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https://github.com/agdamsbo/REDCapCAST.git
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7 changed files with 126 additions and 159 deletions
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@ -98,23 +98,23 @@ demonstration of the functions.</p>
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</h2>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|></span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -140,12 +140,12 @@ demonstration of the functions.</p>
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@ -157,7 +157,7 @@ demonstration of the functions.</p>
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@ -169,7 +169,7 @@ demonstration of the functions.</p>
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@ -181,13 +181,13 @@ demonstration of the functions.</p>
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@ -202,7 +202,7 @@ demonstration of the functions.</p>
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@ -222,7 +222,7 @@ demonstration of the functions.</p>
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@ -234,15 +234,15 @@ demonstration of the functions.</p>
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@ -254,11 +254,11 @@ demonstration of the functions.</p>
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@ -284,7 +284,7 @@ demonstration of the functions.</p>
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@ -299,15 +299,15 @@ demonstration of the functions.</p>
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@ -326,7 +326,7 @@ demonstration of the functions.</p>
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@ -339,7 +339,7 @@ demonstration of the functions.</p>
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@ -353,15 +353,15 @@ demonstration of the functions.</p>
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@ -371,16 +371,16 @@ demonstration of the functions.</p>
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@ -390,7 +390,7 @@ demonstration of the functions.</p>
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border-bottom-color: #D3D3D3;
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@ -400,7 +400,7 @@ demonstration of the functions.</p>
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padding-right: 5px;
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@ -410,7 +410,7 @@ demonstration of the functions.</p>
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border-top-color: #D3D3D3;
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@ -420,11 +420,11 @@ demonstration of the functions.</p>
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@ -433,7 +433,7 @@ demonstration of the functions.</p>
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@ -447,7 +447,7 @@ demonstration of the functions.</p>
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@ -456,7 +456,7 @@ demonstration of the functions.</p>
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</div>
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<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|></span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<div id="howggqvkiz" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
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<style>#howggqvkiz table {
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<div id="gzbgzhlwxt" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
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<style>#gzbgzhlwxt table {
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line-height: normal;
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border-left-color: #D3D3D3;
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}
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#howggqvkiz .gt_caption {
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font-size: 125%;
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font-weight: initial;
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border-bottom-width: 0;
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}
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border-bottom-color: #FFFFFF;
|
||||
|
|
@ -1084,13 +1084,13 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_bottom_border {
|
||||
#gzbgzhlwxt .gt_bottom_border {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_col_headings {
|
||||
#gzbgzhlwxt .gt_col_headings {
|
||||
border-top-style: solid;
|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
|
|
@ -1105,7 +1105,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_col_heading {
|
||||
#gzbgzhlwxt .gt_col_heading {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1125,7 +1125,7 @@ demonstration of the functions.</p>
|
|||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_column_spanner_outer {
|
||||
#gzbgzhlwxt .gt_column_spanner_outer {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1137,15 +1137,15 @@ demonstration of the functions.</p>
|
|||
padding-right: 4px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_column_spanner_outer:first-child {
|
||||
#gzbgzhlwxt .gt_column_spanner_outer:first-child {
|
||||
padding-left: 0;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_column_spanner_outer:last-child {
|
||||
#gzbgzhlwxt .gt_column_spanner_outer:last-child {
|
||||
padding-right: 0;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_column_spanner {
|
||||
#gzbgzhlwxt .gt_column_spanner {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
|
|
@ -1157,11 +1157,11 @@ demonstration of the functions.</p>
|
|||
width: 100%;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_spanner_row {
|
||||
#gzbgzhlwxt .gt_spanner_row {
|
||||
border-bottom-style: hidden;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_group_heading {
|
||||
