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<title>Article A: Final renders</title>
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<h1 class="title">Article A: Final renders</h1>
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<div class="cell">
<div class="sourceCode cell-code" id="cb1"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="co"># ds &lt;- readr::read_csv(here::here("/Volumes/Data/REDCap/DDV/talos_ddv.csv"))</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<div class="cell">
<div class="sourceCode cell-code" id="cb2"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># ds |&gt; finalfit::missing_plot()</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
</div>
<p>On hanlding missings: https://finalfit.org/articles/missing.html</p>
<div class="cell">
<div class="sourceCode cell-code" id="cb3"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="fu">source</span>(here<span class="sc">::</span><span class="fu">here</span>(<span class="st">"1 PA Decline/dst import.R"</span>))</span>
<span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a>ls_tbl <span class="ot">&lt;-</span> <span class="fu">docx2ds</span>(</span>
<span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a> <span class="at">path =</span> <span class="st">"/Users/au301842/Library/CloudStorage/OneDrive-Personal/Research/PhD/1 Change in PA/Manuscript/Manuscript_Change in PA_v2_0.docx"</span></span>
<span id="cb3-4"><a href="#cb3-4" aria-hidden="true" tabindex="-1"></a>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>Content types in the current document are as follows:</code></pre>
</div>
<div class="cell-output cell-output-stdout">
<pre><code>[1] "paragraph" "table cell"</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: The `value` argument of `names&lt;-()` must have the same length as `x` as of
tibble 3.0.0.</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>Warning: The `value` argument of `names&lt;-()` can't be empty as of tibble 3.0.0.</code></pre>
</div>
<div class="sourceCode cell-code" id="cb8"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a>ls <span class="ot">&lt;-</span> ls_tbl <span class="sc">|&gt;</span> purrr<span class="sc">::</span><span class="fu">pluck</span>(<span class="dv">2</span>) <span class="sc">|&gt;</span> </span>
<span id="cb8-2"><a href="#cb8-2" aria-hidden="true" tabindex="-1"></a> (\(.x){</span>
<span id="cb8-3"><a href="#cb8-3" aria-hidden="true" tabindex="-1"></a> .x[<span class="sc">-</span><span class="fu">c</span>(<span class="dv">1</span><span class="sc">:</span><span class="dv">3</span>,<span class="fu">nrow</span>(.x)),]</span>
<span id="cb8-4"><a href="#cb8-4" aria-hidden="true" tabindex="-1"></a> })()</span>
<span id="cb8-5"><a href="#cb8-5" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb8-6"><a href="#cb8-6" aria-hidden="true" tabindex="-1"></a>n <span class="ot">&lt;-</span> <span class="dv">0</span></span>
<span id="cb8-7"><a href="#cb8-7" aria-hidden="true" tabindex="-1"></a><span class="cf">for</span> (i <span class="cf">in</span> <span class="fu">seq_len</span>(<span class="fu">nrow</span>(ls))){</span>
<span id="cb8-8"><a href="#cb8-8" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> (ls[[<span class="dv">2</span>]][i]<span class="sc">!=</span><span class="st">""</span>){</span>
<span id="cb8-9"><a href="#cb8-9" aria-hidden="true" tabindex="-1"></a> n[i]<span class="ot">&lt;-</span>n[<span class="fu">length</span>(n)]<span class="sc">+</span><span class="dv">1</span></span>
<span id="cb8-10"><a href="#cb8-10" aria-hidden="true" tabindex="-1"></a> } <span class="cf">else</span> {</span>
<span id="cb8-11"><a href="#cb8-11" aria-hidden="true" tabindex="-1"></a> n[i] <span class="ot">&lt;-</span> n[<span class="fu">length</span>(n)]</span>
<span id="cb8-12"><a href="#cb8-12" aria-hidden="true" tabindex="-1"></a> }</span>
<span id="cb8-13"><a href="#cb8-13" aria-hidden="true" tabindex="-1"></a>}</span>
