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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
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<div class="d-none name"><code>Database-creation.Rmd</code></div>
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</div>
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<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
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<h2 id="easy-data-set-to-data-base-workflow">Easy data set to data base workflow<a class="anchor" aria-label="anchor" href="#easy-data-set-to-data-base-workflow"></a>
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</h2>
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<p>THe first iteration of a dataset to data dictionary function is the
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<code><a href="../reference/ds2dd.html">ds2dd()</a></code>, which creates a very basic data dictionary with
|
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all variables stored as text. This is sufficient for just storing old
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datasets/spreadsheets securely in REDCap.</p>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">mtcars</span> <span class="op">|></span></span>
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<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/context.html" class="external-link">n</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span></span>
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||||
<span> <span class="fu"><a href="../reference/ds2dd.html">ds2dd</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<p>The more advanced <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code> is a natural
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development. It will try to apply the most common data classes for data
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validation and will assume that the first column is the id number. It
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outputs a list with the dataset with modified variable names to comply
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with REDCap naming conventions and a data dictionary.</p>
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<p>The dataset should be correctly formatted for the data dictionary to
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preserve as much information as possible.</p>
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<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">dd_ls</span> <span class="op"><-</span> <span class="va">mtcars</span> <span class="op">|></span></span>
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<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span>record_id <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/context.html" class="external-link">n</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span></span>
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||||
<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="va">record_id</span>, <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://tidyselect.r-lib.org/reference/everything.html" class="external-link">everything</a></span><span class="op">(</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span></span>
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<span> <span class="fu"><a href="../reference/ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span><span class="op">)</span></span>
|
||||
<span><span class="va">dd_ls</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<p>Additional specifications to the DataDictionary can be made manually,
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or it can be uploaded and modified manually in the graphical user
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interface on the web page.</p>
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<div class="section level3">
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<h3 id="step-3---meta-data-upload">Step 3 - Meta data upload<a class="anchor" aria-label="anchor" href="#step-3---meta-data-upload"></a>
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</h3>
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<p>Now the DataDictionary can be exported as a spreadsheet and uploaded
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or it can be uploaded using the <code>REDCapR</code> package (only
|
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projects with “Development” status).</p>
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<p>Use one of the two approaches below:</p>
|
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<div class="section level4">
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<h4 id="manual-upload">Manual upload<a class="anchor" aria-label="anchor" href="#manual-upload"></a>
|
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</h4>
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<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/write.table.html" class="external-link">write.csv</a></span><span class="op">(</span><span class="va">dd_ls</span><span class="op">$</span><span class="va">meta</span>, <span class="st">"datadictionary.csv"</span><span class="op">)</span></span></code></pre></div>
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</div>
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<div class="section level4">
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<h4 id="upload-with-redcapr">Upload with <code>REDCapR</code><a class="anchor" aria-label="anchor" href="#upload-with-redcapr"></a>
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</h4>
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<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="fu">REDCapR</span><span class="fu">::</span><span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_metadata_write.html" class="external-link">redcap_metadata_write</a></span><span class="op">(</span></span>
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<span> <span class="va">dd_ls</span><span class="op">$</span><span class="va">meta</span>,</span>
|
