REDCapCAST/reference/index.md

# Package index

## All functions

- [`REDCap_split()`](https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.md)
  : Split REDCap repeating instruments table into multiple tables
- [`all_na()`](https://agdamsbo.github.io/REDCapCAST/reference/all_na.md)
  : Check if vector is all NA
- [`apply_factor_labels()`](https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.md)
  : Preserve all factor levels from REDCap data dictionary in data
  export
- [`apply_field_label()`](https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.md)
  : Apply REDCap filed labels to data frame
- [`as_factor()`](https://agdamsbo.github.io/REDCapCAST/reference/as_factor.md)
  : Convert labelled vectors to factors while preserving attributes
- [`as_logical()`](https://agdamsbo.github.io/REDCapCAST/reference/as_logical.md)
  : Interpret specific binary values as logicals
- [`case_match_regex_list()`](https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.md)
  : List-base regex case_when
- [`cast_data_overview()`](https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.md)
  : Overview of REDCapCAST data for shiny
- [`cast_meta_overview()`](https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.md)
  : Overview of REDCapCAST meta data for shiny
- [`char2choice()`](https://agdamsbo.github.io/REDCapCAST/reference/char2choice.md)
  : Simple function to generate REDCap choices from character vector
- [`char2cond()`](https://agdamsbo.github.io/REDCapCAST/reference/char2cond.md)
  : Simple function to generate REDCap branching logic from character
  vector
- [`clean_field_label()`](https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.md)
  : Very simple function to remove rich text formatting from field label
  and save the first paragraph ('\<p\>...\</p\>').
- [`clean_redcap_name()`](https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.md)
  : clean_redcap_name
- [`compact_vec()`](https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.md)
  : Compacting a vector of any length with or without names
- [`create_html_table()`](https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.md)
  : Create two-column HTML table for data piping in REDCap instruments
- [`create_instrument_meta()`](https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.md)
  : DEPRECATED Create zips file with necessary content based on data set
- [`cut_string_length()`](https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.md)
  : Cut string to desired length
- [`d2w()`](https://agdamsbo.github.io/REDCapCAST/reference/d2w.md) :
  Convert single digits to words
- [`doc2dd()`](https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.md)
  : Doc table to data dictionary - EARLY, DOCS MISSING
- [`ds2dd()`](https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.md)
  : (DEPRECATED) Data set to data dictionary function
- [`ds2dd_detailed()`](https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.md)
  : Extract data from stata file for data dictionary
- [`easy_redcap()`](https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.md)
  : Secure API key storage and data acquisition in one
- [`export_redcap_instrument()`](https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.md)
  : Creates zip-file with necessary content to manually add instrument
  to database
- [`fct2num()`](https://agdamsbo.github.io/REDCapCAST/reference/fct2num.md)
  : Allows conversion of factor to numeric values preserving original
  levels
- [`fct_drop()`](https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.md)
  : Drop unused levels preserving label data
- [`file_extension()`](https://agdamsbo.github.io/REDCapCAST/reference/file_extension.md)
  : DEPRECATED Helper to import files correctly
- [`focused_metadata()`](https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.md)
  : focused_metadata
- [`format_redcap_factor()`](https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.md)
  : Converts REDCap choices to factor levels and stores in labels
  attribute
- [`format_subheader()`](https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.md)
  : Sub-header formatting wrapper
- [`get_api_key()`](https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.md)
  : Retrieve project API key if stored, if not, set and retrieve
- [`get_attr()`](https://agdamsbo.github.io/REDCapCAST/reference/get_attr.md)
  : Extract attribute. Returns NA if none
- [`get_id_name()`](https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.md)
  : Get the id name
- [`guess_time_only()`](https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.md)
  : Guess time variables based on naming pattern
- [`guess_time_only_filter()`](https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.md)
  : Try at determining which are true time only variables
- [`haven_all_levels()`](https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.md)
  : Finish incomplete haven attributes substituting missings with values
- [`hms2character()`](https://agdamsbo.github.io/REDCapCAST/reference/hms2character.md)
  : Change "hms" to "character" for REDCap upload.
- [`html_tag_wrap()`](https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.md)
  : Simple html tag wrapping for REDCap text formatting
- [`is.labelled()`](https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.md)
  : Tests for multiple label classes
- [`is_missing()`](https://agdamsbo.github.io/REDCapCAST/reference/is_missing.md)
  : Multi missing check
- [`is_repeated_longitudinal()`](https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.md)
  : Test if repeatable or longitudinal
- [`mark_complete()`](https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.md)
  : Completion marking based on completed upload
- [`match_fields_to_form()`](https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.md)
  : Match fields to forms
- [`mtcars_redcap`](https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.md)
  : mtcars dataset slightly modified to use for Shiny app upload
  demonstration
- [`named_levels()`](https://agdamsbo.github.io/REDCapCAST/reference/named_levels.md)
  : Get named vector of factor levels and values
- [`nav_bar_page()`](https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.md)
  : Nav_bar defining function for shiny ui
- [`numchar2fct()`](https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.md)
  : Applying var2fct across data set
- [`parse_data()`](https://agdamsbo.github.io/REDCapCAST/reference/parse_data.md)
  : Helper to auto-parse un-formatted data with haven and readr
- [`possibly_numeric()`](https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.md)
  : Tests if vector can be interpreted as numeric without introducing
  NAs by coercion
- [`possibly_roman()`](https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.md)
  : Test if vector can be interpreted as roman numerals
- [`process_user_input()`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.md)
  : User input processing
- [`process_user_input(`*`<character>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.md)
  : User input processing character
- [`process_user_input(`*`<data.frame>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.md)
  : User input processing data.frame
- [`process_user_input(`*`<default>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.md)
  : User input processing default
- [`process_user_input(`*`<response>`*`)`](https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.md)
  : User input processing response
- [`read_input()`](https://agdamsbo.github.io/REDCapCAST/reference/read_input.md)
  : Flexible file import based on extension
- [`read_redcap_instrument()`](https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.md)
  : Convenience function to download complete instrument, using token
  storage in keyring.
- [`read_redcap_tables()`](https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.md)
  : Download REDCap data
- [`redcap_wider()`](https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.md)
  : Transforms list of REDCap data.frames to a single wide data.frame
- [`redcapcast_data`](https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.md)
  : Data set for demonstration
- [`redcapcast_meta`](https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.md)
  : REDCap metadata from data base
- [`replace_curly_quote()`](https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.md)
  : Replace curly apostrophes and quotes from word
- [`sanitize_split()`](https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.md)
  : Sanitize list of data frames
- [`set_attr()`](https://agdamsbo.github.io/REDCapCAST/reference/set_attr.md)
  : Set attributes for named attribute. Appends if attr is NULL
- [`shiny_cast()`](https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.md)
  : Launch the included Shiny-app for database casting and upload
- [`split_non_repeating_forms()`](https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.md)
  : Split a data frame into separate tables for each form
- [`strsplitx()`](https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.md)
  : Extended string splitting
- [`suffix2label()`](https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.md)
  : Transfer variable name suffix to label in widened data
- [`time_only_correction()`](https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.md)
  : Correction based on time_only_filter function
- [`var2fct()`](https://agdamsbo.github.io/REDCapCAST/reference/var2fct.md)
  : Convert vector to factor based on threshold of number of unique
  levels
- [`vec2choice()`](https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.md)
  : Named vector to REDCap choices (\`wrapping compact_vec()\`)