Deploying to gh-pages from @ agdamsbo/REDCapCAST@db75c3313e 🚀

This commit is contained in:
agdamsbo 2025-11-14 14:10:52 +00:00
commit 0b30252598
171 changed files with 7009 additions and 602 deletions

View file

@ -1,17 +1,16 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
<!-- Generated by pkgdown: do not edit by hand --><html lang="en-US">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<title>Shiny-app • REDCapCAST</title>
<!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png">
<link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png">
<link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png">
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png">
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png">
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png">
<!-- favicons --><link rel="icon" type="image/png" sizes="96x96" href="../favicon-96x96.png">
<link rel="icon" type="”image/svg+xml”" href="../favicon.svg">
<link rel="apple-touch-icon" sizes="180x180" href="../apple-touch-icon.png">
<link rel="icon" sizes="any" href="../favicon.ico">
<link rel="manifest" href="../site.webmanifest">
<script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
<script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
@ -26,7 +25,7 @@
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.11.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@ -67,7 +66,7 @@
<h1>Shiny-app</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v25.3.2/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
<div class="d-none name"><code>Shiny-app.Rmd</code></div>
</div>
@ -151,55 +150,55 @@ and launch the app as follows:</p>
<span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span> <span class="op">|&gt;</span> </span>
<span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span>
<span><span class="co">#&gt; tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
<span><span class="co">#&gt; $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
<span><span class="co">#&gt; $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
<span><span class="co">#&gt; $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
<span><span class="co">#&gt; $ inclusion_time : chr [1:6] "12:38:49" "10:38:57" "12:01:07" "20:39:19" ...</span></span>
<span><span class="co">#&gt; $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
<span><span class="co">#&gt; $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
<span><span class="co">#&gt; $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
<span><span class="co">#&gt; $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
<span><span class="co">#&gt; $ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
<span><span class="co">#&gt; $ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ region : chr [1:6] "East" "South" "North" NA ...</span></span>
<span><span class="co">#&gt; $ baseline_data_start_complete : chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed____inclusion : chr [1:6] "Yes" "Yes" NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed____follow1 : chr [1:6] NA "Yes" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed____follow2 : chr [1:6] NA NA "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_date____inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
<span><span class="co">#&gt; $ mrs_date____follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
<span><span class="co">#&gt; $ mrs_date____follow2 : Date[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_score____inclusion : num [1:6] 1 1 NA NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_score____follow1 : num [1:6] NA 3 2 NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_score____follow2 : num [1:6] NA NA 1 NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_complete____inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_complete____follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_complete____follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime____1____follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
<span><span class="co">#&gt; $ event_datetime____1____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_age____1____follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
<span><span class="co">#&gt; $ event_age____1____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
<span><span class="co">#&gt; $ event_type____1____follow1 : chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
<span><span class="co">#&gt; $ event_type____1____follow2 : chr [1:6] NA NA "ICH" "AIS" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete____1____follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete____1____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ event_datetime____2____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime____2____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime____3____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime____3____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_age____2____follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
<span><span class="co">#&gt; $ event_age____2____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
<span><span class="co">#&gt; $ event_age____3____follow1 : num [1:6] NA NA NA NA NA NA</span></span>
<span><span class="co">#&gt; $ event_age____3____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
<span><span class="co">#&gt; $ event_type____2____follow1 : chr [1:6] NA NA "ICH" "TIA" ...</span></span>
<span><span class="co">#&gt; $ event_type____2____follow2 : chr [1:6] NA NA "TIA" "ICH" ...</span></span>
<span><span class="co">#&gt; $ event_type____3____follow1 : chr [1:6] NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ event_type____3____follow2 : chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete____2____follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete____2____follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete____3____follow1: chr [1:6] NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ new_event_complete____3____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
<span><span class="co">#&gt; $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
<span><span class="co">#&gt; $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
<span><span class="co">#&gt; $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
<span><span class="co">#&gt; $ inclusion_time : chr [1:6] "12:38:49" "10:38:57" "12:01:07" "20:39:19" ...</span></span>
<span><span class="co">#&gt; $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
<span><span class="co">#&gt; $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
<span><span class="co">#&gt; $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
<span><span class="co">#&gt; $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
<span><span class="co">#&gt; $ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
<span><span class="co">#&gt; $ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ region : chr [1:6] "East" "South" "North" NA ...</span></span>
<span><span class="co">#&gt; $ baseline_data_start_complete : chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed__inclusion : chr [1:6] "Yes" "Yes" NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed__follow1 : chr [1:6] NA "Yes" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed__follow2 : chr [1:6] NA NA "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_date__inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
<span><span class="co">#&gt; $ mrs_date__follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
<span><span class="co">#&gt; $ mrs_date__follow2 : Date[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_score__inclusion : num [1:6] 1 1 NA NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_score__follow1 : num [1:6] NA 3 2 NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_score__follow2 : num [1:6] NA NA 1 NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_complete__inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_complete__follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_complete__follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime__1__follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
<span><span class="co">#&gt; $ event_datetime__1__follow2 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_age__1__follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
<span><span class="co">#&gt; $ event_age__1__follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
<span><span class="co">#&gt; $ event_type__1__follow1 : chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
<span><span class="co">#&gt; $ event_type__1__follow2 : chr [1:6] NA NA "ICH" "AIS" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete__1__follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete__1__follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ event_datetime__2__follow1 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime__2__follow2 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime__3__follow1 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_datetime__3__follow2 : POSIXct[1:6], format: NA NA ...</span></span>
<span><span class="co">#&gt; $ event_age__2__follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
<span><span class="co">#&gt; $ event_age__2__follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
<span><span class="co">#&gt; $ event_age__3__follow1 : num [1:6] NA NA NA NA NA NA</span></span>
<span><span class="co">#&gt; $ event_age__3__follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
<span><span class="co">#&gt; $ event_type__2__follow1 : chr [1:6] NA NA "ICH" "TIA" ...</span></span>
<span><span class="co">#&gt; $ event_type__2__follow2 : chr [1:6] NA NA "TIA" "ICH" ...</span></span>
<span><span class="co">#&gt; $ event_type__3__follow1 : chr [1:6] NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ event_type__3__follow2 : chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete__2__follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete__2__follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete__3__follow1: chr [1:6] NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ new_event_complete__3__follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">ds</span><span class="op">|&gt;</span> </span>
<span> <span class="fu"><a href="../reference/ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="../reference/redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span><span class="op">)</span><span class="op">|&gt;</span> </span>
@ -379,7 +378,7 @@ based on a set threshold for unique values:</p>
</div>
<div class="pkgdown-footer-right">
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.2.0.</p>
</div>
</footer>