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<span> redcap_uri <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://keyring.r-lib.org/reference/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_URI"</span><span class="op">)</span>,</span>
|
||||
<span> token <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://keyring.r-lib.org/reference/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_TOKEN"</span><span class="op">)</span></span>
|
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<span><span class="op">)</span></span></code></pre></div>
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<p>In the <a href="https://agdamsbo.github.io/redcap-r-handbook/" class="external-link">“REDCap R
|
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Handbook”</a> more is written on interfacing with REDCap in R using the
|
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<code><a href="https://keyring.r-lib.org/" class="external-link">library(keyring)</a></code>to store credentials in <a href="https://agdamsbo.github.io/redcap-r-handbook/access.html#sec-getting-access" class="external-link">chapter
|
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1.1</a>.</p>
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</div>
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</div>
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<div class="section level3">
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<h3 id="step-4---data-upload">Step 4 - Data upload<a class="anchor" aria-label="anchor" href="#step-4---data-upload"></a>
|
||||
</h3>
|
||||
<p>The same two options are available for data upload as meta data
|
||||
upload: manual or through <code>REDCapR</code>.</p>
|
||||
<p>Only the latter is shown here.</p>
|
||||
<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="fu">REDCapR</span><span class="fu">::</span><span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_write.html" class="external-link">redcap_write</a></span><span class="op">(</span></span>
|
||||
<span> <span class="va">dd_ls</span><span class="op">$</span><span class="va">data</span>,</span>
|
||||
<span> redcap_uri <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://keyring.r-lib.org/reference/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_URI"</span><span class="op">)</span>,</span>
|
||||
<span> token <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://keyring.r-lib.org/reference/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_TOKEN"</span><span class="op">)</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
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<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
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<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
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@ -98,23 +100,23 @@ demonstration of the functions.</p>
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</h2>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|></span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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|
||||
#tapeacohhi .gt_table {
|
||||
display: table;
|
||||
border-collapse: collapse;
|
||||
line-height: normal;
|
||||
|
|
@ -140,12 +142,12 @@ demonstration of the functions.</p>
|
|||
border-left-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_caption {
|
||||
#tapeacohhi .gt_caption {
|
||||
padding-top: 4px;
|
||||
padding-bottom: 4px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_title {
|
||||
#tapeacohhi .gt_title {
|
||||
color: #333333;
|
||||
font-size: 125%;
|
||||
font-weight: initial;
|
||||
|
|
@ -157,7 +159,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-width: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_subtitle {
|
||||
#tapeacohhi .gt_subtitle {
|
||||
color: #333333;
|
||||
font-size: 85%;
|
||||
font-weight: initial;
|
||||
|
|
@ -169,7 +171,7 @@ demonstration of the functions.</p>
|
|||
border-top-width: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_heading {
|
||||
#tapeacohhi .gt_heading {
|
||||
background-color: #FFFFFF;
|
||||
text-align: center;
|
||||
border-bottom-color: #FFFFFF;
|
||||
|
|
@ -181,13 +183,13 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_bottom_border {
|
||||
#tapeacohhi .gt_bottom_border {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_col_headings {
|
||||
#tapeacohhi .gt_col_headings {
|
||||
border-top-style: solid;
|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
|
|
@ -202,7 +204,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_col_heading {
|
||||
#tapeacohhi .gt_col_heading {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -222,7 +224,7 @@ demonstration of the functions.</p>
|
|||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_column_spanner_outer {
|
||||
#tapeacohhi .gt_column_spanner_outer {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -234,15 +236,15 @@ demonstration of the functions.</p>
|
|||
padding-right: 4px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_column_spanner_outer:first-child {
|
||||
#tapeacohhi .gt_column_spanner_outer:first-child {
|
||||
padding-left: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_column_spanner_outer:last-child {
|
||||
#tapeacohhi .gt_column_spanner_outer:last-child {
|
||||
padding-right: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_column_spanner {
|
||||
#tapeacohhi .gt_column_spanner {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
|
|
@ -254,11 +256,11 @@ demonstration of the functions.</p>
|
|||
width: 100%;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_spanner_row {
|
||||
#tapeacohhi .gt_spanner_row {
|
||||
border-bottom-style: hidden;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_group_heading {
|
||||
#tapeacohhi .gt_group_heading {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -284,7 +286,7 @@ demonstration of the functions.</p>
|
|||
text-align: left;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_empty_group_heading {
|
||||
#tapeacohhi .gt_empty_group_heading {
|
||||
padding: 0.5px;
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
|
|
@ -299,15 +301,15 @@ demonstration of the functions.</p>
|
|||
