diff --git a/404.html b/404.html
index f1199b6e..5e61c8ba 100644
--- a/404.html
+++ b/404.html
@@ -30,7 +30,7 @@
 
     <a class="navbar-brand me-2" href="https://agdamsbo.github.io/FreesearchR/index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 4e584236..be7f7319 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/LICENSE.html b/LICENSE.html
index 3e952f66..c3ca36af 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/QA.html b/QA.html
index bb79d244..3e2a2246 100644
--- a/QA.html
+++ b/QA.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/ROADMAP.html b/ROADMAP.html
index e3e2cdce..f0b690af 100644
--- a/ROADMAP.html
+++ b/ROADMAP.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/SESSION.html b/SESSION.html
index b3b57a16..4b220ba7 100644
--- a/SESSION.html
+++ b/SESSION.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -43,7 +43,7 @@
 
 
 <table class="table"><colgroup><col width="100%"></colgroup><thead><tr class="header"><th>——————————– R environment ———————————</th>
-</tr></thead><tbody><tr class="odd"><td>|setting |value | |:———–|:———————————————-| |version |R version 4.4.1 (2024-06-14) | |os |macOS 26.1 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2025-12-11 | |rstudio |2025.09.2+418 Cucumberleaf Sunflower (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |25.12.5.251211 |</td>
+</tr></thead><tbody><tr class="odd"><td>|setting |value | |:———–|:———————————————-| |version |R version 4.4.1 (2024-06-14) | |os |macOS 26.1 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2025-12-11 | |rstudio |2025.09.2+418 Cucumberleaf Sunflower (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |25.12.3.251211 |</td>
 </tr></tbody></table><div class="section level2">
 <h2 id="id_-packages-">———————————– packages ———————————–<a class="anchor" aria-label="anchor" href="#id_-packages-"></a></h2>
 <table class="table"><thead><tr class="header"><th align="left">package</th>
@@ -291,7 +291,7 @@
 <td align="left">2023-02-24</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr><tr class="odd"><td align="left">FreesearchR</td>
-<td align="left">25.12.5</td>
+<td align="left">25.12.3</td>
 <td align="left">NA</td>
 <td align="left">NA</td>
 </tr><tr class="even"><td align="left">fs</td>
@@ -414,350 +414,374 @@
 <td align="left">1.50</td>
 <td align="left">2025-03-16</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">later</td>
+</tr><tr class="even"><td align="left">labeling</td>
+<td align="left">0.4.3</td>
+<td align="left">2023-08-29</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="odd"><td align="left">later</td>
 <td align="left">1.4.4</td>
 <td align="left">2025-08-27</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">lattice</td>
+</tr><tr class="even"><td align="left">lattice</td>
 <td align="left">0.22-7</td>
 <td align="left">2025-04-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">lifecycle</td>
+</tr><tr class="odd"><td align="left">lifecycle</td>
 <td align="left">1.0.4</td>
 <td align="left">2023-11-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">litedown</td>
+</tr><tr class="even"><td align="left">litedown</td>
 <td align="left">0.8</td>
 <td align="left">2025-11-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">lme4</td>
+</tr><tr class="odd"><td align="left">lme4</td>
 <td align="left">1.1-38</td>
 <td align="left">2025-12-02</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="odd"><td align="left">lubridate</td>
+</tr><tr class="even"><td align="left">lubridate</td>
 <td align="left">1.9.4</td>
 <td align="left">2024-12-08</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">magrittr</td>
+</tr><tr class="odd"><td align="left">magrittr</td>
 <td align="left">2.0.4</td>
 <td align="left">2025-09-12</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">markdown</td>
+</tr><tr class="even"><td align="left">markdown</td>
 <td align="left">2.0</td>
 <td align="left">2025-03-23</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">MASS</td>
+</tr><tr class="odd"><td align="left">MASS</td>
 <td align="left">7.3-65</td>
 <td align="left">2025-02-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">Matrix</td>