<span id="cb8-14"><a href="#cb8-14" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb8-15"><a href="#cb8-15" aria-hidden="true" tabindex="-1"></a><span class="fu">split</span>(ls,n) <span class="sc">|&gt;</span> <span class="fu">lapply</span>(<span class="cf">function</span>(.x){</span>
<span id="cb8-16"><a href="#cb8-16" aria-hidden="true" tabindex="-1"></a> </span>
<span id="cb8-17"><a href="#cb8-17" aria-hidden="true" tabindex="-1"></a> <span class="cf">if</span> (<span class="st">" TRUE"</span> <span class="sc">%in%</span> .x[[<span class="dv">1</span>]]){</span>
<span id="cb8-18"><a href="#cb8-18" aria-hidden="true" tabindex="-1"></a> <span class="fu">cbind</span>(.x[<span class="dv">1</span>,<span class="dv">1</span><span class="sc">:</span><span class="dv">2</span>],.x[<span class="dv">3</span>,<span class="dv">3</span><span class="sc">:</span><span class="dv">5</span>],.x[<span class="dv">1</span>,<span class="dv">6</span>],.x[<span class="dv">3</span>,<span class="dv">7</span><span class="sc">:</span><span class="dv">9</span>])</span>
<span id="cb8-19"><a href="#cb8-19" aria-hidden="true" tabindex="-1"></a> } <span class="cf">else</span> {</span>
<span id="cb8-20"><a href="#cb8-20" aria-hidden="true" tabindex="-1"></a> .x</span>
<span id="cb8-21"><a href="#cb8-21" aria-hidden="true" tabindex="-1"></a> }</span>
<span id="cb8-22"><a href="#cb8-22" aria-hidden="true" tabindex="-1"></a>}) <span class="sc">|&gt;</span> dplyr<span class="sc">::</span><span class="fu">bind_rows</span>() <span class="sc">|&gt;</span> </span>
<span id="cb8-23"><a href="#cb8-23" aria-hidden="true" tabindex="-1"></a> gt<span class="sc">::</span><span class="fu">gt</span>()</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-stderr">
<pre><code>New names:
• `` -&gt; `...1`
• `` -&gt; `...2`
• `` -&gt; `...3`
• `` -&gt; `...4`
• `` -&gt; `...5`
• `` -&gt; `...6`
• `` -&gt; `...7`
• `` -&gt; `...8`
• `` -&gt; `...9`</code></pre>
</div>
<div class="cell-output cell-output-stderr">
<pre><code>New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
New names:
• `` -&gt; `...1`
• `` -&gt; `...2`
• `` -&gt; `...3`
• `` -&gt; `...4`
• `` -&gt; `...5`
• `` -&gt; `...6`
• `` -&gt; `...7`
• `` -&gt; `...8`
• `` -&gt; `...9`</code></pre>
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<table class="gt_table table table-sm table-striped small" data-quarto-postprocess="true" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead>
<tr class="header gt_col_headings">
<th id="...1" class="gt_col_heading gt_columns_bottom_border gt_left" data-quarto-table-cell-role="th" scope="col">...1</th>
<th id="...2" class="gt_col_heading gt_columns_bottom_border gt_right" data-quarto-table-cell-role="th" scope="col">...2</th>
<th id="...3" class="gt_col_heading gt_columns_bottom_border gt_right" data-quarto-table-cell-role="th" scope="col">...3</th>
<th id="...4" class="gt_col_heading gt_columns_bottom_border gt_left" data-quarto-table-cell-role="th" scope="col">...4</th>
<th id="...5" class="gt_col_heading gt_columns_bottom_border gt_left" data-quarto-table-cell-role="th" scope="col">...5</th>
<th id="...6" class="gt_col_heading gt_columns_bottom_border gt_right" data-quarto-table-cell-role="th" scope="col">...6</th>
<th id="...7" class="gt_col_heading gt_columns_bottom_border gt_right" data-quarto-table-cell-role="th" scope="col">...7</th>
<th id="...8" class="gt_col_heading gt_columns_bottom_border gt_left" data-quarto-table-cell-role="th" scope="col">...8</th>
<th id="...9" class="gt_col_heading gt_columns_bottom_border gt_left" data-quarto-table-cell-role="th" scope="col">...9</th>
</tr>
</thead>
<tbody class="gt_table_body">
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Age</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3">-2.4</td>
<td class="gt_row gt_left" headers="...4">-3.0, -1.9</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-0.90</td>
<td class="gt_row gt_left" headers="...8">-1.7, -0.12</td>
<td class="gt_row gt_left" headers="...9">0.025</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Female sex</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3">-38</td>
