mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2026-06-19 13:17:30 +02:00
Deploying to gh-pages from @ agdamsbo/REDCapCAST@db75c3313e 🚀
This commit is contained in:
agdamsbo
parent
bc2e23a272
commit
0b30252598
171 changed files with 7009 additions and 602 deletions
154
reference/index.md
Normal file
154
reference/index.md
Normal file
|
|
@ -0,0 +1,154 @@
|
|||
# Package index
|
||||
|
||||
## All functions
|
||||
|
||||
- [`REDCap_split()`](https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.md)
|
||||
: Split REDCap repeating instruments table into multiple tables
|
||||
- [`all_na()`](https://agdamsbo.github.io/REDCapCAST/reference/all_na.md)
|
||||
: Check if vector is all NA
|
||||
- [`apply_factor_labels()`](https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.md)
|
||||
: Preserve all factor levels from REDCap data dictionary in data
|
||||
export
|
||||
- [`apply_field_label()`](https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.md)
|
||||
: Apply REDCap filed labels to data frame
|
||||
- [`as_factor()`](https://agdamsbo.github.io/REDCapCAST/reference/as_factor.md)
|
||||
: Convert labelled vectors to factors while preserving attributes
|
||||
- [`as_logical()`](https://agdamsbo.github.io/REDCapCAST/reference/as_logical.md)
|
||||
: Interpret specific binary values as logicals
|
||||
- [`case_match_regex_list()`](https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.md)
|
||||
: List-base regex case_when
|
||||
- [`cast_data_overview()`](https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.md)
|
||||
: Overview of REDCapCAST data for shiny
|
||||
- [`cast_meta_overview()`](https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.md)
|
||||
: Overview of REDCapCAST meta data for shiny
|
||||
- [`char2choice()`](https://agdamsbo.github.io/REDCapCAST/reference/char2choice.md)
|
||||
: Simple function to generate REDCap choices from character vector
|
||||
- [`char2cond()`](https://agdamsbo.github.io/REDCapCAST/reference/char2cond.md)
|
||||
: Simple function to generate REDCap branching logic from character
|
||||
vector
|
||||
- [`clean_field_label()`](https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.md)
|
||||
: Very simple function to remove rich text formatting from field label
|
||||
and save the first paragraph ('\<p\>...\</p\>').
|
||||
- [`clean_redcap_name()`](https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.md)
|
||||
: clean_redcap_name
|
||||
- [`compact_vec()`](https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.md)
|
||||
: Compacting a vector of any length with or without names
|
||||
- [`create_html_table()`](https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.md)
|
||||
: Create two-column HTML table for data piping in REDCap instruments
|
||||
- [`create_instrument_meta()`](https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.md)
|
||||
: DEPRICATED Create zips file with necessary content based on data set
|
||||
- [`cut_string_length()`](https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.md)
|
||||
: Cut string to desired length
|
||||
- [`d2w()`](https://agdamsbo.github.io/REDCapCAST/reference/d2w.md) :
|
||||
Convert single digits to words
|
||||
- [`doc2dd()`](https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.md)
|
||||
: Doc table to data dictionary - EARLY, DOCS MISSING
|
||||
- [`ds2dd()`](https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.md)
|
||||
: (DEPRECATED) Data set to data dictionary function
|
||||
- [`ds2dd_detailed()`](https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.md)
|
||||
: Extract data from stata file for data dictionary
|
||||
- [`easy_redcap()`](https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.md)
|
||||
: Secure API key storage and data acquisition in one
|
||||
- [`export_redcap_instrument()`](https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.md)
|
||||
: Creates zip-file with necessary content to manually add instrument
|
||||
to database
|
||||
- [`fct2num()`](https://agdamsbo.github.io/REDCapCAST/reference/fct2num.md)
|
||||
: Allows conversion of factor to numeric values preserving original
|
||||
levels
|
||||
- [`fct_drop()`](https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.md)
|
||||
: Drop unused levels preserving label data
|
||||
- [`file_extension()`](https://agdamsbo.github.io/REDCapCAST/reference/file_extension.md)
|
||||
: DEPRECATED Helper to import files correctly
|
||||
- [`focused_metadata()`](https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.md)
|
||||
: focused_metadata
|
||||
- [`format_redcap_factor()`](https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.md)
|
||||
: Converts REDCap choices to factor levels and stores in labels
|
||||
attribute
|
||||
- [`format_subheader()`](https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.md)
|
||||
: Sub-header formatting wrapper
|
||||
- [`get_api_key()`](https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.md)
|
||||
: Retrieve project API key if stored, if not, set and retrieve
|
||||
- [`get_attr()`](https://agdamsbo.github.io/REDCapCAST/reference/get_attr.md)
|
||||
: Extract attribute. Returns NA if none
|
||||
- [`get_id_name()`](https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.md)
|
||||
: Get the id name
|
||||
- [`guess_time_only()`](https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.md)
|
||||
: Guess time variables based on naming pattern
|
||||
- [`guess_time_only_filter()`](https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.md)
|
||||
: Try at determining which are true time only variables
|
||||
- [`haven_all_levels()`](https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.md)
|
||||
: Finish incomplete haven attributes substituting missings with values
|
||||
- [`hms2character()`](https://agdamsbo.github.io/REDCapCAST/reference/hms2character.md)
|
||||
: Change "hms" to "character" for REDCap upload.