+</tr><tr class="even"><td align="left">Matrix</td>
 <td align="left">1.7-4</td>
 <td align="left">2025-08-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">memoise</td>
+</tr><tr class="odd"><td align="left">memoise</td>
 <td align="left">2.0.1</td>
 <td align="left">2021-11-26</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="odd"><td align="left">mime</td>
+</tr><tr class="even"><td align="left">mime</td>
 <td align="left">0.13</td>
 <td align="left">2025-03-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">minqa</td>
+</tr><tr class="odd"><td align="left">minqa</td>
 <td align="left">1.2.8</td>
 <td align="left">2024-08-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">mvtnorm</td>
+</tr><tr class="even"><td align="left">mvtnorm</td>
 <td align="left">1.3-3</td>
 <td align="left">2025-01-10</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">NHANES</td>
+</tr><tr class="odd"><td align="left">NHANES</td>
 <td align="left">2.1.0</td>
 <td align="left">2015-07-02</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="odd"><td align="left">nlme</td>
+</tr><tr class="even"><td align="left">nlme</td>
 <td align="left">3.1-168</td>
 <td align="left">2025-03-31</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">nloptr</td>
+</tr><tr class="odd"><td align="left">nloptr</td>
 <td align="left">2.2.1</td>
 <td align="left">2025-03-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">nnet</td>
+</tr><tr class="even"><td align="left">nnet</td>
 <td align="left">7.3-20</td>
 <td align="left">2025-01-01</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">officer</td>
+</tr><tr class="odd"><td align="left">officer</td>
 <td align="left">0.7.2</td>
 <td align="left">2025-12-04</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="odd"><td align="left">opdisDownsampling</td>
+</tr><tr class="even"><td align="left">opdisDownsampling</td>
 <td align="left">1.0.1</td>
 <td align="left">2024-04-15</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="even"><td align="left">openssl</td>
+</tr><tr class="odd"><td align="left">openssl</td>
 <td align="left">2.3.4</td>
 <td align="left">2025-09-30</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">openxlsx2</td>
+</tr><tr class="even"><td align="left">openxlsx2</td>
 <td align="left">1.22</td>
 <td align="left">2025-12-07</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">otel</td>
+</tr><tr class="odd"><td align="left">otel</td>
 <td align="left">0.2.0</td>
 <td align="left">2025-08-29</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">parameters</td>
+</tr><tr class="even"><td align="left">parameters</td>
 <td align="left">0.28.3</td>
 <td align="left">2025-11-25</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">patchwork</td>
+</tr><tr class="odd"><td align="left">patchwork</td>
 <td align="left">1.3.2</td>
 <td align="left">2025-08-25</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">pbmcapply</td>
+</tr><tr class="even"><td align="left">pbmcapply</td>
 <td align="left">1.5.1</td>
 <td align="left">2022-04-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">performance</td>
+</tr><tr class="odd"><td align="left">performance</td>
 <td align="left">0.15.3</td>
 <td align="left">2025-12-01</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="odd"><td align="left">phosphoricons</td>
+</tr><tr class="even"><td align="left">phosphoricons</td>
 <td align="left">0.2.1</td>
 <td align="left">2024-04-08</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="even"><td align="left">pillar</td>
+</tr><tr class="odd"><td align="left">pillar</td>
 <td align="left">1.11.1</td>
 <td align="left">2025-09-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">pkgbuild</td>
+</tr><tr class="even"><td align="left">pkgbuild</td>
 <td align="left">1.4.8</td>
 <td align="left">2025-05-26</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">pkgconfig</td>
+</tr><tr class="odd"><td align="left">pkgconfig</td>
 <td align="left">2.0.3</td>
 <td align="left">2019-09-22</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">pkgload</td>
+</tr><tr class="even"><td align="left">pkgload</td>