<td class="gt_row gt_left" headers="...4">-53, -22</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-3.5</td>
<td class="gt_row gt_left" headers="...8">-19, 12</td>
<td class="gt_row gt_left" headers="...9">0.7</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Body mass index</td>
<td class="gt_row gt_right" headers="...2">358</td>
<td class="gt_row gt_right" headers="...3">1.8</td>
<td class="gt_row gt_left" headers="...4">0.14, 3.5</td>
<td class="gt_row gt_left" headers="...5">0.034</td>
<td class="gt_row gt_right" headers="...6">-</td>
<td class="gt_row gt_right" headers="...7">-</td>
<td class="gt_row gt_left" headers="...8">-</td>
<td class="gt_row gt_left" headers="...9">-</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Current smoker</td>
<td class="gt_row gt_right" headers="...2">507</td>
<td class="gt_row gt_right" headers="...3">-18</td>
<td class="gt_row gt_left" headers="...4">-34, -1.9</td>
<td class="gt_row gt_left" headers="...5">0.029</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-5.8</td>
<td class="gt_row gt_left" headers="...8">-21, 9.5</td>
<td class="gt_row gt_left" headers="...9">0.5</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Living with somebody</td>
<td class="gt_row gt_right" headers="...2">517</td>
<td class="gt_row gt_right" headers="...3">46</td>
<td class="gt_row gt_left" headers="...4">30, 61</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">10</td>
<td class="gt_row gt_left" headers="...8">-5.6, 26</td>
<td class="gt_row gt_left" headers="...9">0.2</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Alchohol consumption</td>
<td class="gt_row gt_right" headers="...2">510</td>
<td class="gt_row gt_right" headers="...3">5.6</td>
<td class="gt_row gt_left" headers="...4">-21, 32</td>
<td class="gt_row gt_left" headers="...5">0.7</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">4.8</td>
<td class="gt_row gt_left" headers="...8">-19, 28</td>
<td class="gt_row gt_left" headers="...9">0.7</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Hypertension</td>
<td class="gt_row gt_right" headers="...2">519</td>
<td class="gt_row gt_right" headers="...3">-32</td>
<td class="gt_row gt_left" headers="...4">-47, -17</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-3.0</td>
<td class="gt_row gt_left" headers="...8">-17, 11</td>
<td class="gt_row gt_left" headers="...9">0.7</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Diabetes</td>
<td class="gt_row gt_right" headers="...2">517</td>
<td class="gt_row gt_right" headers="...3">-19</td>
<td class="gt_row gt_left" headers="...4">-43, 5.0</td>
<td class="gt_row gt_left" headers="...5">0.12</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-16</td>
<td class="gt_row gt_left" headers="...8">-38, 6.4</td>
<td class="gt_row gt_left" headers="...9">0.2</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Atrial fibrilation</td>
<td class="gt_row gt_right" headers="...2">518</td>
<td class="gt_row gt_right" headers="...3">1.3</td>
<td class="gt_row gt_left" headers="...4">-19, 22</td>
<td class="gt_row gt_left" headers="...5">&gt;0.9</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">21</td>
<td class="gt_row gt_left" headers="...8">2.0, 40</td>
<td class="gt_row gt_left" headers="...9">0.030</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Periferal arterial disease</td>
<td class="gt_row gt_right" headers="...2">511</td>
<td class="gt_row gt_right" headers="...3">-38</td>
<td class="gt_row gt_left" headers="...4">-76, 0.70</td>
<td class="gt_row gt_left" headers="...5">0.054</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-9.0</td>
<td class="gt_row gt_left" headers="...8">-45, 27</td>
<td class="gt_row gt_left" headers="...9">0.6</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Previous TIA</td>
<td class="gt_row gt_right" headers="...2">517</td>
<td class="gt_row gt_right" headers="...3">-2.8</td>
<td class="gt_row gt_left" headers="...4">-51, 46</td>
