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better name clean

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Andreas Gammelgaard Damsbo 2025-11-14 14:56:18 +01:00
commit 82298eaf39
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3 changed files with 3285 additions and 833 deletions
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53
R/utils.r
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@ -99,19 +99,30 @@ focused_metadata <- function(metadata, vars_in_data) {
#'
#' @examples
#' "Research!, ne:ws? and c;l-.ls" |> clean_redcap_name()
#' "8_new_TEST_" |> clean_redcap_name()
clean_redcap_name <- function(x) {
gsub("[,.;:?!@]","",
gsub(
" ", "_",
"[,.;:?!@]", "",
gsub(
"[' ']$", "",
" ", "_",
gsub(
"[^a-z0-9' '_]", "",
tolower(x)
"__", "_",
gsub(
"*_$", "",
gsub(
"^_*", "",
gsub(
"[' ']$", "",
gsub(
"[^a-z0-9' '_]", "",
tolower(x)
)
)
)
)
)
)
)
)
}
@ -136,14 +147,14 @@ sanitize_split <- function(l,
"redcap_repeat_instrument",
"redcap_repeat_instance"
),
drop.complete=TRUE,
drop.empty=TRUE) {
drop.complete = TRUE,
drop.empty = TRUE) {
generic.names <- c(
get_id_name(l),
generic.names
)
if (drop.complete){
if (drop.complete) {
generic.names <- c(
generic.names,
paste0(names(l), "_complete")
@ -153,16 +164,16 @@ sanitize_split <- function(l,
out <- lapply(l, function(i) {
if (ncol(i) > 2) {
s <- i[!colnames(i) %in% generic.names]
if (drop.empty){
i[!apply(is.na(s), MARGIN = 1, FUN = all), ]
}
if (drop.empty) {
i[!apply(is.na(s), MARGIN = 1, FUN = all), ]
}
} else {
i
}
})
# On removing empty variables, a list may end up empty
out[sapply(out,nrow)>0]
out[sapply(out, nrow) > 0]
}
@ -357,8 +368,10 @@ split_non_repeating_forms <-
#' @export
#'
#' @examples
#' test <- c("12 months follow-up", "3 steps", "mRS 6 weeks",
#' "Counting to 231 now")
#' test <- c(
#' "12 months follow-up", "3 steps", "mRS 6 weeks",
#' "Counting to 231 now"
#' )
#' strsplitx(test, "[0-9]", type = "around")
strsplitx <- function(x,
split,
@ -517,7 +530,7 @@ is_repeated_longitudinal <- function(data, generics = c(
}
dummy_fun <- function(...){
dummy_fun <- function(...) {
list(
gtsummary::add_difference()
)
@ -533,10 +546,10 @@ dummy_fun <- function(...){
#' @export
#'
#' @examples
#' "length" |> cut_string_length(l=3)
cut_string_length <- function(data,l=100){
if (nchar(data)>=l){
substr(data,1,l)
#' "length" |> cut_string_length(l = 3)
cut_string_length <- function(data, l = 100) {
if (nchar(data) >= l) {
substr(data, 1, l)
} else {
data
}