#gzbgzhlwxt .gt_group_heading {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1187,7 +1187,7 @@ demonstration of the functions.</p>
|
|||
text-align: left;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_empty_group_heading {
|
||||
#gzbgzhlwxt .gt_empty_group_heading {
|
||||
padding: 0.5px;
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
|
|
@ -1202,15 +1202,15 @@ demonstration of the functions.</p>
|
|||
vertical-align: middle;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_from_md > :first-child {
|
||||
#gzbgzhlwxt .gt_from_md > :first-child {
|
||||
margin-top: 0;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_from_md > :last-child {
|
||||
#gzbgzhlwxt .gt_from_md > :last-child {
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_row {
|
||||
#gzbgzhlwxt .gt_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1229,7 +1229,7 @@ demonstration of the functions.</p>
|
|||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_stub {
|
||||
#gzbgzhlwxt .gt_stub {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1242,7 +1242,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_stub_row_group {
|
||||
#gzbgzhlwxt .gt_stub_row_group {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1256,15 +1256,15 @@ demonstration of the functions.</p>
|
|||
vertical-align: top;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_row_group_first td {
|
||||
#gzbgzhlwxt .gt_row_group_first td {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_row_group_first th {
|
||||
#gzbgzhlwxt .gt_row_group_first th {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_summary_row {
|
||||
#gzbgzhlwxt .gt_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
|
|
@ -1274,16 +1274,16 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_first_summary_row {
|
||||
#gzbgzhlwxt .gt_first_summary_row {
|
||||
border-top-style: solid;
|
||||
border-top-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_first_summary_row.thick {
|
||||
#gzbgzhlwxt .gt_first_summary_row.thick {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_last_summary_row {
|
||||
#gzbgzhlwxt .gt_last_summary_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1293,7 +1293,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_grand_summary_row {
|
||||
#gzbgzhlwxt .gt_grand_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
|
|
@ -1303,7 +1303,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_first_grand_summary_row {
|
||||
#gzbgzhlwxt .gt_first_grand_summary_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1313,7 +1313,7 @@ demonstration of the functions.</p>
|
|||
border-top-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_last_grand_summary_row_top {
|
||||
#gzbgzhlwxt .gt_last_grand_summary_row_top {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1323,11 +1323,11 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_striped {
|
||||
#gzbgzhlwxt .gt_striped {
|
||||
background-color: rgba(128, 128, 128, 0.05);
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_table_body {
|
||||
#gzbgzhlwxt .gt_table_body {
|
||||
border-top-style: solid;
|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
|
|
@ -1336,7 +1336,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_footnotes {
|
||||
#gzbgzhlwxt .gt_footnotes {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
border-bottom-style: none;
|
||||
|
|
@ -1350,7 +1350,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_footnote {
|
||||
#gzbgzhlwxt .gt_footnote {
|
||||
margin: 0px;
|
||||
font-size: 90%;
|
||||
padding-top: 4px;
|
||||
|
|
@ -1359,7 +1359,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_sourcenotes {
|
||||
#gzbgzhlwxt .gt_sourcenotes {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
border-bottom-style: none;
|
||||
|
|
@ -1373,7 +1373,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_sourcenote {
|
||||
#gzbgzhlwxt .gt_sourcenote {
|
||||
font-size: 90%;
|
||||
padding-top: 4px;
|
||||
padding-bottom: 4px;
|
||||
|
|
@ -1381,63 +1381,63 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_left {
|
||||
#gzbgzhlwxt .gt_left {
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_center {
|
||||
#gzbgzhlwxt .gt_center {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_right {
|
||||
#gzbgzhlwxt .gt_right {
|
||||
text-align: right;
|
||||
font-variant-numeric: tabular-nums;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_font_normal {
|
||||
#gzbgzhlwxt .gt_font_normal {
|
||||
font-weight: normal;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_font_bold {
|
||||
#gzbgzhlwxt .gt_font_bold {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_font_italic {
|
||||
#gzbgzhlwxt .gt_font_italic {
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_super {
|
||||
#gzbgzhlwxt .gt_super {
|
||||
font-size: 65%;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_footnote_marks {
|
||||
#gzbgzhlwxt .gt_footnote_marks {
|
||||
font-size: 75%;
|
||||
vertical-align: 0.4em;
|
||||
position: initial;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_asterisk {
|
||||
#gzbgzhlwxt .gt_asterisk {
|
||||
font-size: 100%;
|
||||
vertical-align: 0;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_indent_1 {
|
||||
#gzbgzhlwxt .gt_indent_1 {
|
||||
text-indent: 5px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_indent_2 {
|
||||
#gzbgzhlwxt .gt_indent_2 {
|
||||
text-indent: 10px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_indent_3 {
|
||||
#gzbgzhlwxt .gt_indent_3 {
|
||||
text-indent: 15px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_indent_4 {
|
||||
#gzbgzhlwxt .gt_indent_4 {
|
||||
text-indent: 20px;
|
||||
}
|
||||
|
||||
#howggqvkiz .gt_indent_5 {
|
||||
#gzbgzhlwxt .gt_indent_5 {
|
||||
text-indent: 25px;
|
||||
}
|
||||
</style>
|
||||
|
|
|
|||
|
|
@ -8,16 +8,17 @@
|
|||
<meta name="description" content="Forked from REDCapRITS by Paul Egeler and Spectrum Health.