<td class="gt_row gt_left" headers="...5">&gt;0.9</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">9.7</td>
<td class="gt_row gt_left" headers="...8">-32, 51</td>
<td class="gt_row gt_left" headers="...9">0.6</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Previous MI</td>
<td class="gt_row gt_right" headers="...2">517</td>
<td class="gt_row gt_right" headers="...3">2.8</td>
<td class="gt_row gt_left" headers="...4">-25, 31</td>
<td class="gt_row gt_left" headers="...5">0.8</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">3.8</td>
<td class="gt_row gt_left" headers="...8">-23, 31</td>
<td class="gt_row gt_left" headers="...9">0.8</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Treated with IVT</td>
<td class="gt_row gt_right" headers="...2">509</td>
<td class="gt_row gt_right" headers="...3">14</td>
<td class="gt_row gt_left" headers="...4">-2.3, 29</td>
<td class="gt_row gt_left" headers="...5">0.094</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">5.9</td>
<td class="gt_row gt_left" headers="...8">-9.2, 21</td>
<td class="gt_row gt_left" headers="...9">0.4</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Treated with EVT</td>
<td class="gt_row gt_right" headers="...2">510</td>
<td class="gt_row gt_right" headers="...3">-9.5</td>
<td class="gt_row gt_left" headers="...4">-39, 20</td>
<td class="gt_row gt_left" headers="...5">0.5</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-3.6</td>
<td class="gt_row gt_left" headers="...8">-35, 28</td>
<td class="gt_row gt_left" headers="...9">0.8</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Study group allocation</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3"></td>
<td class="gt_row gt_left" headers="...4"></td>
<td class="gt_row gt_left" headers="...5"></td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7"></td>
<td class="gt_row gt_left" headers="...8"></td>
<td class="gt_row gt_left" headers="...9"></td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Aktiv (Citalopram)</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">0.00</td>
<td class="gt_row gt_left" headers="...4">Reference</td>
<td class="gt_row gt_left" headers="...5"></td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">0.00</td>
<td class="gt_row gt_left" headers="...8">Reference</td>
<td class="gt_row gt_left" headers="...9"></td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Placebo</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">7.2</td>
<td class="gt_row gt_left" headers="...4">-8.0, 22</td>
<td class="gt_row gt_left" headers="...5">0.4</td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">2.7</td>
<td class="gt_row gt_left" headers="...8">-11, 16</td>
<td class="gt_row gt_left" headers="...9">0.7</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Pre-stroke PASE score</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3">0.51</td>
<td class="gt_row gt_left" headers="...4">0.44, 0.59</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">0.33</td>
<td class="gt_row gt_left" headers="...8">0.23, 0.43</td>
<td class="gt_row gt_left" headers="...9">&lt;0.001</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Acute NIHSS</td>
<td class="gt_row gt_right" headers="...2">513</td>
<td class="gt_row gt_right" headers="...3">-3.7</td>
<td class="gt_row gt_left" headers="...4">-5.4, -2.0</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-2.3</td>
<td class="gt_row gt_left" headers="...8">-4.2, -0.35</td>
<td class="gt_row gt_left" headers="...9">0.021</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Employed</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3">70</td>
<td class="gt_row gt_left" headers="...4">56, 84</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">13</td>
<td class="gt_row gt_left" headers="...8">-5.4, 31</td>
<td class="gt_row gt_left" headers="...9">0.2</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Family income group</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3"></td>
<td class="gt_row gt_left" headers="...4"></td>
