mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2026-06-19 13:17:30 +02:00
Initial Commit
This commit is contained in:
commit
504a414ce6
3 changed files with 271 additions and 0 deletions
53
README.md
Normal file
53
README.md
Normal file
|
|
@ -0,0 +1,53 @@
|
|||
REDCap Repeating Instrument Table Splitter
|
||||
===========================================
|
||||
|
||||
Paul W. Egeler, M.S., GStat
|
||||
Spectrum Health Office of Research Administration
|
||||
13 July 2017
|
||||
|
||||
## Description
|
||||
|
||||
So the new buzz in the REDCap world seems to be Repeating Instruments
|
||||
and Events. Certainly there is potential for a lot of utility in this
|
||||
feature and I was excited to try it out. I know I will be using this
|
||||
feature a lot in the future.
|
||||
|
||||
Unfortunately, I was not very happy with the way the data was exported
|
||||
either via CSV or API call. When you conceptualize the data model for
|
||||
a Repeating Instrument, you probably think of a multi-table model. You
|
||||
might expect that the non-repeating instruments may constitute one table
|
||||
that would be related to Repeating Instruments tables via a one-to-many
|
||||
relationship. In reality, the data is outputted as one table with all
|
||||
possible fields; this has the effect of nesting the output table in a
|
||||
way that is not useful in most analysis software. Therefore, I have made
|
||||
a solution to handle the problem in both SAS and R.
|
||||
|
||||
## Instructions
|
||||
|
||||
### SAS
|
||||
|
||||
1. Run the macro definition in the source editor or using `%include`.
|
||||
2. Run the SAS code provided by REDCap to import the data BUT COMMENT
|
||||
THIS LINE:
|
||||
`format redcap_repeat_instrument redcap_repeat_instrument_.;`
|
||||
3. Open the data dictionary in MS Excel. We will need to do some pre-
|
||||
processing to the data dictionary file before reading it in because
|
||||
some of the user entry points (such as **Field Label**) allows for newline
|
||||
characters, which can break our data ingestion. MS Excel will read in
|
||||
the newline characters correctly.
|
||||
- Copy the first four columns and paste into a new sheet.
|
||||
- Save the new sheet as a .csv file.
|
||||
- Close the file.
|
||||
4. Call the macro, adjusting parameters as needed.
|
||||
|
||||
### R
|
||||
|
||||
The function definition file contains an example to assist you.
|
||||
|
||||
1. Run the function definition in the source editor or using `source()`.
|
||||
2. Download the record dataset and metadata and import them. This can
|
||||
be accomplished either by traditional methods or using the API. The
|
||||
`read.csv()` function should be able to handle newline characters within
|
||||
records, so no pre-processing of metadata csv is needed.
|
||||
3. Call the function, pointing it to your record dataset and metadata
|
||||
`data.frame`s.
|
||||
Loading…
Add table
Add a link
Reference in a new issue