Closes #9. User can specify primary table label

Incremented to v0.1.0
This commit is contained in:
Paul W. Egeler, M.S., GStat 2019-07-01 16:54:29 -04:00
commit 76420b527c
5 changed files with 118 additions and 87 deletions

76
R/R/utils.r Normal file
View file

@ -0,0 +1,76 @@
match_fields_to_form <- function(metadata, vars_in_data) {
fields <- metadata[
!metadata$field_type %in% c("descriptive", "checkbox"),
c("field_name", "form_name")
]
# Process instrument status fields
form_names <- unique(metadata$form_name)
form_complete_fields <- data.frame(
field_name = paste0(form_names, "_complete"),
form_name = form_names,
stringsAsFactors = FALSE
)
fields <- rbind(fields, form_complete_fields)
# Process checkbox fields
if (any(metadata$field_type == "checkbox")) {
checkbox_basenames <- metadata[
metadata$field_type == "checkbox",
c("field_name", "form_name")
]
checkbox_fields <-
do.call(
"rbind",
apply(
checkbox_basenames,
1,
function(x, y)
data.frame(
field_name = y[grepl(paste0("^", x[1], "___((?!\\.factor).)+$"), y, perl = TRUE)],
form_name = x[2],
stringsAsFactors = FALSE,
row.names = NULL
),
y = vars_in_data
)
)
fields <- rbind(fields, checkbox_fields)
}
# Process ".*\\.factor" fields supplied by REDCap's export data R script
if (any(grepl("\\.factor$", vars_in_data))) {
factor_fields <-
do.call(
"rbind",
apply(
fields,
1,
function(x, y) {
field_indices <- grepl(paste0("^", x[1], "\\.factor$"), y)
if (any(field_indices))
data.frame(
field_name = y[field_indices],
form_name = x[2],
stringsAsFactors = FALSE,
row.names = NULL
)
},
y = vars_in_data
)
)
fields <- rbind(fields, factor_fields)
}
fields
}