<td class="gt_row gt_left" headers="...5"></td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7"></td>
<td class="gt_row gt_left" headers="...8"></td>
<td class="gt_row gt_left" headers="...9"></td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">low</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">0.00</td>
<td class="gt_row gt_left" headers="...4">Reference</td>
<td class="gt_row gt_left" headers="...5"></td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">0.00</td>
<td class="gt_row gt_left" headers="...8">Reference</td>
<td class="gt_row gt_left" headers="...9"></td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">medium</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">39</td>
<td class="gt_row gt_left" headers="...4">22, 57</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">15</td>
<td class="gt_row gt_left" headers="...8">-2.7, 32</td>
<td class="gt_row gt_left" headers="...9">0.10</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">high</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">79</td>
<td class="gt_row gt_left" headers="...4">62, 97</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">30</td>
<td class="gt_row gt_left" headers="...8">9.8, 50</td>
<td class="gt_row gt_left" headers="...9">0.004</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Educational level group</td>
<td class="gt_row gt_right" headers="...2">474</td>
<td class="gt_row gt_right" headers="...3"></td>
<td class="gt_row gt_left" headers="...4"></td>
<td class="gt_row gt_left" headers="...5"></td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7"></td>
<td class="gt_row gt_left" headers="...8"></td>
<td class="gt_row gt_left" headers="...9"></td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">low</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">0.00</td>
<td class="gt_row gt_left" headers="...4">Reference</td>
<td class="gt_row gt_left" headers="...5"></td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">0.00</td>
<td class="gt_row gt_left" headers="...8">Reference</td>
<td class="gt_row gt_left" headers="...9"></td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">medium</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">28</td>
<td class="gt_row gt_left" headers="...4">11, 46</td>
<td class="gt_row gt_left" headers="...5">0.001</td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">1.6</td>
<td class="gt_row gt_left" headers="...8">-14, 17</td>
<td class="gt_row gt_left" headers="...9">0.8</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">high</td>
<td class="gt_row gt_right" headers="...2"></td>
<td class="gt_row gt_right" headers="...3">46</td>
<td class="gt_row gt_left" headers="...4">24, 67</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6"></td>
<td class="gt_row gt_right" headers="...7">6.9</td>
<td class="gt_row gt_left" headers="...8">-14, 27</td>
<td class="gt_row gt_left" headers="...9">0.5</td>
</tr>
<tr class="odd">
<td class="gt_row gt_left" headers="...1">Pre-stroke WHO-5 score</td>
<td class="gt_row gt_right" headers="...2">521</td>
<td class="gt_row gt_right" headers="...3">0.87</td>
<td class="gt_row gt_left" headers="...4">0.49, 1.3</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">0.62</td>
<td class="gt_row gt_left" headers="...8">0.27, 0.97</td>
<td class="gt_row gt_left" headers="...9">&lt;0.001</td>
</tr>
<tr class="even">
<td class="gt_row gt_left" headers="...1">Pre-stroke mRS &gt; 0</td>
<td class="gt_row gt_right" headers="...2">523</td>
<td class="gt_row gt_right" headers="...3">-58</td>
<td class="gt_row gt_left" headers="...4">-77, -38</td>
<td class="gt_row gt_left" headers="...5">&lt;0.001</td>
<td class="gt_row gt_right" headers="...6">423</td>
<td class="gt_row gt_right" headers="...7">-16</td>
<td class="gt_row gt_left" headers="...8">-34, 2.5</td>
<td class="gt_row gt_left" headers="...9">0.091</td>
</tr>
</tbody>
</table>
</div>
</div>
</div>
</main>
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button.setAttribute("data-bs-toggle", "tooltip");
button.setAttribute("data-bs-placement", "left");