 <td align="left">1.4.1</td>
 <td align="left">2025-09-23</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">plyr</td>
+</tr><tr class="odd"><td align="left">plyr</td>
 <td align="left">1.8.9</td>
 <td align="left">2023-10-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">polyclip</td>
+</tr><tr class="even"><td align="left">polyclip</td>
 <td align="left">1.10-7</td>
 <td align="left">2024-07-23</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">pracma</td>
+</tr><tr class="odd"><td align="left">pracma</td>
 <td align="left">2.4.6</td>
 <td align="left">2025-10-22</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">processx</td>
+</tr><tr class="even"><td align="left">processx</td>
 <td align="left">3.8.6</td>
 <td align="left">2025-02-21</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">promises</td>
+</tr><tr class="odd"><td align="left">promises</td>
 <td align="left">1.5.0</td>
 <td align="left">2025-11-01</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">proxy</td>
+</tr><tr class="even"><td align="left">proxy</td>
 <td align="left">0.4-27</td>
 <td align="left">2022-06-09</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">ps</td>
+</tr><tr class="odd"><td align="left">ps</td>
 <td align="left">1.9.1</td>
 <td align="left">2025-04-12</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">purrr</td>
+</tr><tr class="even"><td align="left">purrr</td>
 <td align="left">1.2.0</td>
 <td align="left">2025-11-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">qqconf</td>
+</tr><tr class="odd"><td align="left">qqconf</td>
 <td align="left">1.3.2</td>
 <td align="left">2023-04-14</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="odd"><td align="left">qqplotr</td>
+</tr><tr class="even"><td align="left">qqplotr</td>
 <td align="left">0.0.7</td>
 <td align="left">2025-09-05</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">quarto</td>
+</tr><tr class="odd"><td align="left">quarto</td>
 <td align="left">1.5.1</td>
 <td align="left">2025-09-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">R6</td>
+</tr><tr class="even"><td align="left">R.cache</td>
+<td align="left">0.17.0</td>
+<td align="left">2025-05-02</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="odd"><td align="left">R.methodsS3</td>
+<td align="left">1.8.2</td>
+<td align="left">2022-06-13</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="even"><td align="left">R.oo</td>
+<td align="left">1.27.1</td>
+<td align="left">2025-05-02</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="odd"><td align="left">R.utils</td>
+<td align="left">2.13.0</td>
+<td align="left">2025-02-24</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="even"><td align="left">R6</td>
 <td align="left">2.6.1</td>
 <td align="left">2025-02-15</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">ragg</td>
+</tr><tr class="odd"><td align="left">ragg</td>
 <td align="left">1.5.0</td>
 <td align="left">2025-09-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">rankinPlot</td>
+</tr><tr class="even"><td align="left">rankinPlot</td>
 <td align="left">1.1.0</td>
 <td align="left">2023-01-30</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="even"><td align="left">rbibutils</td>
+</tr><tr class="odd"><td align="left">rbibutils</td>
 <td align="left">2.4</td>
 <td align="left">2025-11-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">RColorBrewer</td>
+</tr><tr class="even"><td align="left">RColorBrewer</td>
 <td align="left">1.1-3</td>
 <td align="left">2022-04-03</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">Rcpp</td>
+</tr><tr class="odd"><td align="left">Rcpp</td>
 <td align="left">1.1.0</td>
 <td align="left">2025-07-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">RcppArmadillo</td>
+</tr><tr class="even"><td align="left">RcppArmadillo</td>
 <td align="left">15.2.2-1</td>
 <td align="left">2025-11-22</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">Rdpack</td>
+</tr><tr class="odd"><td align="left">Rdpack</td>
 <td align="left">2.6.4</td>
 <td align="left">2025-04-09</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">reactable</td>
