span class="op">)</span></span></span>
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<span class="r-in"><span><span class="va">redcapcast_data</span> <span class="op">|></span></span></span>
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<span class="r-in"><span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="op">-</span><span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://tidyselect.r-lib.org/reference/starts_with.html" class="external-link">starts_with</a></span><span class="op">(</span><span class="st">"redcap_"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span></span></span>
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<span class="r-in"><span> <span class="fu">ds2dd_detailed</span><span class="op">(</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> $data</span>
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@ -322,12 +323,12 @@ Please, do always inspect the data dictionary before upload.</p>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
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<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id a <span style="color: #BB0000;">NA</span> text record_id </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id b <span style="color: #BB0000;">NA</span> text record_id </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepal.length a <span style="color: #BB0000;">NA</span> text sepal.length</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width a <span style="color: #BB0000;">NA</span> text sepal.width </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length b <span style="color: #BB0000;">NA</span> text petal.length</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width b <span style="color: #BB0000;">NA</span> text sepal.width </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length a <span style="color: #BB0000;">NA</span> text petal.length</span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width b <span style="color: #BB0000;">NA</span> text petal.width </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species b <span style="color: #BB0000;">NA</span> radio species </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species a <span style="color: #BB0000;">NA</span> radio species </span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
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<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
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