shiny app moved to app folder and seperate files for possible shinylive deploy

R/shiny_cast.R

@@ -3,211 +3,18 @@
 #' @return shiny server
 #' @export
 server_factory <- function() {
-  function(input, output, session) {
-    require(REDCapCAST)
-
-
-    ## Trial and error testing
-    # dat <- read_input(file = here::here("data/mtcars_redcap.csv"))
-    #
-    # dd <- ds2dd_detailed(data = dat)
-    #
-    # write.csv(purrr::pluck(dd, "meta"),file = "dd_test.csv",row.names = FALSE,na = "")
-    #
-    # View(as.data.frame(purrr::pluck(dd, "meta")))
-    #
-    # REDCapR::redcap_metadata_write(
-    #   ds = as.data.frame(purrr::pluck(dd, "meta")),
-    #   redcap_uri = "https://redcap.au.dk/api/",
-    #   token = "21CF2C17EA1CA4F3688DF991C8FE3EBF"
-    # )
-    #
-    # REDCapR::redcap_write(
-    #   ds = as.data.frame(purrr::pluck(dd, "data")),
-    #   redcap_uri = "https://redcap.au.dk/api/",
-    #   token = "21CF2C17EA1CA4F3688DF991C8FE3EBF"
-    # )
-
-    dat <- shiny::reactive({
-      shiny::req(input$ds)
-
-      read_input(input$ds$datapath)
-    })
-
-    dd <- shiny::reactive({
-      ds2dd_detailed(data = dat())
-    })
-
-
-    output$data.tbl <- shiny::renderTable({
-      dd() |>
-        purrr::pluck("data") |>
-        head(20) |>
-        dplyr::tibble()
-    })
-
-    output$meta.tbl <- shiny::renderTable({
-      dd() |>
-        purrr::pluck("meta") |>
-        dplyr::tibble()
-    })
-
-    # Downloadable csv of dataset ----
-    output$downloadData <- shiny::downloadHandler(
-      filename = "data_ready.csv",
-      content = function(file) {
-        write.csv(purrr::pluck(dd(), "data"), file, row.names = FALSE)
-      }
-    )
-
-    # Downloadable csv of data dictionary ----
-    output$downloadMeta <- shiny::downloadHandler(
-      filename = "dictionary_ready.csv",
-      content = function(file) {
-        write.csv(purrr::pluck(dd(), "meta"), file, row.names = FALSE)
-      }
-    )
-
-    output_staging <- shiny::reactiveValues()
-    output_staging$meta <- output_staging$data <- NA
-
-    shiny::observeEvent(input$upload.meta,{  upload_meta()  })
-
-    shiny::observeEvent(input$upload.data,{  upload_data()  })
-
-    upload_meta <- function(){
-      # output_staging$title <- paste0("random number ",runif(1))
-
-      shiny::req(input$uri)
-
-      shiny::req(input$api)
-
-      output_staging$meta <- REDCapR::redcap_metadata_write(
-        ds = purrr::pluck(dd(), "meta"),
-        redcap_uri = input$uri,
-        token = input$api
-      )|> purrr::pluck("success")
-    }
-
-    upload_data <- function(){
-      # output_staging$title <- paste0("random number ",runif(1))
-
-      shiny::req(input$uri)
-
-      shiny::req(input$api)
-
-      output_staging$data <- REDCapR::redcap_write(
-        ds = purrr::pluck(dd(), "data"),
-        redcap_uri = input$uri,
-        token = input$api
-      ) |> purrr::pluck("success")
-    }
-
-    output$upload.meta.print <- renderText(output_staging$meta)
-
-    output$upload.data.print <- renderText(output_staging$data)
-
-  }
+  source(here::here("app/server.R"))
+  server
 }
 
-
-
 #' UI factory for shiny app
 #'
 #' @return shiny ui
 #' @export
 ui_factory <- function() {
   # require(ggplot2)
+source(here::here("app/ui.R"))
 
-  shiny::fluidPage(
-
-    ## -----------------------------------------------------------------------------
-    ## Application title
-    ## -----------------------------------------------------------------------------
-    shiny::titlePanel("Simple REDCap data base creation and data upload from data set file via API",
-      windowTitle = "REDCap databse creator"
-    ),
-    shiny::h5("Please note, that this tool serves as a demonstration of some of the functionality
-       of the REDCapCAST package. No responsibility for data loss or any other
-       problems will be taken."),
-
-    ## -----------------------------------------------------------------------------
-    ## Side panel
-    ## -----------------------------------------------------------------------------
-
-    shiny::sidebarPanel(
-      shiny::h4("REDCap database and dataset"),
-      shiny::fileInput("ds", "Choose data file",
-        multiple = FALSE,
-        accept = c(
-          ".csv",
-          ".xls",
-          ".xlsx",
-          ".dta"
-        )
-      ),
-      shiny::h6("Below you can download the dataset formatted for upload and the
-         corresponding data dictionary for a new data base."),
-      # Button
-      shiny::downloadButton("downloadData", "Download data"),
-
-      # Button
-      shiny::downloadButton("downloadMeta", "Download dictionary"),
-
-
-      # Horizontal line ----
-      shiny::tags$hr(),
-      shiny::h4("REDCap upload"),
-      shiny::textInput(
-        inputId = "uri",
-        label = "URI",
-        value = "https://redcap.au.dk/api/"
-      ),
-      shiny::textInput(
-        inputId = "api",
-        label = "API key",
-        value = "21CF2C17EA1CA4F3688DF991C8FE3EBF"
-      ),
-      shiny::actionButton(
-        inputId = "upload.meta",
-        label = "Upload dictionary", icon = shiny::icon("book-bookmark")
-      ),
-      shiny::h6("Please note, that before uploading any real data, put your project
-         into production mode."),
-      shiny::actionButton(
-        inputId = "upload.data",
-        label = "Upload data", icon = shiny::icon("upload")
-      ),
-
-      # Horizontal line ----
-      shiny::tags$hr()
-    ),
-    shiny::mainPanel(
-      shiny::tabsetPanel(
-
-        ## -----------------------------------------------------------------------------
-        ## Summary tab
-        ## -----------------------------------------------------------------------------
-        shiny::tabPanel(
-          "Summary",
-          shiny::h3("Data overview (first 20)"),
-          shiny::htmlOutput("data.tbl", container = shiny::span),
-          shiny::h3("Dictionary overview"),
-          shiny::htmlOutput("meta.tbl", container = shiny::span)
-        ),
-        ## -----------------------------------------------------------------------------
-        ## Upload tab
-        ## -----------------------------------------------------------------------------
-        shiny::tabPanel(
-          "Upload",
-          shiny::h3("Meta upload overview"),
-          shiny::htmlOutput("upload.meta.print", container = shiny::span),
-          shiny::h3("Data upload overview"),
-          shiny::htmlOutput("upload.data.print", container = shiny::span)
-        )
-      )
-    )
-  )
 }
 
 #' Launch the included Shiny-app for database casting and upload
@@ -227,6 +34,25 @@ shiny_cast <- function() {
   )
 }
 
-shiny_cast()
-# ds <- REDCapR::redcap_metadata_read(redcap_uri = "https://redcap.au.dk/api/",
-#                                     token = "21CF2C17EA1CA4F3688DF991C8FE3EBF")
+#' Deploy the Shiny app with rsconnect
+#'
+#' @return deploy
+#' @export
+#'
+#' @examples
+#' # deploy_shiny
+#'
+deploy_shiny <- function(path=here::here("app/"), name.app="shiny_cast"){
+  # Ensure to install latest package version
+  renv::install("agdamsbo/REDCapCAST")
+
+  # Connecting
+  rsconnect::setAccountInfo(
+    name = "cognitiveindex",
+    token = keyring::key_get(service = "rsconnect_cognitiveindex_token"),
+    secret = keyring::key_get(service = "rsconnect_cognitiveindex_secret")
+  )
+
+  # Deploying
+  rsconnect::deployApp(appDir = path,lint = TRUE,appName = name.app,)
+}