+</tr><tr class="even"><td align="left">reactable</td>
 <td align="left">0.4.5</td>
 <td align="left">2025-12-01</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">readODS</td>
+</tr><tr class="odd"><td align="left">readODS</td>
 <td align="left">2.3.2</td>
 <td align="left">2025-01-13</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">readr</td>
+</tr><tr class="even"><td align="left">readr</td>
 <td align="left">2.1.6</td>
 <td align="left">2025-11-14</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">readxl</td>
+</tr><tr class="odd"><td align="left">readxl</td>
 <td align="left">1.4.5</td>
 <td align="left">2025-03-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">REDCapCAST</td>
+</tr><tr class="even"><td align="left">REDCapCAST</td>
 <td align="left">25.3.2</td>
 <td align="left">2025-03-10</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">REDCapR</td>
+</tr><tr class="odd"><td align="left">REDCapR</td>
 <td align="left">1.6.0</td>
 <td align="left">2025-10-08</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">reformulas</td>
+</tr><tr class="even"><td align="left">reformulas</td>
 <td align="left">0.4.2</td>
 <td align="left">2025-10-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">remotes</td>
+</tr><tr class="odd"><td align="left">remotes</td>
 <td align="left">2.5.0</td>
 <td align="left">2024-03-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">rempsyc</td>
+</tr><tr class="even"><td align="left">rempsyc</td>
 <td align="left">0.2.0</td>
 <td align="left">2025-09-15</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">renv</td>
+</tr><tr class="odd"><td align="left">renv</td>
 <td align="left">1.1.5</td>
 <td align="left">2025-07-24</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">reshape2</td>
+</tr><tr class="even"><td align="left">reshape2</td>
 <td align="left">1.4.5</td>
 <td align="left">2025-11-12</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">rio</td>
+</tr><tr class="odd"><td align="left">rio</td>
 <td align="left">1.2.4</td>
 <td align="left">2025-09-26</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">rlang</td>
+</tr><tr class="even"><td align="left">rlang</td>
 <td align="left">1.1.6</td>
 <td align="left">2025-04-11</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">rmarkdown</td>
+</tr><tr class="odd"><td align="left">rmarkdown</td>
 <td align="left">2.30</td>
 <td align="left">2025-09-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">robustbase</td>
+</tr><tr class="even"><td align="left">robustbase</td>
 <td align="left">0.99-6</td>
 <td align="left">2025-09-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">roxygen2</td>
+</tr><tr class="odd"><td align="left">roxygen2</td>
 <td align="left">7.3.3</td>
 <td align="left">2025-09-03</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">rpart</td>
+</tr><tr class="even"><td align="left">rpart</td>
 <td align="left">4.1.24</td>
 <td align="left">2025-01-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">rprojroot</td>
+</tr><tr class="odd"><td align="left">rprojroot</td>
 <td align="left">2.1.1</td>
 <td align="left">2025-08-26</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">rsconnect</td>
+</tr><tr class="even"><td align="left">rsconnect</td>
 <td align="left">1.7.0</td>
 <td align="left">2025-12-06</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">rstudioapi</td>
+</tr><tr class="odd"><td align="left">rstudioapi</td>
 <td align="left">0.17.1</td>
 <td align="left">2024-10-22</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">S7</td>
+</tr><tr class="even"><td align="left">S7</td>
 <td align="left">0.2.1</td>
 <td align="left">2025-11-14</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">sass</td>
+</tr><tr class="odd"><td align="left">sass</td>
 <td align="left">0.4.10</td>
 <td align="left">2025-04-11</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">scales</td>
+</tr><tr class="even"><td align="left">scales</td>
 <td align="left">1.4.0</td>
 <td align="left">2025-04-24</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">see</td>
+</tr><tr class="odd"><td align="left">see</td>
 <td align="left">0.12.0</td>
