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641 lines
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HTML
641 lines
22 KiB
HTML
<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.10/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.10/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Package index"></head><body>
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<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
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<nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
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<a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.4.3</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<div id="navbar" class="collapse navbar-collapse ms-3">
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<ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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<li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
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<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
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<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/FreesearchR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
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</ul></div>
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</div>
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</nav><div class="container template-reference-index">
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<h1>Package index</h1>
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</div>
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<div class="section level2">
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<h2 id="all-functions">All functions<a class="anchor" aria-label="anchor" href="#all-functions"></a></h2>
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</div><div class="section level2">
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<dl><dt>
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<code><a href="add_class_icon.html">add_class_icon()</a></code>
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</dt>
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<dd>Convert class grid column to icon</dd>
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</dl><dl><dt>
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<code><a href="add_sparkline.html">add_sparkline()</a></code>
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</dt>
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<dd>Add sparkline to datagrid</dd>
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</dl><dl><dt>
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<code><a href="align_axes.html">align_axes()</a></code>
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</dt>
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<dd>Aligns axes between plots</dd>
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</dl><dl><dt>
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<code><a href="all_but.html">all_but()</a></code>
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</dt>
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<dd>Select all from vector but</dd>
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</dl><dl><dt>
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<code><a href="append_column.html">append_column()</a></code>
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</dt>
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<dd>Append a column to a data.frame</dd>
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</dl><dl><dt>
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<code><a href="append_list.html">append_list()</a></code>
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</dt>
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<dd>Append list with named index</dd>
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</dl><dl><dt>
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<code><a href="argsstring2list.html">argsstring2list()</a></code>
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</dt>
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<dd>Convert string of arguments to list of arguments</dd>
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</dl><dl><dt>
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<code><a href="baseline_table.html">baseline_table()</a></code>
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</dt>
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<dd>Print a flexible baseline characteristics table</dd>
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</dl><dl><dt>
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<code><a href="class_icons.html">class_icons()</a></code>
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</dt>
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<dd>Get data class icons</dd>
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</dl><dl><dt>
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<code><a href="clean_common_axis.html">clean_common_axis()</a></code>
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</dt>
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<dd>Extract and clean axis ranges</dd>
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</dl><dl><dt>
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<code><a href="clean_date.html">clean_date()</a></code>
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</dt>
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<dd>Attempts at applying uniform date format</dd>
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</dl><dl><dt>
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<code><a href="clean_sep.html">clean_sep()</a></code>
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</dt>
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<dd>gsub wrapper for piping with default values for separator substituting</dd>
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</dl><dl><dt>
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<code><a href="columnSelectInput.html">columnSelectInput()</a></code>
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</dt>
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<dd>A selectizeInput customized for data frames with column labels</dd>
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</dl><dl><dt>
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<code><a href="contrast_text.html">contrast_text()</a></code>
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</dt>
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<dd>Contrast Text Color</dd>
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</dl><dl><dt>
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<code><a href="create_baseline.html">create_baseline()</a></code>
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</dt>
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<dd>Create a baseline table</dd>
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</dl><dl><dt>
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<code><a href="create_log_tics.html">create_log_tics()</a></code>
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</dt>
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<dd>Create summetric log ticks</dd>
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</dl><dl><dt>
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<code><a href="create_overview_datagrid.html">create_overview_datagrid()</a></code>
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</dt>
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<dd>Create a data overview datagrid</dd>
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</dl><dl><dt>
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<code><a href="custom_theme.html">custom_theme()</a></code>
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</dt>
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<dd>Custom theme based on unity</dd>
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</dl><dl><dt>
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<code><a href="cut-variable.html">cut_variable_ui()</a></code> <code><a href="cut-variable.html">cut_variable_server()</a></code> <code><a href="cut-variable.html">modal_cut_variable()</a></code>
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</dt>
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<dd>Module to Convert Numeric to Factor</dd>
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</dl><dl><dt>
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<code><a href="cut_var.html">cut_var()</a></code>
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</dt>
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<dd>Extended cutting function with fall-back to the native base::cut</dd>
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</dl><dl><dt>
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<code><a href="data-correlations.html">data_correlations_ui()</a></code> <code><a href="data-correlations.html">data_correlations_server()</a></code>
