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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This will take output from a REDCap export and split it into a base table
and child tables for each repeating instrument. Metadata
is used to determine which fields should be included in each resultant table."><title>Split REDCap repeating instruments table into multiple tables — REDCap_split • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Split REDCap repeating instruments table into multiple tables — REDCap_split"><meta property="og:description" content="This will take output from a REDCap export and split it into a base table
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and child tables for each repeating instrument. Metadata
is used to determine which fields should be included in each resultant table."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<img src="../logo.png" class="logo" alt=""><h1>List-base regex case_when</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>case_match_regex_list.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Mimics case_when for list of regex patterns and values. Used for date/time
validation generation from name vector. Like case_when, the matches are in
order of priority.
Primarily used in REDCapCAST to do data type coding from systematic variable
naming.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">case_match_regex_list</span><span class="op">(</span><span class="va">data</span>, <span class="va">match.list</span>, .default <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>vector</p></dd>
<dt>match.list</dt>
<dd><p>list of case matches</p></dd>
<dt>.default</dt>
<dd><p>Default value for non-matches. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">case_match_regex_list</span><span class="op">(</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"test_date"</span>, <span class="st">"test_time"</span>, <span class="st">"test_tida"</span>, <span class="st">"test_tid"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>date_dmy <span class="op">=</span> <span class="st">"_dat[eo]$"</span>, time_hh_mm_ss <span class="op">=</span> <span class="st">"_ti[md]e?$"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "date_dmy" "time_hh_mm_ss" NA "time_hh_mm_ss"</span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2choice.Rd</code></div>
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<div class="ref-description section level2">
<p>Simple function to generate REDCap choices from character vector</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">char2choice</span><span class="op">(</span><span class="va">data</span>, char.split <span class="op">=</span> <span class="st">"/"</span>, raw <span class="op">=</span> <span class="cn">NULL</span>, .default <span class="op">=</span> <span class="cn">NA</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>vector</p></dd>
<dt>char.split</dt>
<dd><p>splitting character(s)</p></dd>
<dt>raw</dt>
<dd><p>specific values. Can be used for options of same length.</p></dd>
<dt>.default</dt>
<dd><p>default value for missing. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">char2choice</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"yes/no"</span>,<span class="st">" yep. / nope "</span>,<span class="st">""</span>,<span class="cn">NA</span>,<span class="st">"what"</span><span class="op">)</span>,.default<span class="op">=</span><span class="cn">NA</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "1, yes | 2, no" "1, yep. | 2, nope" NA </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [4] NA "1, what" </span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2cond.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Simple function to generate REDCap branching logic from character vector</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">char2cond</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> minor.split <span class="op">=</span> <span class="st">","</span>,</span>
<span> major.split <span class="op">=</span> <span class="st">";"</span>,</span>
<span> major.sep <span class="op">=</span> <span class="st">" or "</span>,</span>
<span> .default <span class="op">=</span> <span class="cn">NA</span></span>
<span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>vector</p></dd>
<dt>minor.split</dt>
<dd><p>minor split</p></dd>
<dt>major.split</dt>
<dd><p>major split</p></dd>
<dt>major.sep</dt>
<dd><p>argument separation. Default is " or ".</p></dd>
<dt>.default</dt>
<dd><p>default value for missing. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co">#data &lt;- dd_inst$betingelse</span></span></span>
<span class="r-in"><span><span class="co">#c("Extubation_novent, 2; Pacu_delay, 1") |&gt; char2cond()</span></span></span>
<span class="r-in"></span>
</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>create_html_table.Rd</code></div>