 <td align="left">2025-09-14</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">sessioninfo</td>
+</tr><tr class="even"><td align="left">sessioninfo</td>
 <td align="left">1.2.3</td>
 <td align="left">2025-02-05</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">shiny</td>
+</tr><tr class="odd"><td align="left">shiny</td>
 <td align="left">1.12.1</td>
 <td align="left">2025-12-09</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">shiny.i18n</td>
+</tr><tr class="even"><td align="left">shiny.i18n</td>
 <td align="left">0.3.0</td>
 <td align="left">2023-01-16</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="even"><td align="left">shinybusy</td>
+</tr><tr class="odd"><td align="left">shinybusy</td>
 <td align="left">0.3.3</td>
 <td align="left">2024-03-09</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="odd"><td align="left">shinyjs</td>
+</tr><tr class="even"><td align="left">shinyjs</td>
 <td align="left">2.1.0</td>
 <td align="left">2021-12-23</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="even"><td align="left">shinyTime</td>
+</tr><tr class="odd"><td align="left">shinyTime</td>
 <td align="left">1.0.3</td>
 <td align="left">2022-08-19</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="odd"><td align="left">shinyWidgets</td>
+</tr><tr class="even"><td align="left">shinyWidgets</td>
 <td align="left">0.9.0</td>
 <td align="left">2025-02-21</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">smd</td>
-<td align="left">0.8.0</td>
-<td align="left">2025-02-12</td>
+</tr><tr class="odd"><td align="left">sourcetools</td>
+<td align="left">0.1.7-1</td>
+<td align="left">2023-02-01</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">stringi</td>
+</tr><tr class="even"><td align="left">stringi</td>
 <td align="left">1.8.7</td>
 <td align="left">2025-03-27</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">stringr</td>
+</tr><tr class="odd"><td align="left">stringr</td>
 <td align="left">1.6.0</td>
 <td align="left">2025-11-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">stRoke</td>
+</tr><tr class="even"><td align="left">stRoke</td>
 <td align="left">25.9.2</td>
 <td align="left">2025-09-30</td>
 <td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="odd"><td align="left">styler</td>
+<td align="left">1.11.0</td>
+<td align="left">2025-10-13</td>
+<td align="left">CRAN (R 4.4.1)</td>
 </tr><tr class="even"><td align="left">systemfonts</td>
 <td align="left">1.3.1</td>
 <td align="left">2025-10-01</td>
@@ -810,51 +834,47 @@
 <td align="left">3.2.1</td>
 <td align="left">2025-09-06</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">uuid</td>
+</tr><tr class="odd"><td align="left">utf8</td>
+<td align="left">1.2.6</td>
+<td align="left">2025-06-08</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr><tr class="even"><td align="left">uuid</td>
 <td align="left">1.2-1</td>
 <td align="left">2024-07-29</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">vctrs</td>
+</tr><tr class="odd"><td align="left">vctrs</td>
 <td align="left">0.6.5</td>
 <td align="left">2023-12-01</td>
 <td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="odd"><td align="left">viridis</td>
-<td align="left">0.6.5</td>
-<td align="left">2024-01-29</td>
-<td align="left">CRAN (R 4.4.0)</td>
-</tr><tr class="even"><td align="left">viridisLite</td>
-<td align="left">0.4.2</td>
-<td align="left">2023-05-02</td>
-<td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">vroom</td>
+</tr><tr class="even"><td align="left">vroom</td>
 <td align="left">1.6.7</td>
 <td align="left">2025-11-28</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">withr</td>
+</tr><tr class="odd"><td align="left">withr</td>
 <td align="left">3.0.2</td>
 <td align="left">2024-10-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">writexl</td>
+</tr><tr class="even"><td align="left">writexl</td>
 <td align="left">1.5.4</td>
 <td align="left">2025-04-15</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="even"><td align="left">xfun</td>
+</tr><tr class="odd"><td align="left">xfun</td>
 <td align="left">0.54</td>
 <td align="left">2025-10-30</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">xml2</td>