vertical-align: middle;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_from_md > :first-child {
|
||||
#tapeacohhi .gt_from_md > :first-child {
|
||||
margin-top: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_from_md > :last-child {
|
||||
#tapeacohhi .gt_from_md > :last-child {
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_row {
|
||||
#tapeacohhi .gt_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -326,7 +328,7 @@ demonstration of the functions.</p>
|
|||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_stub {
|
||||
#tapeacohhi .gt_stub {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -339,7 +341,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_stub_row_group {
|
||||
#tapeacohhi .gt_stub_row_group {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -353,15 +355,15 @@ demonstration of the functions.</p>
|
|||
vertical-align: top;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_row_group_first td {
|
||||
#tapeacohhi .gt_row_group_first td {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_row_group_first th {
|
||||
#tapeacohhi .gt_row_group_first th {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_summary_row {
|
||||
#tapeacohhi .gt_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
|
|
@ -371,16 +373,16 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_first_summary_row {
|
||||
#tapeacohhi .gt_first_summary_row {
|
||||
border-top-style: solid;
|
||||
border-top-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_first_summary_row.thick {
|
||||
#tapeacohhi .gt_first_summary_row.thick {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_last_summary_row {
|
||||
#tapeacohhi .gt_last_summary_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -390,7 +392,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_grand_summary_row {
|
||||
#tapeacohhi .gt_grand_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
|
|
@ -400,7 +402,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_first_grand_summary_row {
|
||||
#tapeacohhi .gt_first_grand_summary_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -410,7 +412,7 @@ demonstration of the functions.</p>
|
|||
border-top-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_last_grand_summary_row_top {
|
||||
#tapeacohhi .gt_last_grand_summary_row_top {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -420,11 +422,11 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_striped {
|
||||
#tapeacohhi .gt_striped {
|
||||
background-color: rgba(128, 128, 128, 0.05);
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_table_body {
|
||||
#tapeacohhi .gt_table_body {
|
||||
border-top-style: solid;
|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
|
|
@ -433,7 +435,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_footnotes {
|
||||
#tapeacohhi .gt_footnotes {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
border-bottom-style: none;
|
||||
|
|
@ -447,7 +449,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_footnote {
|
||||
#tapeacohhi .gt_footnote {
|
||||
margin: 0px;
|
||||
font-size: 90%;
|
||||
padding-top: 4px;
|
||||
|
|
@ -456,7 +458,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_sourcenotes {
|
||||
#tapeacohhi .gt_sourcenotes {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
border-bottom-style: none;
|
||||
|
|
@ -470,7 +472,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_sourcenote {
|
||||
#tapeacohhi .gt_sourcenote {
|
||||
font-size: 90%;
|
||||
padding-top: 4px;
|
||||
padding-bottom: 4px;
|
||||
|
|
@ -478,63 +480,63 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_left {
|
||||
#tapeacohhi .gt_left {
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_center {
|
||||
#tapeacohhi .gt_center {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_right {
|
||||
#tapeacohhi .gt_right {
|
||||
text-align: right;
|
||||
font-variant-numeric: tabular-nums;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_font_normal {
|
||||
#tapeacohhi .gt_font_normal {
|
||||
font-weight: normal;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_font_bold {
|
||||
#tapeacohhi .gt_font_bold {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_font_italic {
|
||||
#tapeacohhi .gt_font_italic {
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_super {
|
||||
#tapeacohhi .gt_super {
|
||||
font-size: 65%;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_footnote_marks {
|
||||
#tapeacohhi .gt_footnote_marks {
|
||||
font-size: 75%;
|
||||
vertical-align: 0.4em;
|
||||
position: initial;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_asterisk {
|
||||
#tapeacohhi .gt_asterisk {
|
||||
font-size: 100%;
|
||||
vertical-align: 0;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_indent_1 {
|
||||
#tapeacohhi .gt_indent_1 {
|
||||
text-indent: 5px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_indent_2 {
|
||||
#tapeacohhi .gt_indent_2 {
|
||||
text-indent: 10px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_indent_3 {
|
||||
#tapeacohhi .gt_indent_3 {
|
||||
text-indent: 15px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_indent_4 {
|
||||
#tapeacohhi .gt_indent_4 {
|
||||
text-indent: 20px;
|
||||
}
|
||||
|
||||
#fypiqpxsxm .gt_indent_5 {
|
||||
#tapeacohhi .gt_indent_5 {
|
||||
text-indent: 25px;
|
||||
}
|
||||
</style>
|
||||
|
|
@ -1065,23 +1067,23 @@ demonstration of the functions.</p>
|
|||
</div>
|
||||
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|></span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||
<div id="yakcmvvbbq" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||
<style>#yakcmvvbbq table {
|
||||
<div id="xreuzzriun" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||
<style>#xreuzzriun table {
|
||||
font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';
|
||||
-webkit-font-smoothing: antialiased;
|
||||
-moz-osx-font-smoothing: grayscale;
|
||||
}
|
||||
|
||||
#yakcmvvbbq thead, #yakcmvvbbq tbody, #yakcmvvbbq tfoot, #yakcmvvbbq tr, #yakcmvvbbq td, #yakcmvvbbq th {
|
||||
#xreuzzriun thead, #xreuzzriun tbody, #xreuzzriun tfoot, #xreuzzriun tr, #xreuzzriun td, #xreuzzriun th {
|
||||
border-style: none;
|
||||
}
|
||||
|
||||
#yakcmvvbbq p {
|
||||
#xreuzzriun p {
|
||||
