Deploying to gh-pages from @ agdamsbo/REDCapCAST@30d82e5288 🚀

This commit is contained in:
agdamsbo 2024-11-28 13:44:19 +00:00
commit 4fe8a0d73c
19 changed files with 1122 additions and 250 deletions

View file

@ -1,7 +1,11 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Redcap Wider — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Redcap Wider — redcap_wider"><meta name="description" content="Converts a list of REDCap data frames from long to wide format.
Handles longitudinal projects, but not yet repeated instruments."><meta property="og:description" content="Converts a list of REDCap data frames from long to wide format.
Handles longitudinal projects, but not yet repeated instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider"><meta name="description" content="Converts a list of REDCap data.frames from long to wide format.
In essence it is a wrapper for the pivot_wider function applied
on a REDCap output (from read_redcap_tables) or manually
split by REDCap_split."><meta property="og:description" content="Converts a list of REDCap data.frames from long to wide format.
In essence it is a wrapper for the pivot_wider function applied
on a REDCap output (from read_redcap_tables) or manually
split by REDCap_split."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@ -35,14 +39,16 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
</nav><div class="container template-reference-topic">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Redcap Wider</h1>
<img src="../logo.png" class="logo" alt=""><h1>Transforms list of REDCap data.frames to a single wide data.frame</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
<div class="d-none name"><code>redcap_wider.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Converts a list of REDCap data frames from long to wide format.
Handles longitudinal projects, but not yet repeated instruments.</p>
<p>Converts a list of REDCap data.frames from long to wide format.
In essence it is a wrapper for the <a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">pivot_wider</a> function applied
on a REDCap output (from <a href="read_redcap_tables.html">read_redcap_tables</a>) or manually
split by <a href="REDCap_split.html">REDCap_split</a>.</p>
</div>
<div class="section level2">
@ -59,20 +65,20 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>A list of data frames.</p></dd>
<dd><p>A list of data frames</p></dd>
<dt id="arg-event-glue">event.glue<a class="anchor" aria-label="anchor" href="#arg-event-glue"></a></dt>
<dd><p>A dplyr::glue string for repeated events naming</p></dd>
<dd><p>A <a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a> string for repeated events naming</p></dd>
<dt id="arg-inst-glue">inst.glue<a class="anchor" aria-label="anchor" href="#arg-inst-glue"></a></dt>
<dd><p>A dplyr::glue string for repeated instruments naming</p></dd>
<dd><p>A <a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a> string for repeated instruments naming</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>The list of data frames in wide format.</p>
<p>data.frame in wide format</p>
</div>
<div class="section level2">
@ -92,9 +98,11 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list1</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 2 × 4</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id age_baseline age_followup gender</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1 25 27 male</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 2 26 28 female</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> 1 25 27 male </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> 2 26 28 female</span>
<span class="r-in"><span><span class="co"># Simpel with two instruments</span></span></span>
<span class="r-in"><span><span class="va">list2</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span></span>
@ -146,12 +154,13 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list4</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Joining with `by = join_by(record_id)`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 2 × 8</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id age_baseline age_followup dist_1_baseline dist_1_followup</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 1 25 27 40 25</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 2 26 28 28 23</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> dist_2_baseline dist_2_followup gender</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 1 32 33 male</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 2 24 36 female</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> 1 25 27 40 25</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> 2 26 28 28 23</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 3 more variables: dist_2_baseline &lt;dbl&gt;, dist_2_followup &lt;dbl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># gender &lt;chr&gt;</span></span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>