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<div class="ref-description section level2">
<p>Create two-column HTML table for data piping in REDCap instruments</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">create_html_table</span><span class="op">(</span><span class="va">text</span>, <span class="va">variable</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>text</dt>
<dd><p>descriptive text</p></dd>
<dt>variable</dt>
<dd><p>variable to pipe</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">create_html_table</span><span class="op">(</span>text <span class="op">=</span> <span class="st">"Patient ID"</span>, variable <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"[cpr]"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;table style="border-collapse: collapse; width: 100%;" border="0"&gt; &lt;tbody&gt;&lt;tr&gt; &lt;td style="width: 58%;"&gt; &lt;h5&gt;&lt;span style="font-weight: normal;"&gt;Patient ID&lt;br /&gt;&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;td style="width: 42%; text-align: left;"&gt; &lt;h5&gt;&lt;span style="font-weight: bold;"&gt;[cpr]&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;/tr&gt;&lt;/tbody&gt; &lt;/table&gt;</span>
<span class="r-in"><span><span class="fu">create_html_table</span><span class="op">(</span>text <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste</a></span><span class="op">(</span><span class="st">"assessor"</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">2</span>, sep <span class="op">=</span> <span class="st">"_"</span><span class="op">)</span>, variable <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"[cpr]"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;table style="border-collapse: collapse; width: 100%;" border="0"&gt; &lt;tbody&gt;&lt;tr&gt; &lt;td style="width: 58%;"&gt; &lt;h5&gt;&lt;span style="font-weight: normal;"&gt;assessor_1&lt;br /&gt;&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;td style="width: 42%; text-align: left;"&gt; &lt;h5&gt;&lt;span style="font-weight: bold;"&gt;[cpr]&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;/tr&gt;&lt;tr&gt; &lt;td style="width: 58%;"&gt; &lt;h5&gt;&lt;span style="font-weight: normal;"&gt;assessor_2&lt;br /&gt;&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;td style="width: 42%; text-align: left;"&gt; &lt;h5&gt;&lt;span style="font-weight: bold;"&gt;[cpr]&lt;/span&gt;&lt;/h5&gt; &lt;/td&gt; &lt;/tr&gt;&lt;/tbody&gt; &lt;/table&gt;</span>
<span class="r-in"><span><span class="co"># create_html_table(text = c("CPR nummer","Word"), variable = c("[cpr][1]", "[cpr][2]", "[test]"))</span></span></span>
</code></pre></div>
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initial design phase. If you want to later add new instruments, this can be
used to add instrument(s) to a project in production."><title>Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create zips file with necessary content based on data set — create_instrument_meta"><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
used to add instrument(s) to a project in production."><title>Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create zips file with necessary content based on data set — create_instrument_meta"><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
initial design phase. If you want to later add new instruments, this can be
used to add instrument(s) to a project in production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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@ -14,7 +14,7 @@ used to add instrument(s) to a project in production."><meta property="og:image"
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -117,11 +117,11 @@ Default is TRUE.</p></dd>
<footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div>
<div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
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8
reference/d2w.html
View file

@ -1,5 +1,5 @@
<!DOCTYPE html>
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<![endif]--></head><body>
@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -120,11 +120,11 @@
<footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div>
<div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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199
reference/doc2dd.html Normal file
View file

@ -0,0 +1,199 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Works well with `project.aid::docx2list()`.
Allows defining a database in a text document (see provided template) for
an easier to use data base creation. This approach allows easier
collaboration when defining the database. The generic case is a data frame
with variable names as values in a column. This is a format like the REDCap
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<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>doc2dd.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Works well with `project.aid::docx2list()`.