+</tr><tr class="even"><td align="left">xml2</td>
 <td align="left">1.5.1</td>
 <td align="left">2025-12-01</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">xtable</td>
+</tr><tr class="odd"><td align="left">xtable</td>
 <td align="left">1.8-4</td>
 <td align="left">2019-04-21</td>
 <td align="left">CRAN (R 4.4.1)</td>
-</tr><tr class="odd"><td align="left">yaml</td>
+</tr><tr class="even"><td align="left">yaml</td>
 <td align="left">2.3.11</td>
 <td align="left">2025-11-28</td>
 <td align="left">CRAN (R 4.4.3)</td>
-</tr><tr class="even"><td align="left">zip</td>
+</tr><tr class="odd"><td align="left">zip</td>
 <td align="left">2.3.3</td>
 <td align="left">2025-05-13</td>
 <td align="left">CRAN (R 4.4.1)</td>
diff --git a/SESSION.md b/SESSION.md
index 89f15f83..984cb502 100644
--- a/SESSION.md
+++ b/SESSION.md
@@ -2,7 +2,7 @@
 
 | ——————————– R environment ———————————                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |
 |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| \|setting \|value \| \|:———–\|:———————————————-\| \|version \|R version 4.4.1 (2024-06-14) \| \|os \|macOS 26.1 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2025-12-11 \| \|rstudio \|2025.09.2+418 Cucumberleaf Sunflower (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|25.12.5.251211 \| |
+| \|setting \|value \| \|:———–\|:———————————————-\| \|version \|R version 4.4.1 (2024-06-14) \| \|os \|macOS 26.1 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2025-12-11 \| \|rstudio \|2025.09.2+418 Cucumberleaf Sunflower (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|25.12.3.251211 \| |
 
 ## ———————————– packages ———————————–
 
@@ -68,7 +68,7 @@
 | foreach           | 1.5.2         | 2022-02-02 | CRAN (R 4.4.0) |
 | foreign           | 0.8-90        | 2025-03-31 | CRAN (R 4.4.1) |
 | Formula           | 1.2-5         | 2023-02-24 | CRAN (R 4.4.1) |
-| FreesearchR       | 25.12.5       | NA         | NA             |
+| FreesearchR       | 25.12.3       | NA         | NA             |
 | fs                | 1.6.6         | 2025-04-12 | CRAN (R 4.4.1) |
 | gdtools           | 0.4.4         | 2025-10-06 | CRAN (R 4.4.1) |
 | generics          | 0.1.4         | 2025-05-09 | CRAN (R 4.4.1) |
@@ -99,6 +99,7 @@
 | KernSmooth        | 2.23-26       | 2025-01-01 | CRAN (R 4.4.1) |
 | keyring           | 1.4.1         | 2025-06-15 | CRAN (R 4.4.1) |
 | knitr             | 1.50          | 2025-03-16 | CRAN (R 4.4.1) |
+| labeling          | 0.4.3         | 2023-08-29 | CRAN (R 4.4.1) |
 | later             | 1.4.4         | 2025-08-27 | CRAN (R 4.4.1) |
 | lattice           | 0.22-7        | 2025-04-02 | CRAN (R 4.4.1) |
 | lifecycle         | 1.0.4         | 2023-11-07 | CRAN (R 4.4.1) |
@@ -142,6 +143,10 @@
 | qqconf            | 1.3.2         | 2023-04-14 | CRAN (R 4.4.0) |
 | qqplotr           | 0.0.7         | 2025-09-05 | CRAN (R 4.4.1) |
 | quarto            | 1.5.1         | 2025-09-04 | CRAN (R 4.4.1) |
+| R.cache           | 0.17.0        | 2025-05-02 | CRAN (R 4.4.1) |
+| R.methodsS3       | 1.8.2         | 2022-06-13 | CRAN (R 4.4.1) |
+| R.oo              | 1.27.1        | 2025-05-02 | CRAN (R 4.4.1) |
+| R.utils           | 2.13.0        | 2025-02-24 | CRAN (R 4.4.1) |
 | R6                | 2.6.1         | 2025-02-15 | CRAN (R 4.4.1) |
 | ragg              | 1.5.0         | 2025-09-02 | CRAN (R 4.4.1) |
 | rankinPlot        | 1.1.0         | 2023-01-30 | CRAN (R 4.4.0) |
@@ -181,10 +186,11 @@
 | shinyjs           | 2.1.0         | 2021-12-23 | CRAN (R 4.4.0) |
 | shinyTime         | 1.0.3         | 2022-08-19 | CRAN (R 4.4.0) |
 | shinyWidgets      | 0.9.0         | 2025-02-21 | CRAN (R 4.4.1) |
-| smd               | 0.8.0         | 2025-02-12 | CRAN (R 4.4.1) |
+| sourcetools       | 0.1.7-1       | 2023-02-01 | CRAN (R 4.4.1) |
 | stringi           | 1.8.7         | 2025-03-27 | CRAN (R 4.4.1) |
 | stringr           | 1.6.0         | 2025-11-04 | CRAN (R 4.4.1) |
 | stRoke            | 25.9.2        | 2025-09-30 | CRAN (R 4.4.1) |
+| styler            | 1.11.0        | 2025-10-13 | CRAN (R 4.4.1) |