|
||||
- [`html_tag_wrap()`](https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.md)
|
||||
: Simple html tag wrapping for REDCap text formatting
|
||||
- [`is.labelled()`](https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.md)
|
||||
: Tests for multiple label classes
|
||||
- [`is_missing()`](https://agdamsbo.github.io/REDCapCAST/reference/is_missing.md)
|
||||
: Multi missing check
|
||||
- [`is_repeated_longitudinal()`](https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.md)
|
||||
: Test if repeatable or longitudinal
|
||||
- [`mark_complete()`](https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.md)
|
||||
: Completion marking based on completed upload
|
||||
- [`match_fields_to_form()`](https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.md)
|
||||
: Match fields to forms
|
||||
- [`mtcars_redcap`](https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.md)
|
||||
: mtcars dataset slightly modified to use for Shiny app upload
|
||||
demonstration
|
||||
- [`named_levels()`](https://agdamsbo.github.io/REDCapCAST/reference/named_levels.md)
|
||||
: Get named vector of factor levels and values
|
||||
- [`nav_bar_page()`](https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.md)
|
||||
: Nav_bar defining function for shiny ui
|
||||
- [`numchar2fct()`](https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.md)
|
||||
: Applying var2fct across data set
|
||||
- [`parse_data()`](https://agdamsbo.github.io/REDCapCAST/reference/parse_data.md)
|
||||
: Helper to auto-parse un-formatted data with haven and readr
|
||||
- [`possibly_numeric()`](https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.md)
|
||||
: Tests if vector can be interpreted as numeric without introducing
|
||||
NAs by coercion
|
||||
- [`possibly_roman()`](https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.md)
|
||||
: Test if vector can be interpreted as roman numerals
|
||||
- [`process_user_input()`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.md)
|
||||
: User input processing
|
||||
- [`process_user_input(`*`<character>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.md)
|
||||
: User input processing character
|
||||
- [`process_user_input(`*`<data.frame>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.md)
|
||||
: User input processing data.frame
|
||||
- [`process_user_input(`*`<default>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.md)
|
||||
: User input processing default
|
||||
- [`process_user_input(`*`<response>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.md)
|
||||
: User input processing response
|
||||
- [`read_input()`](https://agdamsbo.github.io/REDCapCAST/reference/read_input.md)
|
||||
: Flexible file import based on extension
|
||||
- [`read_redcap_instrument()`](https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.md)
|
||||
: Convenience function to download complete instrument, using token
|
||||
storage in keyring.
|
||||
- [`read_redcap_tables()`](https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.md)
|
||||
: Download REDCap data
|
||||
- [`redcap_wider()`](https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.md)
|
||||
: Transforms list of REDCap data.frames to a single wide data.frame
|
||||
- [`redcapcast_data`](https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.md)
|
||||
: Data set for demonstration
|
||||
- [`redcapcast_meta`](https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.md)
|
||||
: REDCap metadata from data base
|
||||
- [`replace_curly_quote()`](https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.md)
|
||||
: Replace curly apostrophes and quotes from word
|
||||
- [`sanitize_split()`](https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.md)
|
||||
: Sanitize list of data frames
|
||||
- [`set_attr()`](https://agdamsbo.github.io/REDCapCAST/reference/set_attr.md)
|
||||
: Set attributes for named attribute. Appends if attr is NULL
|
||||
- [`shiny_cast()`](https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.md)
|
||||
: Launch the included Shiny-app for database casting and upload
|
||||
- [`split_non_repeating_forms()`](https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.md)
|
||||
: Split a data frame into separate tables for each form
|
||||
- [`strsplitx()`](https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.md)
|
||||
: Extended string splitting
|
||||
- [`suffix2label()`](https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.md)
|
||||
: Transfer variable name suffix to label in widened data
|
||||
- [`time_only_correction()`](https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.md)
|
||||
: Correction based on time_only_filter function
|
||||
- [`var2fct()`](https://agdamsbo.github.io/REDCapCAST/reference/var2fct.md)
|
||||
: Convert vector to factor based on threshold of number of unique
|
||||
levels
|
||||
- [`vec2choice()`](https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.md)
|
||||
: Named vector to REDCap choices (\`wrapping compact_vec()\`)
|
||||
Loading…
Add table
Add a link
Reference in a new issue