Allows defining a database in a text document (see provided template) for
an easier to use data base creation. This approach allows easier
collaboration when defining the database. The generic case is a data frame
with variable names as values in a column. This is a format like the REDCap
data dictionary, but gives a few options for formatting.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">doc2dd</span><span class="op">(</span></span>
<span> <span class="va">data</span>,</span>
<span> <span class="va">instrument.name</span>,</span>
<span> col.variables <span class="op">=</span> <span class="fl">1</span>,</span>
<span> list.datetime.format <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>date_dmy <span class="op">=</span> <span class="st">"_dat[eo]$"</span>, time_hh_mm_ss <span class="op">=</span> <span class="st">"_ti[md]e?$"</span><span class="op">)</span>,</span>
<span> col.description <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> col.condition <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> col.subheader <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> subheader.tag <span class="op">=</span> <span class="st">"h2"</span>,</span>
<span> condition.minor.sep <span class="op">=</span> <span class="st">","</span>,</span>
<span> condition.major.sep <span class="op">=</span> <span class="st">";"</span>,</span>
<span> col.calculation <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> col.choices <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> choices.char.sep <span class="op">=</span> <span class="st">"/"</span>,</span>
<span> missing.default <span class="op">=</span> <span class="cn">NA</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>tibble or data.frame with all variable names in one column</p></dd>
<dt>instrument.name</dt>
<dd><p>character vector length one. Instrument name.</p></dd>
<dt>col.variables</dt>
<dd><p>variable names column (default = 1), allows dplyr
subsetting</p></dd>
<dt>list.datetime.format</dt>
<dd><p>formatting for date/time detection.
See `case_match_regex_list()`</p></dd>
<dt>col.description</dt>
<dd><p>descriptions column, allows dplyr
subsetting. If empty, variable names will be used.</p></dd>
<dt>col.condition</dt>
<dd><p>conditions for branching column, allows dplyr
subsetting. See `char2cond()`.</p></dd>
<dt>col.subheader</dt>
<dd><p>sub-header column, allows dplyr subsetting.
See `format_subheader()`.</p></dd>
<dt>subheader.tag</dt>
<dd><p>formatting tag. Default is "h2"</p></dd>
<dt>condition.minor.sep</dt>
<dd><p>condition split minor. See `char2cond()`.
Default is ",".</p></dd>
<dt>condition.major.sep</dt>
<dd><p>condition split major. See `char2cond()`.
Default is ";".</p></dd>
<dt>col.calculation</dt>
<dd><p>calculations column. Has to be written exact.
Character vector.</p></dd>
<dt>col.choices</dt>
<dd><p>choices column. See `char2choice()`.</p></dd>
<dt>choices.char.sep</dt>
<dd><p>choices split. See `char2choice()`. Default is "/".</p></dd>
<dt>missing.default</dt>
<dd><p>value for missing fields. Default is NA.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>tibble or data.frame (same as data)</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># data &lt;- dd_inst</span></span></span>
<span class="r-in"><span><span class="co"># data |&gt; doc2dd(instrument.name = "evt",</span></span></span>
<span class="r-in"><span><span class="co"># col.description = 3,</span></span></span>
<span class="r-in"><span><span class="co"># col.condition = 4,</span></span></span>
<span class="r-in"><span><span class="co"># col.subheader = 2,</span></span></span>
<span class="r-in"><span><span class="co"># col.calculation = 5,</span></span></span>
<span class="r-in"><span><span class="co"># col.choices = 6)</span></span></span>
<span class="r-in"></span>
</code></pre></div>
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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@ -49,7 +49,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>file_extension.Rd</code></div>
</div>
@ -88,11 +88,11 @@
<footer><div class="pkgdown-footer-left">
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div>
<div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
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<img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>format_subheader.Rd</code></div>
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<p>Sub-header formatting wrapper</p>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">format_subheader</span><span class="op">(</span><span class="va">data</span>, tag <span class="op">=</span> <span class="st">"h2"</span><span class="op">)</span></span></code></pre></div>
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>character vector</p></dd>
<dt>tag</dt>
<dd><p>character vector length 1</p></dd>
</dl></div>
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"Instrument header"</span> <span class="op">|&gt;</span> <span class="fu">format_subheader</span><span class="op">(</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="rich-text-field-label"&gt;&lt;h2&gt;Instrument header&lt;/h2&gt;&lt;/div&gt;</span>
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reference/get_api_key.html
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reference/get_id_name.html
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8
reference/guess_time_only_filter.html
View file

@ -2,7 +2,7 @@
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hoping for a tiny bit of naming consistency. R does not include a time-only