 | systemfonts       | 1.3.1         | 2025-10-01 | CRAN (R 4.4.1) |
 | testthat          | 3.3.1         | 2025-11-25 | CRAN (R 4.4.3) |
 | textshaping       | 1.0.4         | 2025-10-10 | CRAN (R 4.4.1) |
@@ -198,10 +204,9 @@
 | twosamples        | 2.0.1         | 2023-06-23 | CRAN (R 4.4.1) |
 | tzdb              | 0.5.0         | 2025-03-15 | CRAN (R 4.4.1) |
 | usethis           | 3.2.1         | 2025-09-06 | CRAN (R 4.4.1) |
+| utf8              | 1.2.6         | 2025-06-08 | CRAN (R 4.4.1) |
 | uuid              | 1.2-1         | 2024-07-29 | CRAN (R 4.4.1) |
 | vctrs             | 0.6.5         | 2023-12-01 | CRAN (R 4.4.0) |
-| viridis           | 0.6.5         | 2024-01-29 | CRAN (R 4.4.0) |
-| viridisLite       | 0.4.2         | 2023-05-02 | CRAN (R 4.4.1) |
 | vroom             | 1.6.7         | 2025-11-28 | CRAN (R 4.4.3) |
 | withr             | 3.0.2         | 2024-10-28 | CRAN (R 4.4.1) |
 | writexl           | 1.5.4         | 2025-04-15 | CRAN (R 4.4.1) |
diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html
index a2b4f7ff..01d4f990 100644
--- a/articles/FreesearchR.html
+++ b/articles/FreesearchR.html
@@ -29,7 +29,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/data-types.html b/articles/data-types.html
index 5dbedab8..59025b54 100644
--- a/articles/data-types.html
+++ b/articles/data-types.html
@@ -29,7 +29,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/index.html b/articles/index.html
index 570ade00..f11c52f5 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/missingness.html b/articles/missingness.html
index b106c577..0485ac26 100644
--- a/articles/missingness.html
+++ b/articles/missingness.html
@@ -29,7 +29,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/session.html b/articles/session.html
index e5775cba..7e346e6d 100644
--- a/articles/session.html
+++ b/articles/session.html
@@ -29,7 +29,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -149,7 +149,7 @@ packages and the latest build info.</p>
 </tr>
 <tr class="odd">
 <td align="left">FreesearchR</td>
-<td align="left">25.12.5.251211</td>
+<td align="left">25.12.3.251211</td>
 </tr>
 </tbody>
 </table>
@@ -529,7 +529,7 @@ packages and the latest build info.</p>
 </tr>
 <tr class="odd">
 <td align="left">FreesearchR</td>
-<td align="left">25.12.5</td>
+<td align="left">25.12.3</td>
 <td align="left">NA</td>
 <td align="left">NA</td>
 </tr>
@@ -714,521 +714,557 @@ packages and the latest build info.</p>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
 <tr class="even">
+<td align="left">labeling</td>
+<td align="left">0.4.3</td>
+<td align="left">2023-08-29</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
+<tr class="odd">
 <td align="left">later</td>
 <td align="left">1.4.4</td>
 <td align="left">2025-08-27</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">lattice</td>
 <td align="left">0.22-7</td>
 <td align="left">2025-04-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">lifecycle</td>
 <td align="left">1.0.4</td>
 <td align="left">2023-11-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">litedown</td>
 <td align="left">0.8</td>
 <td align="left">2025-11-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">lme4</td>
 <td align="left">1.1-38</td>
 <td align="left">2025-12-02</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">lubridate</td>
 <td align="left">1.9.4</td>
 <td align="left">2024-12-08</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">magrittr</td>
 <td align="left">2.0.4</td>
 <td align="left">2025-09-12</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">markdown</td>
 <td align="left">2.0</td>
 <td align="left">2025-03-23</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">MASS</td>
 <td align="left">7.3-65</td>
 <td align="left">2025-02-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">Matrix</td>
 <td align="left">1.7-4</td>
 <td align="left">2025-08-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">memoise</td>
 <td align="left">2.0.1</td>
 <td align="left">2021-11-26</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">mime</td>
 <td align="left">0.13</td>
 <td align="left">2025-03-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">minqa</td>