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</dt>
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<dd>Data correlations evaluation module</dd>
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</dl><dl><dt>
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<code><a href="data-import.html">data_import_demo_app()</a></code>
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</dt>
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<dd>Test app for the data-import module</dd>
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</dl><dl><dt>
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<code><a href="data-plots.html">data_visuals_ui()</a></code> <code><a href="data-plots.html">data_visuals_server()</a></code> <code><a href="data-plots.html">create_plot()</a></code> <code><a href="data-plots.html">plot_box()</a></code> <code><a href="data-plots.html">plot_box_single()</a></code> <code><a href="data-plots.html">plot_hbars()</a></code> <code><a href="data-plots.html">plot_ridge()</a></code> <code><a href="data-plots.html">sankey_ready()</a></code> <code><a href="data-plots.html">plot_sankey()</a></code> <code><a href="data-plots.html">plot_scatter()</a></code> <code><a href="data-plots.html">plot_violin()</a></code>
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</dt>
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<dd>Data correlations evaluation module</dd>
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</dl><dl><dt>
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<code><a href="data-summary.html">data_summary_ui()</a></code> <code><a href="data-summary.html">data_summary_server()</a></code>
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</dt>
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<dd>Data summary module</dd>
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</dl><dl><dt>
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<code><a href="data_description.html">data_description()</a></code>
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</dt>
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<dd>Ultra short data dascription</dd>
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</dl><dl><dt>
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<code><a href="data_type.html">data_type()</a></code>
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</dt>
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<dd>Data type assessment.</dd>
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</dl><dl><dt>
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<code><a href="data_type_filter.html">data_type_filter()</a></code>
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</dt>
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<dd>Filter function to filter data set by variable type</dd>
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</dl><dl><dt>
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<code><a href="data_types.html">data_types()</a></code>
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</dt>
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<dd>Recognised data types from data_type</dd>
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</dl><dl><dt>
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<code><a href="default_format_arguments.html">default_format_arguments()</a></code>
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</dt>
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<dd>Defaults qmd formats</dd>
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</dl><dl><dt>
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<code><a href="default_parsing.html">default_parsing()</a></code>
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</dt>
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<dd>Default data parsing</dd>
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</dl><dl><dt>
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<code><a href="drop_empty_event.html">drop_empty_event()</a></code>
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</dt>
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<dd>Drop empty events from REDCap export</dd>
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</dl><dl><dt>
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<code><a href="expression_string.html">expression_string()</a></code>
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</dt>
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<dd>Deparses expression as string, substitutes native pipe and adds assign</dd>
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</dl><dl><dt>
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<code><a href="factorize.html">factorize()</a></code>
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</dt>
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<dd>Factorize variables in data.frame</dd>
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</dl><dl><dt>
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<code><a href="file_export.html">file_export()</a></code>
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</dt>
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<dd>Title</dd>
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</dl><dl><dt>
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<code><a href="format_writer.html">format_writer()</a></code>
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</dt>
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<dd>Merges list of named arguments for qmd header generation</dd>
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</dl><dl><dt>
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<code><a href="get_fun_options.html">get_fun_options()</a></code>
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</dt>
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<dd>Get the function options based on the selected function description</dd>
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</dl><dl><dt>
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<code><a href="get_label.html">get_label()</a></code>
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</dt>
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<dd>Print label, and if missing print variable name</dd>
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</dl><dl><dt>
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<code><a href="get_plot_options.html">get_plot_options()</a></code>
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</dt>
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<dd>Get the function options based on the selected function description</dd>
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</dl><dl><dt>
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<code><a href="getfun.html">getfun()</a></code>
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</dt>
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<dd>Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'</dd>
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</dl><dl><dt>
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<code><a href="gg_theme_export.html">gg_theme_export()</a></code>
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</dt>
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<dd>GGplot default theme for plotting export objects</dd>
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</dl><dl><dt>
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<code><a href="gg_theme_shiny.html">gg_theme_shiny()</a></code>
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</dt>
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<dd>GGplot default theme for plotting in Shiny</dd>
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</dl><dl><dt>
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<code><a href="ggeulerr.html">ggeulerr()</a></code>
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</dt>
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<dd>Area proportional venn diagrams</dd>
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</dl><dl><dt>
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<code><a href="grepl_fix.html">grepl_fix()</a></code>
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</dt>
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<dd>Matches pattern to vector based on match type</dd>
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</dl><dl><dt>
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<code><a href="if_not_missing.html">if_not_missing()</a></code>
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</dt>
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<dd>Return if available</dd>
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</dl><dl><dt>
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<code><a href="import-file-type.html">import_delim()</a></code> <code><a href="import-file-type.html">import_xls()</a></code> <code><a href="import-file-type.html">import_ods()</a></code> <code><a href="import-file-type.html">import_dta()</a></code> <code><a href="import-file-type.html">import_rds()</a></code>
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</dt>