|
||||
See <https://github.com/SpectrumHealthResearch/REDCapRITS>.
|
||||
Handles castellated datasets from REDCap projects with repeating instruments.
|
||||
Assists in splitting raw REDCap data exports to base table and child tables
|
||||
for each repeated instrument. Keeps a focused data export approach, by
|
||||
allowing to only export required data from the database.
|
||||
Assists in casting tidy tables from raw REDCap data exports for each
|
||||
repeated instrument. Keeps a focused data export approach, by allowing to
|
||||
only export required data from the database.
|
||||
REDCap (Research Electronic Data Capture) is a secure, web-based software
|
||||
platform designed to support data capture for research studies, providing
|
||||
1) an intuitive interface for validated data capture; 2) audit trails for
|
||||
tracking data manipulation and export procedures; 3) automated export
|
||||
procedures for seamless data downloads to common statistical packages; and
|
||||
4) procedures for data integration and interoperability with external sources
|
||||
(<doi:10.1016/j.jbi.2008.08.010>; <doi:10.1016/j.jbi.2019.103208>).">
|
||||
(Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
|
||||
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).">
|
||||
<title>REDCap Castellated Data Handling • REDCapCAST</title>
|
||||
<!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png">
|
||||
<link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png">
|
||||
|
|
@ -33,16 +34,17 @@
|
|||
<meta property="og:description" content="Forked from REDCapRITS by Paul Egeler and Spectrum Health.
|
||||
See <https://github.com/SpectrumHealthResearch/REDCapRITS>.
|
||||
Handles castellated datasets from REDCap projects with repeating instruments.
|
||||
Assists in splitting raw REDCap data exports to base table and child tables
|
||||
for each repeated instrument. Keeps a focused data export approach, by
|
||||
allowing to only export required data from the database.
|
||||
Assists in casting tidy tables from raw REDCap data exports for each
|
||||
repeated instrument. Keeps a focused data export approach, by allowing to
|
||||
only export required data from the database.
|
||||
REDCap (Research Electronic Data Capture) is a secure, web-based software
|
||||
platform designed to support data capture for research studies, providing
|
||||
1) an intuitive interface for validated data capture; 2) audit trails for
|
||||
tracking data manipulation and export procedures; 3) automated export
|
||||
procedures for seamless data downloads to common statistical packages; and
|
||||
4) procedures for data integration and interoperability with external sources
|
||||
(<doi:10.1016/j.jbi.2008.08.010>; <doi:10.1016/j.jbi.2019.103208>).">
|
||||
(Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>;
|
||||
Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).">
|
||||
<meta property="og:image" content="/logo.png">
|
||||
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
||||
|
|
|
|||
|
|
@ -3,5 +3,5 @@ pkgdown: 2.0.7
|
|||
pkgdown_sha: ~
|
||||
articles:
|
||||
Introduction: Introduction.html
|
||||
last_built: 2023-06-02T12:29Z
|
||||
last_built: 2023-06-05T06:39Z
|
||||
|
||||
|
|
|
|||
|
|
@ -156,17 +156,19 @@ instruments only or for all forms.</p></dd>
|
|||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># You must set the working directory first since the REDCap data export</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># script contains relative file references.</span></span></span>
|
||||
<span class="r-in"><span><span class="va">old</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/getwd.html" class="external-link">getwd</a></span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/getwd.html" class="external-link">setwd</a></span><span class="op">(</span><span class="st">"/path/to/data/"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># Run the data export script supplied by REDCap.</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># This will create a data.frame of your records called 'data'</span></span></span>
|
||||
<span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/source.html" class="external-link">source</a></span><span class="op">(</span><span class="st">"ExampleProject_R_2018-06-03_1700.r"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># Get the metadata</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># Get the metadatan</span></span></span>
|
||||
<span class="r-in"><span><span class="va">metadata</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/utils/read.table.html" class="external-link">read.csv</a></span><span class="op">(</span><span class="st">"ExampleProject_DataDictionary_2018-06-03.csv"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># Split the tables</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">REDCapRITS</span><span class="fu">::</span><span class="fu">REDCap_split</span><span class="op">(</span><span class="va">data</span>, <span class="va">metadata</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/getwd.html" class="external-link">setwd</a></span><span class="op">(</span><span class="va">old</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
|
|
|||
File diff suppressed because one or more lines are too long
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Add table
Add a link
Reference in a new issue