button.setAttribute("data-bs-title", "Copied!");
tooltip = new bootstrap.Tooltip(button,
{ trigger: "manual",
customClass: "code-copy-button-tooltip",
offset: [0, -8]});
tooltip.show();
}
setTimeout(function() {
if (tooltip) {
tooltip.hide();
button.removeAttribute("data-bs-title");
button.removeAttribute("data-bs-toggle");
button.removeAttribute("data-bs-placement");
}
button.setAttribute("title", currentTitle);
button.classList.remove('code-copy-button-checked');
}, 1000);
// clear code selection
e.clearSelection();
});
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
maxWidth: 500,
delay: 100,
arrow: false,
appendTo: function(el) {
return el.parentElement;
},
interactive: true,
interactiveBorder: 10,
theme: 'quarto',
placement: 'bottom-start',
};
if (contentFn) {
config.content = contentFn;
}
if (onTriggerFn) {
config.onTrigger = onTriggerFn;
}
if (onUntriggerFn) {
config.onUntrigger = onUntriggerFn;
}
window.tippy(el, config);
}
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
for (var i=0; i<noterefs.length; i++) {
const ref = noterefs[i];
tippyHover(ref, function() {
// use id or data attribute instead here
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
return note.innerHTML;
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
const processXRef = (id, note) => {
// Strip column container classes
const stripColumnClz = (el) => {
el.classList.remove("page-full", "page-columns");
if (el.children) {
for (const child of el.children) {
stripColumnClz(child);
}
}
}
stripColumnClz(note)
if (id === null || id.startsWith('sec-')) {
// Special case sections, only their first couple elements
const container = document.createElement("div");
if (note.children && note.children.length > 2) {
container.appendChild(note.children[0].cloneNode(true));
for (let i = 1; i < note.children.length; i++) {
const child = note.children[i];
if (child.tagName === "P" && child.innerText === "") {
continue;
} else {
container.appendChild(child.cloneNode(true));
break;
}
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(container);
}
return container.innerHTML
} else {
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
return note.innerHTML;
}
} else {
// Remove any anchor links if they are present
const anchorLink = note.querySelector('a.anchorjs-link');
if (anchorLink) {
anchorLink.remove();
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
// TODO in 1.5, we should make sure this works without a callout special case
if (note.classList.contains("callout")) {
return note.outerHTML;
} else {
return note.innerHTML;
}
}
}
for (var i=0; i<xrefs.length; i++) {
const xref = xrefs[i];
tippyHover(xref, undefined, function(instance) {
instance.disable();
let url = xref.getAttribute('href');
let hash = undefined;
if (url.startsWith('#')) {
hash = url;
} else {
try { hash = new URL(url).hash; } catch {}
}
if (hash) {
const id = hash.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note !== null) {
try {
const html = processXRef(id, note.cloneNode(true));
instance.setContent(html);
} finally {
instance.enable();
instance.show();
}
} else {
// See if we can fetch this
fetch(url.split('#')[0])
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.getElementById(id);
if (note !== null) {
const html = processXRef(id, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
} else {
// See if we can fetch a full url (with no hash to target)
// This is a special case and we should probably do some content thinning / targeting
fetch(url)
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.querySelector('main.content');
if (note !== null) {
// This should only happen for chapter cross references
// (since there is no id in the URL)
// remove the first header
if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
note.children[0].remove();
}
const html = processXRef(null, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
}, function(instance) {
});
}
let selectedAnnoteEl;
const selectorForAnnotation = ( cell, annotation) => {
let cellAttr = 'data-code-cell="' + cell + '"';
