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Andreas Gammelgaard Damsbo 2024-10-24 11:41:48 +02:00
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7 changed files with 109 additions and 28 deletions
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45
R/ds2dd_detailed.R
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@ -117,7 +117,7 @@ hms2character <- function(data) {
#' ncol(data). Default is NULL and "data" is used.
#' @param form.sep If supplied dataset has form names as suffix or prefix to the
#' column/variable names, the seperator can be specified. If supplied, the
#' form.sep is ignored. Default is NULL.
#' form.name is ignored. Default is NULL.
#' @param form.prefix Flag to set if form is prefix (TRUE) or suffix (FALSE) to
#' the column names. Assumes all columns have pre- or suffix if specified.
#' @param field.type manually specify field type(s). Vector of length 1 or
@ -149,13 +149,19 @@ hms2character <- function(data) {
#' data |> ds2dd_detailed(validate.time = TRUE)
#' data |> ds2dd_detailed()
#' iris |> ds2dd_detailed(add.auto.id = TRUE)
#' iris |>
#' ds2dd_detailed(
#' add.auto.id = TRUE,
#' form.name = sample(c("b", "c"), size = 6, replace = TRUE, prob = rep(.5, 2))
#' ) |>
#' purrr::pluck("meta")
#' mtcars |> ds2dd_detailed(add.auto.id = TRUE)
#' data <- iris |>
#' ds2dd_detailed(add.auto.id = TRUE) |>
#' purrr::pluck("data")
#' names(data) <- glue::glue("{sample(x = c('a','b'),size = length(names(data)),
#' replace=TRUE,prob = rep(x=.5,2))}__{names(data)}")
#' data |> ds2dd_detailed(form.sep="__")
#' data |> ds2dd_detailed(form.sep = "__")
ds2dd_detailed <- function(data,
add.auto.id = FALSE,
date.format = "dmy",
@ -229,27 +235,34 @@ ds2dd_detailed <- function(data,
## form_name and field_name
if (!is.null(form.sep)) {
if (form.sep!=""){
suppressMessages(nms <- strsplit(names(data), split = form.sep) |>
dplyr::bind_cols())
## Assumes form.sep only occurs once and form.prefix defines if form is prefix or suffix
dd$form_name <- clean_redcap_name(dplyr::slice(nms,ifelse(form.prefix, 1, 2)))
## The other split part is used as field names
dd$field_name <- dplyr::slice(nms,ifelse(!form.prefix, 1, 2)) |> as.character()
if (form.sep != "") {
parts <- strsplit(names(data), split = form.sep)
## form.sep should be unique, but handles re-occuring pattern (by only considering first or last) and form.prefix defines if form is prefix or suffix
## The other split part is used as field names
if (form.prefix){
dd$form_name <- clean_redcap_name(Reduce(c,lapply(parts,\(.x) .x[[1]])))
dd$field_name <- Reduce(c,lapply(parts,\(.x) paste(.x[seq_len(length(.x))[-1]],collapse=form.sep)))
} else {
dd$form_name <- clean_redcap_name(Reduce(c,lapply(parts,\(.x) .x[[length(.x)]])))
dd$field_name <- Reduce(c,lapply(parts,\(.x) paste(.x[seq_len(length(.x)-1)],collapse=form.sep)))
}
} else {
dd$form_name <- "data"
dd$field_name <- gsub(" ", "_", tolower(colnames(data)))
}
} else if (is.null(form.sep)) {
} else {
## if no form name prefix, the colnames are used as field_names
dd$field_name <- gsub(" ", "_", tolower(colnames(data)))
} else if (is.null(form.name)) {
dd$form_name <- "data"
} else {
if (length(form.name) == 1 || length(form.name) == nrow(dd)) {
dd$form_name <- form.name
if (is.null(form.name)) {
dd$form_name <- "data"
} else {
stop("Length of supplied 'form.name' has to be one (1) or ncol(data).")
if (length(form.name) == 1 || length(form.name) == nrow(dd)) {
dd$form_name <- form.name
} else {
stop("Length of supplied 'form.name' has to be one (1) or ncol(data).")
}
}
}