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<dd>Wrapper to ease data file import</dd>
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</dl><dl><dt>
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<code><a href="import-file.html">import_file_ui()</a></code> <code><a href="import-file.html">import_file_server()</a></code>
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</dt>
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<dd>Import data from a file</dd>
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</dl><dl><dt>
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<code><a href="import-file_module.html">import_file_demo_app()</a></code>
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</dt>
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<dd>Test app for the import_file module</dd>
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</dl><dl><dt>
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<code><a href="index_embed.html">index_embed()</a></code>
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</dt>
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<dd>Split vector by an index and embed addition</dd>
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</dl><dl><dt>
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<code><a href="is_any_class.html">is_any_class()</a></code>
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</dt>
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<dd>Test class</dd>
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</dl><dl><dt>
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<code><a href="is_consecutive.html">is_consecutive()</a></code>
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</dt>
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<dd>Checks if elements in vector are equally spaced as indication of ID</dd>
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</dl><dl><dt>
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<code><a href="is_datetime.html">is_datetime()</a></code>
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</dt>
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<dd>Test is date/datetime/time</dd>
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</dl><dl><dt>
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<code><a href="is_identical_to_previous.html">is_identical_to_previous()</a></code>
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</dt>
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<dd>Test if element is identical to the previous</dd>
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</dl><dl><dt>
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<code><a href="is_valid_redcap_url.html">is_valid_redcap_url()</a></code>
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</dt>
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<dd>Test if url is valid format for REDCap API</dd>
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</dl><dl><dt>
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<code><a href="is_valid_token.html">is_valid_token()</a></code>
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</dt>
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<dd>Validate REDCap token</dd>
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</dl><dl><dt>
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<code><a href="launch_FreesearchR.html">launch_FreesearchR()</a></code>
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</dt>
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<dd>Easily launch the FreesearchR app</dd>
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</dl><dl><dt>
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<code><a href="limit_log.html">limit_log()</a></code>
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</dt>
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<dd>Easily round log scale limits for nice plots</dd>
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</dl><dl><dt>
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<code><a href="line_break.html">line_break()</a></code>
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</dt>
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<dd>Line breaking at given number of characters for nicely plotting labels</dd>
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</dl><dl><dt>
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<code><a href="merge_expression.html">merge_expression()</a></code>
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</dt>
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<dd>Merge list of expressions</dd>
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</dl><dl><dt>
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<code><a href="merge_long.html">merge_long()</a></code>
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</dt>
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<dd>Wrapper to pivot gtsummary table data to long for plotting</dd>
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</dl><dl><dt>
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<code><a href="missing_fraction.html">missing_fraction()</a></code>
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</dt>
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<dd>Get missingsness fraction</dd>
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</dl><dl><dt>
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<code><a href="modify_qmd.html">modify_qmd()</a></code>
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</dt>
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<dd>Wrapper to modify quarto file to render specific formats</dd>
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</dl><dl><dt>
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<code><a href="overview_vars.html">overview_vars()</a></code>
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</dt>
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<dd>Create a data overview data.frame ready for sparklines</dd>
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</dl><dl><dt>
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<code><a href="pipe_string.html">pipe_string()</a></code>
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</dt>
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<dd>Reduce character vector with the native pipe operator or character string</dd>
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</dl><dl><dt>
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<code><a href="plot.tbl_regression.html">plot(<i><tbl_regression></i>)</a></code>
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</dt>
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<dd>Regression coef plot from gtsummary. Slightly modified to pass on arguments</dd>
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</dl><dl><dt>
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<code><a href="plot_euler.html">plot_euler()</a></code>
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</dt>
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<dd>Easily plot euler diagrams</dd>
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</dl><dl><dt>
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<code><a href="plot_euler_single.html">plot_euler_single()</a></code>
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</dt>
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<dd>Easily plot single euler diagrams</dd>
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</dl><dl><dt>
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<code><a href="plot_sankey_single.html">plot_sankey_single()</a></code>
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</dt>
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<dd>Beautiful sankey plot</dd>
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</dl><dl><dt>
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<code><a href="possible_functions.html">possible_functions()</a></code>
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</dt>
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<dd>Get possible regression models</dd>
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</dl><dl><dt>
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<code><a href="possible_plots.html">possible_plots()</a></code>
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</dt>
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<dd>Get possible regression models</dd>
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</dl><dl><dt>
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<code><a href="read_input.html">read_input()</a></code>
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</dt>
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<dd>Flexible file import based on extension</dd>
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</dl><dl><dt>
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<code><a href="redcap_read_shiny_module.html">m_redcap_readUI()</a></code> <code><a href="redcap_read_shiny_module.html">m_redcap_readServer()</a></code> <code><a href="redcap_read_shiny_module.html">redcap_demo_app()</a></code>
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</dt>
