Deploying to gh-pages from @ agdamsbo/REDCapCAST@e6a7ef3e5a 🚀

This commit is contained in:
agdamsbo 2024-02-06 13:27:54 +00:00
commit 75bb5f4091
18 changed files with 628 additions and 257 deletions

View file

@ -61,7 +61,7 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">redcap_wider</span><span class="op">(</span></span>
<span> <span class="va">list</span>,</span>
<span> <span class="va">data</span>,</span>
<span> event.glue <span class="op">=</span> <span class="st">"{.value}_{redcap_event_name}"</span>,</span>
<span> inst.glue <span class="op">=</span> <span class="st">"{.value}_{redcap_repeat_instance}"</span></span>
<span><span class="op">)</span></span></code></pre></div>
@ -69,7 +69,7 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>list</dt>
<dl><dt>data</dt>
<dd><p>A list of data frames.</p></dd>
@ -90,17 +90,57 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">list</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># Longitudinal</span></span></span>
<span class="r-in"><span><span class="va">list1</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>redcap_event_name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"baseline"</span>, <span class="st">"baseline"</span>, <span class="st">"followup"</span>, <span class="st">"followup"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>age <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">25</span>,<span class="fl">26</span>,<span class="fl">27</span>,<span class="fl">28</span><span class="op">)</span><span class="op">)</span>,</span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>redcap_event_name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"baseline"</span>, <span class="st">"baseline"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>gender <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"male"</span>, <span class="st">"female"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list1</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id age_baseline age_followup gender</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1 25 27 male</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 2 26 28 female</span>
<span class="r-in"><span><span class="co"># Simpel with two instruments</span></span></span>
<span class="r-in"><span><span class="va">list2</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>age <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">25</span>,<span class="fl">26</span><span class="op">)</span><span class="op">)</span>,</span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>gender <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"male"</span>, <span class="st">"female"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list2</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id age gender</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1 25 male</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 2 26 female</span>
<span class="r-in"><span><span class="co"># Simple with single instrument</span></span></span>
<span class="r-in"><span><span class="va">list3</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>age <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">25</span>,<span class="fl">26</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list3</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id age</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1 25</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 2 26</span>
<span class="r-in"><span><span class="co"># Longitudinal with repeatable instruments</span></span></span>
<span class="r-in"><span><span class="va">list4</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>redcap_event_name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"baseline"</span>, <span class="st">"baseline"</span>, <span class="st">"followup"</span>, <span class="st">"followup"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>age <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">25</span>,<span class="fl">26</span>,<span class="fl">27</span>,<span class="fl">28</span><span class="op">)</span><span class="op">)</span>,</span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">1</span>,<span class="fl">1</span>,<span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">2</span>,<span class="fl">2</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>redcap_event_name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"baseline"</span>, <span class="st">"baseline"</span>, <span class="st">"followup"</span>, <span class="st">"followup"</span>,</span></span>
<span class="r-in"><span><span class="st">"baseline"</span>, <span class="st">"baseline"</span>, <span class="st">"followup"</span>, <span class="st">"followup"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>redcap_repeat_instrument <span class="op">=</span> <span class="st">"walk"</span>,</span></span>
<span class="r-in"><span>redcap_repeat_instance<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">1</span>,<span class="fl">2</span>,<span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>dist <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">40</span>, <span class="fl">32</span>, <span class="fl">25</span>, <span class="fl">33</span>, <span class="fl">28</span>, <span class="fl">24</span>, <span class="fl">23</span>, <span class="fl">36</span><span class="op">)</span><span class="op">)</span>,</span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>,<span class="fl">2</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>redcap_event_name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"baseline"</span>, <span class="st">"baseline"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span>gender <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"male"</span>, <span class="st">"female"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list4</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id age_baseline age_followup dist_1_baseline dist_1_followup</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1 25 27 40 25</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 2 26 28 28 23</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> dist_2_baseline dist_2_followup gender</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 32 33 male</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 24 36 female</span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>