margin: 0;
|
||||
padding: 0;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_table {
|
||||
#xreuzzriun .gt_table {
|
||||
display: table;
|
||||
border-collapse: collapse;
|
||||
line-height: normal;
|
||||
|
|
@ -1107,12 +1109,12 @@ demonstration of the functions.</p>
|
|||
border-left-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_caption {
|
||||
#xreuzzriun .gt_caption {
|
||||
padding-top: 4px;
|
||||
padding-bottom: 4px;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_title {
|
||||
#xreuzzriun .gt_title {
|
||||
color: #333333;
|
||||
font-size: 125%;
|
||||
font-weight: initial;
|
||||
|
|
@ -1124,7 +1126,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-width: 0;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_subtitle {
|
||||
#xreuzzriun .gt_subtitle {
|
||||
color: #333333;
|
||||
font-size: 85%;
|
||||
font-weight: initial;
|
||||
|
|
@ -1136,7 +1138,7 @@ demonstration of the functions.</p>
|
|||
border-top-width: 0;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_heading {
|
||||
#xreuzzriun .gt_heading {
|
||||
background-color: #FFFFFF;
|
||||
text-align: center;
|
||||
border-bottom-color: #FFFFFF;
|
||||
|
|
@ -1148,13 +1150,13 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_bottom_border {
|
||||
#xreuzzriun .gt_bottom_border {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_col_headings {
|
||||
#xreuzzriun .gt_col_headings {
|
||||
border-top-style: solid;
|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
|
|
@ -1169,7 +1171,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_col_heading {
|
||||
#xreuzzriun .gt_col_heading {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1189,7 +1191,7 @@ demonstration of the functions.</p>
|
|||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_column_spanner_outer {
|
||||
#xreuzzriun .gt_column_spanner_outer {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1201,15 +1203,15 @@ demonstration of the functions.</p>
|
|||
padding-right: 4px;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_column_spanner_outer:first-child {
|
||||
#xreuzzriun .gt_column_spanner_outer:first-child {
|
||||
padding-left: 0;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_column_spanner_outer:last-child {
|
||||
#xreuzzriun .gt_column_spanner_outer:last-child {
|
||||
padding-right: 0;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_column_spanner {
|
||||
#xreuzzriun .gt_column_spanner {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
|
|
@ -1221,11 +1223,11 @@ demonstration of the functions.</p>
|
|||
width: 100%;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_spanner_row {
|
||||
#xreuzzriun .gt_spanner_row {
|
||||
border-bottom-style: hidden;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_group_heading {
|
||||
#xreuzzriun .gt_group_heading {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1251,7 +1253,7 @@ demonstration of the functions.</p>
|
|||
text-align: left;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_empty_group_heading {
|
||||
#xreuzzriun .gt_empty_group_heading {
|
||||
padding: 0.5px;
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
|
|
@ -1266,15 +1268,15 @@ demonstration of the functions.</p>
|
|||
vertical-align: middle;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_from_md > :first-child {
|
||||
#xreuzzriun .gt_from_md > :first-child {
|
||||
margin-top: 0;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_from_md > :last-child {
|
||||
#xreuzzriun .gt_from_md > :last-child {
|
||||
margin-bottom: 0;
|
||||
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|
||||
|
||||
#yakcmvvbbq .gt_row {
|
||||
#xreuzzriun .gt_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1293,7 +1295,7 @@ demonstration of the functions.</p>
|
|||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_stub {
|
||||
#xreuzzriun .gt_stub {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1306,7 +1308,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_stub_row_group {
|
||||
#xreuzzriun .gt_stub_row_group {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
|
|
@ -1320,15 +1322,15 @@ demonstration of the functions.</p>
|
|||
vertical-align: top;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_row_group_first td {
|
||||
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|
||||
border-top-width: 2px;
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|
||||
|
||||
#yakcmvvbbq .gt_row_group_first th {
|
||||
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|
||||
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|
||||
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#xreuzzriun .gt_summary_row {
|
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|
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background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
|
|
@ -1338,16 +1340,16 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_first_summary_row {
|
||||
#xreuzzriun .gt_first_summary_row {
|
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border-top-style: solid;
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border-top-color: #D3D3D3;
|
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}
|
||||
|
||||
#yakcmvvbbq .gt_first_summary_row.thick {
|
||||
#xreuzzriun .gt_first_summary_row.thick {
|
||||
border-top-width: 2px;
|
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}
|
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|
||||
#yakcmvvbbq .gt_last_summary_row {
|
||||
#xreuzzriun .gt_last_summary_row {
|
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padding-top: 8px;
|
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padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
|
|
@ -1357,7 +1359,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_grand_summary_row {
|
||||
#xreuzzriun .gt_grand_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
|
|
@ -1367,7 +1369,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_first_grand_summary_row {
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|
@ -1377,7 +1379,7 @@ demonstration of the functions.</p>
|
|||
border-top-color: #D3D3D3;
|
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|
||||
|
||||
#yakcmvvbbq .gt_last_grand_summary_row_top {
