transfer from old repo
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apps/shinyDAG-1.0.0/dev/Dockerfile
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apps/shinyDAG-1.0.0/dev/Dockerfile
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# shiny-verse:3.6.0
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FROM rocker/verse:3.5.3
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RUN apt-get update -qq && apt-get -y --no-install-recommends install \
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libxml2-dev \
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libcairo2-dev \
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libsqlite3-dev \
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libmariadbd-dev \
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libmariadb-client-lgpl-dev \
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libpq-dev \
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libssl-dev \
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libcurl4-openssl-dev \
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libssh2-1-dev \
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unixodbc-dev \
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&& install2.r --error \
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--deps TRUE \
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tidyverse \
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dplyr \
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devtools \
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formatR \
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remotes \
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selectr \
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caTools \
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BiocManager
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LABEL maintainer="Travis Gerke (Travis.Gerke@moffitt.org)"
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# Install system dependencies for required packages
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RUN apt-get update -qq && apt-get -y --no-install-recommends install \
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libssl-dev \
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libxml2-dev \
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libmagick++-dev \
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libv8-3.14-dev \
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libglu1-mesa-dev \
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freeglut3-dev \
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mesa-common-dev \
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libudunits2-dev \
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libpoppler-cpp-dev \
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libwebp-dev \
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&& apt-get clean \
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&& rm -rf /var/lib/apt/lists/ \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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RUN install2.r --error --deps TRUE \
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shinyAce \
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shinydashboard \
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shinyWidgets \
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DiagrammeR \
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ggdag \
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igraph \
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pdftools \
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shinyBS \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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RUN Rscript -e "devtools::install_github('metrumresearchgroup/texPreview', ref = 'e954322')" \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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# Install TinyTeX
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RUN install2.r --error tinytex \
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&& export CTAN_REPO="http://mirror.las.iastate.edu/tex-archive/systems/texlive/tlnet" \
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&& wget -qO- \
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"https://github.com/yihui/tinytex/raw/master/tools/install-unx.sh" | \
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sh -s - --admin --no-path \
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&& mv ~/.TinyTeX /opt/TinyTeX \
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&& /opt/TinyTeX/bin/*/tlmgr path add \
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&& tlmgr update --self \
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&& tlmgr install metafont mfware inconsolata tex ae parskip listings \
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&& tlmgr install standalone varwidth xcolor colortbl multirow psnfss setspace pgf \
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&& tlmgr path add \
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&& Rscript -e "tinytex::r_texmf()" \
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&& chown -R root:staff /opt/TinyTeX \
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&& chmod -R a+w /opt/TinyTeX \
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&& chmod -R a+wx /opt/TinyTeX/bin \
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&& echo "PATH=${PATH}" >> /usr/local/lib/R/etc/Renviron \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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RUN install2.r --error --deps TRUE shinyjs \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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RUN install2.r --error plotly \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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RUN install2.r --error shinycssloaders \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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ARG TRIGGER_UPDATE=unknown
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RUN installGithub.r gadenbuie/grkstyle r-lib/styler
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RUN installGithub.r gadenbuie/shinyThings@undo \
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&& rm -rf /tmp/downloaded_packages/ /tmp/*.rds
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#ARG SHINY_APP_IDLE_TIMEOUT=600
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#RUN sed -i "s/directory_index on;/app_idle_timeout ${SHINY_APP_IDLE_TIMEOUT};/g" /etc/shiny-server/shiny-server.conf
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#COPY . /srv/shiny-server/shinyDAG
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#RUN chown -R shiny:shiny /srv/shiny-server/
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36
apps/shinyDAG-1.0.0/dev/README.md
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apps/shinyDAG-1.0.0/dev/README.md
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## Building and developing shinyDAG
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### shinyDAG dev environment
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I use the Dockerfile in this folder to create a fully-featured RStudio docker container that is *pretty close* to the final shinyDAG environment.
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Note that it's not perfect and if you install packages into this container, you'll need to also update the main shinyDAG docker file [here](../Dockerfile).
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To create the dev environment:
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```bash
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# make sure you're in the ./dev folder
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cd dev
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# make the dev image
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docker build -t shinydag-dev .
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# move back to shinyDAG proper and start up the dev image
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cd ..
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docker run --rm -p 8787:8787 -v $(pwd):/home/rstudio/shinydag -e PASSWORD="password" shinydag-dev
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```
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(Note that you should probably change the password above, but if you're only running locally it's not a big deal.)
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Then navigate to <localhost:8787> and login using the password you entered.
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### Create shinyDAG image
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```bash
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docker build -t gerkelab/shinydag:dev .
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# To send up to docker hub
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docker push
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```
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The `:dev` indicates that this image is tagged `dev`, but this can be anything you want.
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If you don't add a tag, it's assumed to be `:latest` which is kind of like git's `master` but for docker containers.
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