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has to be converted to character class before REDCap upload.'><title>Try at determining which are true time only variables — guess_time_only_filter • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Try at determining which are true time only variables — guess_time_only_filter"><meta property="og:description" content='This is just a try at guessing data type based on data class and column names
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8
reference/hms2character.html
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<img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>html_tag_wrap.Rd</code></div>
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<div class="ref-description section level2">
<p>Simple html tag wrapping for REDCap text formatting</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">html_tag_wrap</span><span class="op">(</span><span class="va">data</span>, tag <span class="op">=</span> <span class="st">"h2"</span>, extra <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>character vector</p></dd>
<dt>tag</dt>
<dd><p>character vector length 1</p></dd>
<dt>extra</dt>
<dd><p>character vector</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>character vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">html_tag_wrap</span><span class="op">(</span><span class="st">"Titel"</span>, tag <span class="op">=</span> <span class="st">"div"</span>, extra <span class="op">=</span> <span class="st">'class="rich-text-field-label"'</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div class="rich-text-field-label"&gt;Titel&lt;/div&gt;</span>
<span class="r-in"><span><span class="fu">html_tag_wrap</span><span class="op">(</span><span class="st">"Titel"</span>, tag <span class="op">=</span> <span class="st">"h2"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;h2&gt;Titel&lt;/h2&gt;</span>
</code></pre></div>
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<![endif]--></head><body>
@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -69,11 +69,31 @@
<dd>Split REDCap repeating instruments table into multiple tables</dd>
</dl><dl><dt>
<code><a href="case_match_regex_list.html">case_match_regex_list()</a></code>
</dt>
<dd>List-base regex case_when</dd>
</dl><dl><dt>
<code><a href="char2choice.html">char2choice()</a></code>
</dt>
<dd>Simple function to generate REDCap choices from character vector</dd>
</dl><dl><dt>
<code><a href="char2cond.html">char2cond()</a></code>
</dt>
<dd>Simple function to generate REDCap branching logic from character vector</dd>
</dl><dl><dt>
<code><a href="clean_redcap_name.html">clean_redcap_name()</a></code>
</dt>
<dd>clean_redcap_name</dd>
</dl><dl><dt>
<code><a href="create_html_table.html">create_html_table()</a></code>
</dt>
<dd>Create two-column HTML table for data piping in REDCap instruments</dd>
</dl><dl><dt>
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
</dt>
<dd>Create zips file with necessary content based on data set</dd>
@ -84,6 +104,11 @@
<dd>Convert single digits to words</dd>
</dl><dl><dt>
<code><a href="doc2dd.html">doc2dd()</a></code>
</dt>
<dd>Doc table to data dictionary - EARLY, DOCS MISSING</dd>
</dl><dl><dt>
<code><a href="ds2dd.html">ds2dd()</a></code>
</dt>
<dd>(DEPRECATED) Data set to data dictionary function</dd>
@ -109,6 +134,11 @@
<dd>focused_metadata</dd>
</dl><dl><dt>
<code><a href="format_subheader.html">format_subheader()</a></code>
</dt>
<dd>Sub-header formatting wrapper</dd>
</dl><dl><dt>
<code><a href="get_api_key.html">get_api_key()</a></code>
</dt>
<dd>Retrieve project API key if stored, if not, set and retrieve</dd>
@ -129,6 +159,16 @@
<dd>Change "hms" to "character" for REDCap upload.</dd>
</dl><dl><dt>
<code><a href="html_tag_wrap.html">html_tag_wrap()</a></code>
</dt>
<dd>Simple html tag wrapping for REDCap text formatting</dd>
</dl><dl><dt>
<code><a href="is_missing.html">is_missing()</a></code>
</dt>
<dd>Multi missing check</dd>
</dl><dl><dt>
<code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code>
</dt>
<dd>Test if repeatable or longitudinal</dd>
@ -149,6 +189,31 @@
<dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd>
</dl><dl><dt>
<code><a href="process_user_input.html">process_user_input()</a></code>
</dt>
<dd>User input processing</dd>
</dl><dl><dt>
<code><a href="process_user_input.character.html">process_user_input(<i>&lt;character&gt;</i>)</a></code>
</dt>
<dd>User input processing character</dd>
</dl><dl><dt>
<code><a href="process_user_input.data.frame.html">process_user_input(<i>&lt;data.frame&gt;</i>)</a></code>
</dt>
<dd>User input processing data.frame</dd>
</dl><dl><dt>
<code><a href="process_user_input.default.html">process_user_input(<i>&lt;default&gt;</i>)</a></code>
</dt>
<dd>User input processing default</dd>
</dl><dl><dt>
<code><a href="process_user_input.response.html">process_user_input(<i>&lt;response&gt;</i>)</a></code>
</dt>
<dd>User input processing response</dd>
</dl><dl><dt>
<code><a href="read_input.html">read_input()</a></code>
</dt>
<dd>Flexible file import based on extension</dd>
@ -217,11 +282,11 @@
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<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div>
<div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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101
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@ -0,0 +1,101 @@
<!DOCTYPE html>
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<img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>is_missing.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Multi missing check</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">is_missing</span><span class="op">(</span><span class="va">data</span>, nas <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">""</span>, <span class="st">"NA"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>character vector</p></dd>