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|
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|
|
@ -1387,11 +1389,11 @@ demonstration of the functions.</p>
|
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border-bottom-color: #D3D3D3;
|
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}
|
||||
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#yakcmvvbbq .gt_striped {
|
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|
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|
||||
|
|
@ -1400,7 +1402,7 @@ demonstration of the functions.</p>
|
|||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_footnotes {
|
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|
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|
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|
||||
border-bottom-style: none;
|
||||
|
|
@ -1414,7 +1416,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_footnote {
|
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|
||||
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|
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||||
padding-top: 4px;
|
||||
|
|
@ -1423,7 +1425,7 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
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|
||||
|
||||
#yakcmvvbbq .gt_sourcenotes {
|
||||
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|
||||
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|
||||
background-color: #FFFFFF;
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||||
border-bottom-style: none;
|
||||
|
|
@ -1437,7 +1439,7 @@ demonstration of the functions.</p>
|
|||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_sourcenote {
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||||
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|
||||
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|
|
@ -1445,63 +1447,63 @@ demonstration of the functions.</p>
|
|||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#yakcmvvbbq .gt_left {
|
||||
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||||
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|
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|
||||
|
||||
#yakcmvvbbq .gt_center {
|
||||
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|
||||
text-align: center;
|
||||
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|
||||
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||||
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||||
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||||
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||||
#yakcmvvbbq .gt_indent_5 {
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||||
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||||
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|
||||
</style>
|
||||
|
|
|
|||
127
articles/Shiny-app.html
Normal file
127
articles/Shiny-app.html
Normal file
|
|
@ -0,0 +1,127 @@
|
|||
<!DOCTYPE html>
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||||
<!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png">
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||||
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<script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
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<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
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||||
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||||
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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||||
</head>
|
||||
<body>
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||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
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||||
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<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.2.1</small>
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</nav><div class="container template-article">
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||||
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||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Shiny-app</h1>
|
||||
|
||||
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
|
||||
<div class="d-none name"><code>Shiny-app.Rmd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
|
||||
<p>To make the easiest possible transistion from spreadsheet/dataset to
|
||||
REDCap, I have created a small Shiny app, which adds a graphical
|
||||
interface to the casting of a data dictionary and data upload. Install
|
||||
the package and run the app as follows:</p>
|
||||
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
|
||||
<span><span class="fu"><a href="../reference/shiny_cast.html">shiny_cast</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||
<p>The app will launch in a new window and the interface should be
|
||||
fairly self-explanatory. The app only provides the most basic
|
||||
functionality, but might be extended in the future.</p>
|
||||
</main>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p></p>
|
||||
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p></p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
|
||||
</div>
|
||||
|
||||
</footer>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body>
|
||||
</html>
|
||||
|
|
@ -24,7 +24,9 @@
|
|||
<li class="nav-item dropdown">
|
||||
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
|
||||
<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a>
|
||||
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
|
||||
<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
|
||||
</div>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
|
|
@ -53,7 +55,11 @@
|
|||
<h3>All vignettes</h3>
|
||||
<p class="section-desc"></p>
|
||||
|
||||
<dl><dt><a href="Introduction.html">Introduction</a></dt>
|
||||
<dl><dt><a href="Database-creation.html">Database-creation</a></dt>
|
||||
<dd>
|
||||
</dd><dt><a href="Introduction.html">Introduction</a></dt>
|
||||
<dd>
|
||||
</dd><dt><a href="Shiny-app.html">Shiny-app</a></dt>
|
||||
<dd>
|
||||
</dd></dl></div>
|
||||
</main></div>
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue