diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 7e9695a2..df98c7a0 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -38,7 +38,7 @@

Contributor Covenant Code of Conduct

- Source: CODE_OF_CONDUCT.md + Source: CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index 2d89ed3e..91572b9c 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -38,7 +38,7 @@

GNU Affero General Public License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/QA.html b/QA.html index 85ddb94a..51ed05c3 100644 --- a/QA.html +++ b/QA.html @@ -38,7 +38,7 @@

Questions and answers

- Source: QA.md + Source: QA.md
diff --git a/ROADMAP.html b/ROADMAP.html index bb442ee1..69d76d30 100644 --- a/ROADMAP.html +++ b/ROADMAP.html @@ -38,7 +38,7 @@

Project roadmap

- Source: ROADMAP.md + Source: ROADMAP.md
diff --git a/SESSION.html b/SESSION.html index 8bce7fe7..494de17f 100644 --- a/SESSION.html +++ b/SESSION.html @@ -38,12 +38,12 @@

NA

- Source: SESSION.md + Source: SESSION.md
- +
——————————– R environment ———————————
|setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-03-02 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.1.260302 |
|setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-02-28 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.1.260228 |

———————————– packages ———————————–

@@ -134,46 +134,46 @@ - - - - - + - + - + - + - + - + - + - + - + + + + + @@ -314,78 +314,86 @@ - + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + @@ -410,22 +418,22 @@ - - - - - + - + - + + + + + @@ -510,102 +518,102 @@ - + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - @@ -802,18 +810,26 @@ - + + + + + - + - + + + + + @@ -822,51 +838,47 @@ - - - - - + - + - + - + - + - + - + - + - + - + - + diff --git a/SESSION.md b/SESSION.md index 2dd10426..4b3054d7 100644 --- a/SESSION.md +++ b/SESSION.md @@ -2,7 +2,7 @@ | ——————————– R environment ——————————— | |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-03-02 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.1.260302 \| | +| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-02-28 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.1.260228 \| | ## ———————————– packages ———————————– @@ -29,7 +29,6 @@ | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | -| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -39,6 +38,7 @@ | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | +| crul | 1.6.0 | NA | NA | | curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | @@ -74,6 +74,7 @@ | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | +| gfonts | 0.2.0 | NA | NA | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | @@ -92,16 +93,17 @@ | htmlTable | 2.4.3 | 2024-07-21 | CRAN (R 4.5.0) | | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | +| httpcode | 0.3.0 | NA | NA | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | -| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | +| labeling | 0.4.3 | 2023-08-29 | CRAN (R 4.5.0) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | @@ -123,6 +125,7 @@ | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | +| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -146,7 +149,6 @@ | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | -| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -196,12 +198,13 @@ | tidyselect | 1.2.1 | 2024-03-11 | CRAN (R 4.5.0) | | timechange | 0.4.0 | 2026-01-29 | CRAN (R 4.5.2) | | toastui | 0.4.0 | 2025-04-03 | CRAN (R 4.5.0) | +| triebeard | 0.4.1 | NA | NA | | tweenr | 2.0.3 | 2024-02-26 | CRAN (R 4.5.0) | | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | +| urltools | 1.7.3.1 | NA | NA | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | -| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index fbcb5659..490e225b 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -73,7 +73,7 @@

FreesearchR

- Source: vignettes/FreesearchR.Rmd + Source: vignettes/FreesearchR.Rmd
FreesearchR.Rmd
diff --git a/articles/data-types.html b/articles/data-types.html index 725a57de..36557632 100644 --- a/articles/data-types.html +++ b/articles/data-types.html @@ -73,7 +73,7 @@

Data types

- Source: vignettes/data-types.Rmd + Source: vignettes/data-types.Rmd
data-types.Rmd
diff --git a/articles/missingness.html b/articles/missingness.html index 09f1b0d3..8ad570cd 100644 --- a/articles/missingness.html +++ b/articles/missingness.html @@ -73,7 +73,7 @@

Missingness in data

- Source: vignettes/missingness.Rmd + Source: vignettes/missingness.Rmd
missingness.Rmd
diff --git a/articles/session.html b/articles/session.html index 258332d6..f5be7577 100644 --- a/articles/session.html +++ b/articles/session.html @@ -73,7 +73,7 @@

Session info

- Source: vignettes/session.Rmd + Source: vignettes/session.Rmd
session.Rmd
@@ -133,7 +133,7 @@ packages and the latest build info.

- + @@ -149,7 +149,7 @@ packages and the latest build info.

- +
package1.1.0 2016-07-27 CRAN (R 4.5.0)
cffr1.2.12026-01-12CRAN (R 4.5.2)
checkmate
checkmate 2.3.4 2026-02-03 CRAN (R 4.5.2)
class
class 7.3-23 2025-01-01 CRAN (R 4.5.2)
classInt
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cli
cli 3.6.5 2025-04-23 CRAN (R 4.5.0)
cluster
cluster 2.1.8.2 2026-02-05 CRAN (R 4.5.2)
codetools
codetools 0.2-20 2024-03-31 CRAN (R 4.5.2)
colorspace
colorspace 2.1-2 2025-09-22 CRAN (R 4.5.0)
commonmark
commonmark 2.0.0 2025-07-07 CRAN (R 4.5.0)
crayon
crayon 1.5.3 2024-06-20 CRAN (R 4.5.0)
crul1.6.0NANA
curl 7.0.0 2025-08-190.1.4 2025-05-09 CRAN (R 4.5.0)
ggalluvial
gfonts0.2.0NANA
ggalluvial 0.12.5 2023-02-22 CRAN (R 4.5.0)
ggcorrplot
ggcorrplot 0.1.4.1 2023-09-05 CRAN (R 4.5.0)
ggforce
ggforce 0.5.0 2025-06-18 CRAN (R 4.5.0)
ggplot2
ggplot2 4.0.2 2026-02-03 CRAN (R 4.5.2)
ggridges
ggridges 0.5.7 2025-08-27 CRAN (R 4.5.0)
ggstats
ggstats 0.12.0 2025-12-22 CRAN (R 4.5.2)
glue
glue 1.8.0 2024-09-30 CRAN (R 4.5.0)
gridExtra
gridExtra 2.3 2017-09-09 CRAN (R 4.5.0)
gt
gt 1.3.0 2026-01-22 CRAN (R 4.5.2)
gtable
gtable 0.3.6 2024-10-25 CRAN (R 4.5.0)
gtsummary
gtsummary 2.5.0 2025-12-05 CRAN (R 4.5.2)
haven
haven 2.5.5 2025-05-30 CRAN (R 4.5.0)
here
here 1.0.2 2025-09-15 CRAN (R 4.5.0)
Hmisc
Hmisc 5.2-5 2026-01-09 CRAN (R 4.5.2)
hms
hms 1.1.4 2025-10-17 CRAN (R 4.5.0)
htmlTable
htmlTable 2.4.3 2024-07-21 CRAN (R 4.5.0)
htmltools
htmltools 0.5.9 2025-12-04 CRAN (R 4.5.2)
htmlwidgets
htmlwidgets 1.6.4 2023-12-06 CRAN (R 4.5.0)
httpcode0.3.0NANA
httpuv 1.6.16 2025-04-162.0.0 2025-03-27 CRAN (R 4.5.0)
jsonvalidate1.5.02025-02-07CRAN (R 4.5.0)
KernSmooth
KernSmooth 2.23-26 2025-01-01 CRAN (R 4.5.2)
keyring
keyring 1.4.1 2025-06-15 CRAN (R 4.5.0)
knitr
knitr 1.51 2025-12-20 CRAN (R 4.5.2)
labeling0.4.32023-08-29CRAN (R 4.5.0)
later 1.4.6 2026-02-130.2.0 2025-08-29 CRAN (R 4.5.0)
parameters
pak0.9.22025-12-22CRAN (R 4.5.2)
parameters 0.28.3 2025-11-25 CRAN (R 4.5.2)
patchwork
patchwork 1.3.2 2025-08-25 CRAN (R 4.5.0)
pbmcapply
pbmcapply 1.5.1 2022-04-28 CRAN (R 4.5.0)
performance
performance 0.16.0 2026-02-04 CRAN (R 4.5.2)
phosphoricons
phosphoricons 0.2.1 2024-04-08 CRAN (R 4.5.0)
pillar
pillar 1.11.1 2025-09-17 CRAN (R 4.5.0)
pkgbuild
pkgbuild 1.4.8 2025-05-26 CRAN (R 4.5.0)
pkgconfig
pkgconfig 2.0.3 2019-09-22 CRAN (R 4.5.0)
pkgload
pkgload 1.5.0 2026-02-03 CRAN (R 4.5.2)
plyr
plyr 1.8.9 2023-10-02 CRAN (R 4.5.0)
polyclip
polyclip 1.10-7 2024-07-23 CRAN (R 4.5.0)
pracma
pracma 2.4.6 2025-10-22 CRAN (R 4.5.0)
processx
processx 3.8.6 2025-02-21 CRAN (R 4.5.0)
promises
promises 1.5.0 2025-11-01 CRAN (R 4.5.0)
proxy
proxy 0.4-29 2025-12-29 CRAN (R 4.5.2)
ps
ps 1.9.1 2025-04-12 CRAN (R 4.5.0)
purrr
purrr 1.2.1 2026-01-09 CRAN (R 4.5.2)
qqconf
qqconf 1.3.2 2023-04-14 CRAN (R 4.5.0)
qqplotr
qqplotr 0.0.7 2025-09-05 CRAN (R 4.5.0)
quarto
quarto 1.5.1 2025-09-04 CRAN (R 4.5.0)
R6
R6 2.6.1 2025-02-15 CRAN (R 4.5.0)
ragg
ragg 1.5.0 2025-09-02 CRAN (R 4.5.0)
rankinPlot
rankinPlot 1.1.0 2023-01-30 CRAN (R 4.5.0)
rappdirs0.3.42026-01-17CRAN (R 4.5.2)
rbibutils 2.4.1 2026-01-210.4.0 2025-04-03 CRAN (R 4.5.0)
tweenr
triebeard0.4.1NANA
tweenr 2.0.3 2024-02-26 CRAN (R 4.5.0)
twosamples
twosamples 2.0.1 2023-06-23 CRAN (R 4.5.0)
tzdb
tzdb 0.5.0 2025-03-15 CRAN (R 4.5.0)
urltools1.7.3.1NANA
usethis 3.2.1 2025-09-061.2-2 2026-01-23 CRAN (R 4.5.2)
V88.0.12025-10-10CRAN (R 4.5.0)
vctrs
vctrs 0.7.1 2026-01-23 CRAN (R 4.5.2)
viridis
viridis 0.6.5 2024-01-29 CRAN (R 4.5.0)
viridisLite
viridisLite 0.4.3 2026-02-04 CRAN (R 4.5.2)
vroom
vroom 1.7.0 2026-01-27 CRAN (R 4.5.2)
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withr 3.0.2 2024-10-28 CRAN (R 4.5.0)
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zip
zip 2.3.3 2025-05-13 CRAN (R 4.5.0)
date2026-03-022026-02-28
rstudio
FreesearchR26.3.1.26030226.3.1.260228
@@ -294,65 +294,65 @@ packages and the latest build info.

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CRAN (R 4.5.0) +pak +0.9.2 +2025-12-22 +CRAN (R 4.5.2) + + parameters 0.28.3 2025-11-25 CRAN (R 4.5.2) - + patchwork 1.3.2 2025-08-25 CRAN (R 4.5.0) - + pbmcapply 1.5.1 2022-04-28 CRAN (R 4.5.0) - + performance 0.16.0 2026-02-04 CRAN (R 4.5.2) - + phosphoricons 0.2.1 2024-04-08 CRAN (R 4.5.0) - + pillar 1.11.1 2025-09-17 CRAN (R 4.5.0) - + pkgbuild 1.4.8 2025-05-26 CRAN (R 4.5.0) - + pkgconfig 2.0.3 2019-09-22 CRAN (R 4.5.0) - + pkgload 1.5.0 2026-02-03 CRAN (R 4.5.2) - + plyr 1.8.9 2023-10-02 CRAN (R 4.5.0) - + polyclip 1.10-7 2024-07-23 CRAN (R 4.5.0) - + pracma 2.4.6 2025-10-22 CRAN (R 4.5.0) - + processx 3.8.6 2025-02-21 CRAN (R 4.5.0) - + promises 1.5.0 2025-11-01 CRAN (R 4.5.0) - + proxy 0.4-29 2025-12-29 CRAN (R 4.5.2) - + ps 1.9.1 2025-04-12 CRAN (R 4.5.0) - + purrr 1.2.1 2026-01-09 CRAN (R 4.5.2) - + qqconf 1.3.2 2023-04-14 CRAN (R 4.5.0) - + qqplotr 0.0.7 2025-09-05 CRAN (R 4.5.0) - + quarto 1.5.1 2025-09-04 CRAN (R 4.5.0) - + R6 2.6.1 2025-02-15 CRAN (R 4.5.0) - + ragg 1.5.0 2025-09-02 CRAN (R 4.5.0) - + rankinPlot 1.1.0 2023-01-30 CRAN (R 4.5.0) - -rappdirs -0.3.4 -2026-01-17 -CRAN (R 4.5.2) - rbibutils 2.4.1 @@ -1296,23 +1308,35 @@ packages and the latest build info.

CRAN (R 4.5.0) +triebeard +0.4.1 +NA +NA + + tweenr 2.0.3 2024-02-26 CRAN (R 4.5.0) - + twosamples 2.0.1 2023-06-23 CRAN (R 4.5.0) - + tzdb 0.5.0 2025-03-15 CRAN (R 4.5.0) + +urltools +1.7.3.1 +NA +NA + usethis 3.2.1 @@ -1326,72 +1350,66 @@ packages and the latest build info.

CRAN (R 4.5.2) -V8 -8.0.1 -2025-10-10 -CRAN (R 4.5.0) - - vctrs 0.7.1 2026-01-23 CRAN (R 4.5.2) - + viridis 0.6.5 2024-01-29 CRAN (R 4.5.0) - + viridisLite 0.4.3 2026-02-04 CRAN (R 4.5.2) - + vroom 1.7.0 2026-01-27 CRAN (R 4.5.2) - + withr 3.0.2 2024-10-28 CRAN (R 4.5.0) - + writexl 1.5.4 2025-04-15 CRAN (R 4.5.0) - + xfun 0.56 2026-01-18 CRAN (R 4.5.2) - + xml2 1.5.2 2026-01-17 CRAN (R 4.5.2) - + xtable 1.8-4 2019-04-21 CRAN (R 4.5.0) - + yaml 2.3.12 2025-12-10 CRAN (R 4.5.2) - + zip 2.3.3 2025-05-13 diff --git a/articles/session.md b/articles/session.md index a35256e2..0c3168ef 100644 --- a/articles/session.md +++ b/articles/session.md @@ -28,11 +28,11 @@ FreesearchR:::session_data$platform |> knitr::kable() | collate | en_US.UTF-8 | | ctype | en_US.UTF-8 | | tz | Europe/Copenhagen | -| date | 2026-03-02 | +| date | 2026-02-28 | | rstudio | 2026.01.1+403 Apple Blossom (desktop) | | pandoc | 3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | | quarto | 1.7.30 @ /usr/local/bin/quarto | -| FreesearchR | 26.3.1.260302 | +| FreesearchR | 26.3.1.260228 | ## Libraries @@ -63,7 +63,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | -| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -73,6 +72,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | +| crul | 1.6.0 | NA | NA | | curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | @@ -108,6 +108,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | +| gfonts | 0.2.0 | NA | NA | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | @@ -126,16 +127,17 @@ FreesearchR:::session_data$libs|> knitr::kable() | htmlTable | 2.4.3 | 2024-07-21 | CRAN (R 4.5.0) | | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | +| httpcode | 0.3.0 | NA | NA | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | -| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | +| labeling | 0.4.3 | 2023-08-29 | CRAN (R 4.5.0) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | @@ -157,6 +159,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | +| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -180,7 +183,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | -| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -230,12 +232,13 @@ FreesearchR:::session_data$libs|> knitr::kable() | tidyselect | 1.2.1 | 2024-03-11 | CRAN (R 4.5.0) | | timechange | 0.4.0 | 2026-01-29 | CRAN (R 4.5.2) | | toastui | 0.4.0 | 2025-04-03 | CRAN (R 4.5.0) | +| triebeard | 0.4.1 | NA | NA | | tweenr | 2.0.3 | 2024-02-26 | CRAN (R 4.5.0) | | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | +| urltools | 1.7.3.1 | NA | NA | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | -| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/articles/visuals.html b/articles/visuals.html index 2d7d07c3..9631fe40 100644 --- a/articles/visuals.html +++ b/articles/visuals.html @@ -73,7 +73,7 @@

On visuals

- Source: vignettes/visuals.Rmd + Source: vignettes/visuals.Rmd
visuals.Rmd
diff --git a/authors.html b/authors.html index 970eed6d..5bef0b55 100644 --- a/authors.html +++ b/authors.html @@ -59,7 +59,7 @@

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Damsbo A (2026). FreesearchR: Easy data analysis for clinicians. diff --git a/authors.md b/authors.md index 591fff5f..55c51915 100644 --- a/authors.md +++ b/authors.md @@ -12,7 +12,7 @@ ## Citation Source: -[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/v26.3.1/DESCRIPTION) +[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/main/DESCRIPTION) Damsbo A (2026). *FreesearchR: Easy data analysis for clinicians*. R package version 26.3.1, . diff --git a/llms.txt b/llms.txt index fa0b6e32..2797d73a 100644 --- a/llms.txt +++ b/llms.txt @@ -126,8 +126,6 @@ No tracking data is sent running the app locally (see above). - [`FreesearchR_palette()`](https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.md) : Use the FreesearchR colors -- [`FreesearchR_theme()`](https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.md) - : Custom theme based on unity - [`add_class_icon()`](https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.md) : Convert class grid column to icon - [`add_sparkline()`](https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.md) @@ -177,6 +175,8 @@ No tracking data is sent running the app locally (see above). : Create summetric log ticks - [`create_overview_datagrid()`](https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.md) : Create a data overview datagrid +- [`custom_theme()`](https://agdamsbo.github.io/FreesearchR/reference/custom_theme.md) + : Custom theme based on unity - [`cut_variable_ui()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) [`cut_variable_server()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) [`modal_cut_variable()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) diff --git a/news/index.html b/news/index.html index 8b238370..97ac28bb 100644 --- a/news/index.html +++ b/news/index.html @@ -38,12 +38,12 @@

Changelog

- Source: NEWS.md + Source: NEWS.md

FreesearchR 26.3.1

-

FIX Include font files for static loading without dependency on Google. Kept webfonts from google as local fonts are not working for now.

+

FIX Include font files for static loading without dependency on Google.

NEW Updated text strings to better reflect environment data availability.

New strings translated.

diff --git a/news/index.md b/news/index.md index 4abf44fa..aa4f83df 100644 --- a/news/index.md +++ b/news/index.md @@ -2,9 +2,8 @@ ## FreesearchR 26.3.1 -*FIX* ~~Include font files for static loading without dependency on -Google.~~ Kept webfonts from google as local fonts are not working for -now. +*FIX* Include font files for static loading without dependency on +Google. *NEW* Updated text strings to better reflect environment data availability. diff --git a/pkgdown.yml b/pkgdown.yml index 2d8ea0fc..429f5112 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: missingness: missingness.html session: session.html visuals: visuals.html -last_built: 2026-03-02T19:58Z +last_built: 2026-02-28T11:24Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/FreesearchR_palette.html b/reference/FreesearchR_palette.html index 30a6f0ef..9d6c1740 100644 --- a/reference/FreesearchR_palette.html +++ b/reference/FreesearchR_palette.html @@ -38,7 +38,7 @@

Use the FreesearchR colors

- Source: R/theme.R + Source: R/theme.R
FreesearchR_palette.Rd
diff --git a/reference/FreesearchR_theme.html b/reference/FreesearchR_theme.html deleted file mode 100644 index bf6e0564..00000000 --- a/reference/FreesearchR_theme.html +++ /dev/null @@ -1,107 +0,0 @@ - -Custom theme based on unity — FreesearchR_theme • FreesearchR - Skip to contents - - -
-
-
-

Custom theme based on unity

- Source: R/theme.R -
FreesearchR_theme.Rd
-
- -
-

Custom theme based on unity

-
- -
-

Usage

- 
FreesearchR_theme(
-  ...,
-  version = 5,
-  primary = FreesearchR_colors("primary"),
-  secondary = FreesearchR_colors("secondary"),
-  bootswatch = "united",
-  base_font = bslib::font_google("Montserrat"),
-  heading_font = bslib::font_google("Public Sans", wght = "700"),
-  code_font = bslib::font_google("Open Sans"),
-  success = FreesearchR_colors("success"),
-  info = FreesearchR_colors("info"),
-  warning = FreesearchR_colors("warning"),
-  danger = FreesearchR_colors("danger")
-)
-
- -
-

Arguments

- - -
...
-

everything passed on to bslib::bs_theme()

- -
-
-

Value

-

theme list

-
- -
-

Examples

- 
if (interactive()) {
-bs_theme_preview(FreesearchR_theme)
-}
-
-
-
-
- - -
-

Site built with pkgdown 2.2.0.

-
- -
-

Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

-
- -
- - - - - - - diff --git a/reference/FreesearchR_theme.md b/reference/FreesearchR_theme.md deleted file mode 100644 index 71d7a56f..00000000 --- a/reference/FreesearchR_theme.md +++ /dev/null @@ -1,40 +0,0 @@ -# Custom theme based on unity - -Custom theme based on unity - -## Usage - -``` r -FreesearchR_theme( - ..., - version = 5, - primary = FreesearchR_colors("primary"), - secondary = FreesearchR_colors("secondary"), - bootswatch = "united", - base_font = bslib::font_google("Montserrat"), - heading_font = bslib::font_google("Public Sans", wght = "700"), - code_font = bslib::font_google("Open Sans"), - success = FreesearchR_colors("success"), - info = FreesearchR_colors("info"), - warning = FreesearchR_colors("warning"), - danger = FreesearchR_colors("danger") -) -``` - -## Arguments - -- ...: - - everything passed on to bslib::bs_theme() - -## Value - -theme list - -## Examples - -``` r -if (interactive()) { -bs_theme_preview(FreesearchR_theme) -} -``` diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html index 53fe787b..0921d683 100644 --- a/reference/add_class_icon.html +++ b/reference/add_class_icon.html @@ -38,7 +38,7 @@

Convert class grid column to icon

- Source: R/data-summary.R + Source: R/data-summary.R
add_class_icon.Rd
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html index 8cfa3a09..004a3a16 100644 --- a/reference/add_sparkline.html +++ b/reference/add_sparkline.html @@ -38,7 +38,7 @@

Add sparkline to datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
add_sparkline.Rd
diff --git a/reference/align_axes.html b/reference/align_axes.html index c74f85ff..22a92516 100644 --- a/reference/align_axes.html +++ b/reference/align_axes.html @@ -38,7 +38,7 @@

Aligns axes between plots

- Source: R/data_plots.R + Source: R/data_plots.R
align_axes.Rd
diff --git a/reference/all_but.html b/reference/all_but.html index 6ddb97c8..3ca74d1d 100644 --- a/reference/all_but.html +++ b/reference/all_but.html @@ -38,7 +38,7 @@

Select all from vector but

- Source: R/data_plots.R + Source: R/data_plots.R
all_but.Rd
diff --git a/reference/append_column.html b/reference/append_column.html index 4de13506..bb26e27a 100644 --- a/reference/append_column.html +++ b/reference/append_column.html @@ -38,7 +38,7 @@

Append a column to a data.frame

- Source: R/helpers.R + Source: R/helpers.R
append_column.Rd
diff --git a/reference/append_list.html b/reference/append_list.html index 4cde3eeb..4e303a80 100644 --- a/reference/append_list.html +++ b/reference/append_list.html @@ -38,7 +38,7 @@

Append list with named index

- Source: R/helpers.R + Source: R/helpers.R
append_list.Rd
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html index 6a830f67..bbc91bc8 100644 --- a/reference/argsstring2list.html +++ b/reference/argsstring2list.html @@ -38,7 +38,7 @@

Convert string of arguments to list of arguments

- Source: R/helpers.R + Source: R/helpers.R
argsstring2list.Rd
diff --git a/reference/baseline_table.html b/reference/baseline_table.html index 70a90ef1..2e2b3d9e 100644 --- a/reference/baseline_table.html +++ b/reference/baseline_table.html @@ -38,7 +38,7 @@

Print a flexible baseline characteristics table

- Source: R/baseline_table.R + Source: R/baseline_table.R
baseline_table.Rd
@@ -84,7 +84,7 @@

Examples

mtcars |> baseline_table()
-

+

 
   
@@ -113,7 +113,7 @@
 
Characteristic
       N = 3211 (3.1%)
    8
 1 (3.1%)
1 Median (Q1, Q3); n (%)
     
mtcars |> baseline_table(fun.args = list(by = "gear"))
-

+

 
   
Characteristic
       3

diff --git a/reference/class_icons.html b/reference/class_icons.html
index e6618a16..3528cf63 100644
--- a/reference/class_icons.html
+++ b/reference/class_icons.html
@@ -38,7 +38,7 @@
 

   

       
Get data class icons

-      Source: R/data-summary.R
+      Source: R/data-summary.R
       
class_icons.Rd

     

 
diff --git a/reference/clean_common_axis.html b/reference/clean_common_axis.html
index 64b66077..f1e50c61 100644
--- a/reference/clean_common_axis.html
+++ b/reference/clean_common_axis.html
@@ -38,7 +38,7 @@
 

   

       
Extract and clean axis ranges

-      Source: R/data_plots.R
+      Source: R/data_plots.R
       
clean_common_axis.Rd

     

 
diff --git a/reference/clean_date.html b/reference/clean_date.html
index dc3a3b01..9e1cb4f2 100644
--- a/reference/clean_date.html
+++ b/reference/clean_date.html
@@ -38,7 +38,7 @@
 

   

       
Attempts at applying uniform date format

-      Source: R/update-variables-ext.R
+      Source: R/update-variables-ext.R
       
clean_date.Rd

     

 
diff --git a/reference/clean_sep.html b/reference/clean_sep.html
index ccffcc4b..cf41894f 100644
--- a/reference/clean_sep.html
+++ b/reference/clean_sep.html
@@ -38,7 +38,7 @@
 

   

       
gsub wrapper for piping with default values for separator substituting

-      Source: R/update-variables-ext.R
+      Source: R/update-variables-ext.R
       
clean_sep.Rd

     

 
diff --git a/reference/collapse_spaces.html b/reference/collapse_spaces.html
index e1052d8a..230d2eb0 100644
--- a/reference/collapse_spaces.html
+++ b/reference/collapse_spaces.html
@@ -40,7 +40,7 @@ but it works">
   

       
Substitue spaces/tabs with single space excluding text within quotes

-      Source: R/helpers.R
+      Source: R/helpers.R
       
collapse_spaces.Rd

     

 
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html
index 20adf9a5..13d69bf7 100644
--- a/reference/columnSelectInput.html
+++ b/reference/columnSelectInput.html
@@ -40,7 +40,7 @@ Adds the option to select "none" which is handled later'>
   

       
A selectizeInput customized for data frames with column labels

-      Source: R/custom_SelectInput.R
+      Source: R/custom_SelectInput.R
       
columnSelectInput.Rd

     

 
diff --git a/reference/compare_missings.html b/reference/compare_missings.html
index fb2f29a8..2e4d8de8 100644
--- a/reference/compare_missings.html
+++ b/reference/compare_missings.html
@@ -38,7 +38,7 @@
 

   

       
Pairwise comparison of missings across covariables

-      Source: R/missings-module.R
+      Source: R/missings-module.R
       
compare_missings.Rd

     

 
diff --git a/reference/contrast_text.html b/reference/contrast_text.html
index 76ab9d23..ee928f68 100644
--- a/reference/contrast_text.html
+++ b/reference/contrast_text.html
@@ -40,7 +40,7 @@ background color.">
   

       
Contrast Text Color

-      Source: R/contrast_text.R
+      Source: R/contrast_text.R
       
contrast_text.Rd

     

 
diff --git a/reference/corr_pairs_validate.html b/reference/corr_pairs_validate.html
index 040995c7..77377271 100644
--- a/reference/corr_pairs_validate.html
+++ b/reference/corr_pairs_validate.html
@@ -38,7 +38,7 @@
 

   

       
Correlation pairs validation

-      Source: R/validation.R
+      Source: R/validation.R
       
corr_pairs_validate.Rd

     

 
diff --git a/reference/correlation_pairs.html b/reference/correlation_pairs.html
index 01efa738..0a162bfa 100644
--- a/reference/correlation_pairs.html
+++ b/reference/correlation_pairs.html
@@ -38,7 +38,7 @@
 

   

       
Determine significant correlations in the data set

-      Source: R/correlations-module.R
+      Source: R/correlations-module.R
       
correlation_pairs.Rd

     

 
diff --git a/reference/create-column.html b/reference/create-column.html
index df471d5a..8239e14c 100644
--- a/reference/create-column.html
+++ b/reference/create-column.html
@@ -38,7 +38,7 @@
 

   

       
Create new column

-      Source: R/create-column-mod.R
+      Source: R/create-column-mod.R
       
create-column.Rd

     

 
diff --git a/reference/create_baseline.html b/reference/create_baseline.html
index e3765aa5..87e74f39 100644
--- a/reference/create_baseline.html
+++ b/reference/create_baseline.html
@@ -38,7 +38,7 @@
 

   

       
Create a baseline table

-      Source: R/baseline_table.R
+      Source: R/baseline_table.R
       
create_baseline.Rd

     

 
@@ -100,7 +100,7 @@
     

     
Examples

     
mtcars |> create_baseline(by.var = "gear", add.p = "yes" == "yes")
-

+

 
   
Characteristic
       3

@@ -188,7 +188,7 @@ N = 5		
 1 (20)
 
1 Kruskal-Wallis rank sum test; Fisher’s exact test
     
mtcars |> create_baseline(by.var = "gear", detail_level = "extended")
-

+

 
   
Characteristic
       3

@@ -321,7 +321,7 @@ N = 5		
 0 (0)
 0 (0)
 1 (20)
mtcars |> create_baseline(by.var = "gear", detail_level = "extended",type = list(gtsummary::all_dichotomous() ~ "categorical"),theme="nejm")
-

+

 
   
Characteristic
       3

@@ -402,7 +402,7 @@ N = 51 (20)
1 Median (IQR); n (%)
     

 create_baseline(default_parsing(mtcars), by.var = "am", add.p = FALSE, add.overall = FALSE, theme = "lancet")
-

+

 
   
Characteristic
       FALSE

diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html
index 999a81d9..f73a9480 100644
--- a/reference/create_log_tics.html
+++ b/reference/create_log_tics.html
@@ -38,7 +38,7 @@
 

   

       
Create summetric log ticks

-      Source: R/regression_plot.R
+      Source: R/regression_plot.R
       
create_log_tics.Rd

     

 
@@ -67,7 +67,7 @@
     

     
Examples

     
c(sample(seq(.1, 1, .1), 3), sample(1:10, 3)) |> create_log_tics()
-#>  [1]  0.10  0.12  0.20  0.25  0.50  1.00  2.00  4.00  5.00  8.00 10.00
+#>  [1]  0.10  0.20  0.30  0.50  0.90  1.00  1.11  2.00  3.33  5.00 10.00