let lineAttr = 'data-code-annotation="' + annotation + '"';
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
return selector;
}
const selectCodeLines = (annoteEl) => {
const doc = window.document;
const targetCell = annoteEl.getAttribute("data-target-cell");
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
const lineIds = lines.map((line) => {
return targetCell + "-" + line;
})
let top = null;
let height = null;
let parent = null;
if (lineIds.length > 0) {
//compute the position of the single el (top and bottom and make a div)
const el = window.document.getElementById(lineIds[0]);
top = el.offsetTop;
height = el.offsetHeight;
parent = el.parentElement.parentElement;
if (lineIds.length > 1) {
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
height = bottom - top;
}
if (top !== null && height !== null && parent !== null) {
// cook up a div (if necessary) and position it
let div = window.document.getElementById("code-annotation-line-highlight");
if (div === null) {
div = window.document.createElement("div");
div.setAttribute("id", "code-annotation-line-highlight");
div.style.position = 'absolute';
parent.appendChild(div);
}
div.style.top = top - 2 + "px";
div.style.height = height + 4 + "px";
div.style.left = 0;
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
if (gutterDiv === null) {
gutterDiv = window.document.createElement("div");
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
gutterDiv.style.position = 'absolute';
const codeCell = window.document.getElementById(targetCell);
const gutter = codeCell.querySelector('.code-annotation-gutter');
gutter.appendChild(gutterDiv);
}
gutterDiv.style.top = top - 2 + "px";
gutterDiv.style.height = height + 4 + "px";
}
selectedAnnoteEl = annoteEl;
}
};
const unselectCodeLines = () => {
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
elementsIds.forEach((elId) => {
const div = window.document.getElementById(elId);
if (div) {
div.remove();
}
});
selectedAnnoteEl = undefined;
};
// Handle positioning of the toggle
window.addEventListener(
"resize",
throttle(() => {
elRect = undefined;
if (selectedAnnoteEl) {
selectCodeLines(selectedAnnoteEl);
}
}, 10)
);
function throttle(fn, ms) {
let throttle = false;
let timer;
return (...args) => {
if(!throttle) { // first call gets through
fn.apply(this, args);
throttle = true;
} else { // all the others get throttled
if(timer) clearTimeout(timer); // cancel #2
timer = setTimeout(() => {
fn.apply(this, args);
timer = throttle = false;
}, ms);
}
};
}
// Attach click handler to the DT
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
for (const annoteDlNode of annoteDls) {
annoteDlNode.addEventListener('click', (event) => {
const clickedEl = event.target;
if (clickedEl !== selectedAnnoteEl) {
unselectCodeLines();
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
if (activeEl) {
activeEl.classList.remove('code-annotation-active');
}
selectCodeLines(clickedEl);
clickedEl.classList.add('code-annotation-active');
} else {
// Unselect the line
unselectCodeLines();
clickedEl.classList.remove('code-annotation-active');
}
});
}
const findCites = (el) => {
const parentEl = el.parentElement;
if (parentEl) {
const cites = parentEl.dataset.cites;
if (cites) {
return {
el,
cites: cites.split(' ')
};
} else {
return findCites(el.parentElement)
}
} else {
return undefined;
}
};
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
for (var i=0; i<bibliorefs.length; i++) {
const ref = bibliorefs[i];
const citeInfo = findCites(ref);
if (citeInfo) {
tippyHover(citeInfo.el, function() {
var popup = window.document.createElement('div');
citeInfo.cites.forEach(function(cite) {
var citeDiv = window.document.createElement('div');
citeDiv.classList.add('hanging-indent');
citeDiv.classList.add('csl-entry');
var biblioDiv = window.document.getElementById('ref-' + cite);
if (biblioDiv) {
citeDiv.innerHTML = biblioDiv.innerHTML;
}
popup.appendChild(citeDiv);
});
return popup.innerHTML;
});
}
}
});
</script>
</div> <!-- /content -->
</body></html>
Reference in a new issue Copy permalink