<dt>nas</dt>
<dd><p>character vector of strings considered as NA</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>logical vector</p>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.character.Rd</code></div>
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<div class="ref-description section level2">
<p>User input processing character</p>
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for character</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.data.frame.Rd</code></div>
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<div class="ref-description section level2">
<p>User input processing data.frame</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for data.frame</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.default.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>User input processing default</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for default</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
</div>
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<footer><div class="pkgdown-footer-left">
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<img src="../logo.png" class="logo" alt=""><h1>User input processing</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>User input processing</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">process_user_input</span><span class="op">(</span><span class="va">x</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.response.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>User input processing response</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for response</span></span>
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>input</p></dd>
<dt>...</dt>
<dd><p>ignored</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>processed input</p>
</div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
</nav></aside></div>
<footer><div class="pkgdown-footer-left">
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div>
<div class="pkgdown-footer-right">
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.5.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -49,7 +49,7 @@
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>read_input.Rd</code></div>
</div>
@ -110,11 +110,11 @@
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<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
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reference/read_redcap_instrument.html
View file

@ -1,6 +1,6 @@
<!DOCTYPE html>
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@ -12,7 +12,7 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
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@ -111,11 +111,11 @@ Numeric vector.</p></dd>
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8
reference/read_redcap_tables.html
View file

@ -3,7 +3,7 @@
REDCapR::redcap_read and only downloading specified fields, forms and/or
events using the built-in focused_metadata including some clean-up.
Works with classical and longitudinal projects with or without repeating
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events using the built-in focused_metadata including some clean-up.
Works with classical and longitudinal projects with or without repeating
@ -18,7 +18,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
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@ -136,11 +136,11 @@ all.</p></dd>
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<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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8
reference/redcap_wider.html
View file

@ -1,6 +1,6 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Converts a list of REDCap data frames from long to wide format.
Handles longitudinal projects, but not yet repeated instruments."><title>Redcap Wider — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Redcap Wider — redcap_wider"><meta property="og:description" content="Converts a list of REDCap data frames from long to wide format.
Handles longitudinal projects, but not yet repeated instruments."><title>Redcap Wider — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Redcap Wider — redcap_wider"><meta property="og:description" content="Converts a list of REDCap data frames from long to wide format.
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@ -12,7 +12,7 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
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@ -174,11 +174,11 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
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8
reference/redcapcast_data.html
View file

@ -1,6 +1,6 @@
<!DOCTYPE html>
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@ -12,7 +12,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
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@ -148,11 +148,11 @@ Contains only synthetic data.</p>
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reference/redcapcast_meta.html
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@ -1,5 +1,5 @@
<!DOCTYPE html>
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@ -10,7 +10,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.4.1</small>
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p>
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reference/sanitize_split.html
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reference/strsplitx.html
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reference/ui_factory.html
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