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<dd>Shiny module to browser and export REDCap data</dd>
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</dl><dl><dt>
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<code><a href="regression_model.html">regression_model()</a></code> <code><a href="regression_model.html">regression_model_uv()</a></code> <code><a href="regression_model.html">regression_model_list()</a></code> <code><a href="regression_model.html">regression_model_uv_list()</a></code>
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</dt>
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<dd>Create a regression model programatically</dd>
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</dl><dl><dt>
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<code><a href="regression_table.html">regression_table()</a></code>
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</dt>
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<dd>Create table of regression model</dd>
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</dl><dl><dt>
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<code><a href="remove_empty_attr.html">remove_empty_attr()</a></code>
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</dt>
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<dd>Remove empty/NA attributes</dd>
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</dl><dl><dt>
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<code><a href="remove_empty_cols.html">remove_empty_cols()</a></code>
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</dt>
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<dd>Removes columns with completenes below cutoff</dd>
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</dl><dl><dt>
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<code><a href="remove_nested_list.html">remove_nested_list()</a></code>
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</dt>
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<dd>Very simple function to remove nested lists, like when uploading .rds</dd>
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</dl><dl><dt>
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<code><a href="repeated_instruments.html">repeated_instruments()</a></code>
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</dt>
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<dd>Get names of repeated instruments</dd>
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</dl><dl><dt>
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<code><a href="selectInputIcon.html">selectInputIcon()</a></code>
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</dt>
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<dd>Create a select input control with icon(s)</dd>
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</dl><dl><dt>
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<code><a href="set_column_label.html">set_column_label()</a></code>
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</dt>
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<dd>(Re)label columns in data.frame</dd>
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</dl><dl><dt>
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<code><a href="sort_by.html">sort_by()</a></code>
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</dt>
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<dd>Drop-in replacement for the base::sort_by with option to remove NAs</dd>
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</dl><dl><dt>
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<code><a href="specify_qmd_format.html">specify_qmd_format()</a></code>
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</dt>
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<dd>Specify format arguments to include in qmd header/frontmatter</dd>
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</dl><dl><dt>
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<code><a href="subset_types.html">subset_types()</a></code>
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</dt>
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<dd>Easily subset by data type function</dd>
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</dl><dl><dt>
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<code><a href="supported_functions.html">supported_functions()</a></code>
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</dt>
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<dd>Implemented functions</dd>
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</dl><dl><dt>
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<code><a href="supported_plots.html">supported_plots()</a></code>
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</dt>
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<dd>Implemented functions</dd>
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</dl><dl><dt>
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<code><a href="symmetrical_scale_x_log10.html">symmetrical_scale_x_log10()</a></code>
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</dt>
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<dd>Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots</dd>
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</dl><dl><dt>
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<code><a href="tbl_merge.html">tbl_merge()</a></code>
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</dt>
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<dd>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.</dd>
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</dl><dl><dt>
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<code><a href="type_icons.html">type_icons()</a></code>
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</dt>
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<dd>Get data type icons</dd>
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</dl><dl><dt>
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<code><a href="update-factor.html">update_factor_ui()</a></code> <code><a href="update-factor.html">update_factor_server()</a></code> <code><a href="update-factor.html">modal_update_factor()</a></code> <code><a href="update-factor.html">winbox_update_factor()</a></code>
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</dt>
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<dd>Module to Reorder the Levels of a Factor Variable</dd>
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</dl><dl><dt>
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<code><a href="update-variables.html">update_variables_ui()</a></code> <code><a href="update-variables.html">update_variables_server()</a></code>
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</dt>
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<dd>Select, rename and convert variables</dd>
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</dl><dl><dt>
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<code><a href="update_variables_datagrid.html">update_variables_datagrid()</a></code>
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</dt>
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<dd>Modified from the datamods pacakge</dd>
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</dl><dl><dt>
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<code><a href="vectorSelectInput.html">vectorSelectInput()</a></code>
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</dt>
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<dd>A selectizeInput customized for named vectors</dd>
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</dl><dl><dt>
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<code><a href="vertical_stacked_bars.html">vertical_stacked_bars()</a></code>
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</dt>
|
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<dd>Vertical stacked bar plot wrapper</dd>
|
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</dl><dl><dt>
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<code><a href="wide2long.html">wide2long()</a></code>
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</dt>
|
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<dd>Alternative pivoting method for easily pivoting based on name pattern</dd>
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</dl><dl><dt>
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<code><a href="wrap_plot_list.html">wrap_plot_list()</a></code>
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</dt>
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<dd>Wrapping</dd>
|
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</dl><dl><dt>
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<code><a href="write_quarto.html">write_quarto()</a></code>
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</dt>
|
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<dd>Wrapper to save data in RDS, load into specified qmd and render</dd>
|
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</dl></div>
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