 <td align="left">1.2.8</td>
 <td align="left">2024-08-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">mvtnorm</td>
 <td align="left">1.3-3</td>
 <td align="left">2025-01-10</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">NHANES</td>
 <td align="left">2.1.0</td>
 <td align="left">2015-07-02</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">nlme</td>
 <td align="left">3.1-168</td>
 <td align="left">2025-03-31</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">nloptr</td>
 <td align="left">2.2.1</td>
 <td align="left">2025-03-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">nnet</td>
 <td align="left">7.3-20</td>
 <td align="left">2025-01-01</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">officer</td>
 <td align="left">0.7.2</td>
 <td align="left">2025-12-04</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">opdisDownsampling</td>
 <td align="left">1.0.1</td>
 <td align="left">2024-04-15</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">openssl</td>
 <td align="left">2.3.4</td>
 <td align="left">2025-09-30</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">openxlsx2</td>
 <td align="left">1.22</td>
 <td align="left">2025-12-07</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">otel</td>
 <td align="left">0.2.0</td>
 <td align="left">2025-08-29</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">parameters</td>
 <td align="left">0.28.3</td>
 <td align="left">2025-11-25</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">patchwork</td>
 <td align="left">1.3.2</td>
 <td align="left">2025-08-25</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">pbmcapply</td>
 <td align="left">1.5.1</td>
 <td align="left">2022-04-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">performance</td>
 <td align="left">0.15.3</td>
 <td align="left">2025-12-01</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">phosphoricons</td>
 <td align="left">0.2.1</td>
 <td align="left">2024-04-08</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">pillar</td>
 <td align="left">1.11.1</td>
 <td align="left">2025-09-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">pkgbuild</td>
 <td align="left">1.4.8</td>
 <td align="left">2025-05-26</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">pkgconfig</td>
 <td align="left">2.0.3</td>
 <td align="left">2019-09-22</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">pkgload</td>
 <td align="left">1.4.1</td>
 <td align="left">2025-09-23</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">plyr</td>
 <td align="left">1.8.9</td>
 <td align="left">2023-10-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">polyclip</td>
 <td align="left">1.10-7</td>
 <td align="left">2024-07-23</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">pracma</td>
 <td align="left">2.4.6</td>
 <td align="left">2025-10-22</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">processx</td>
 <td align="left">3.8.6</td>
 <td align="left">2025-02-21</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">promises</td>
 <td align="left">1.5.0</td>
 <td align="left">2025-11-01</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">proxy</td>
 <td align="left">0.4-27</td>
 <td align="left">2022-06-09</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">ps</td>
 <td align="left">1.9.1</td>
 <td align="left">2025-04-12</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">purrr</td>
 <td align="left">1.2.0</td>
 <td align="left">2025-11-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">qqconf</td>
 <td align="left">1.3.2</td>
 <td align="left">2023-04-14</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">qqplotr</td>
 <td align="left">0.0.7</td>
 <td align="left">2025-09-05</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">quarto</td>
 <td align="left">1.5.1</td>
 <td align="left">2025-09-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
+<tr class="even">
+<td align="left">R.cache</td>
+<td align="left">0.17.0</td>
+<td align="left">2025-05-02</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
 <tr class="odd">
+<td align="left">R.methodsS3</td>
+<td align="left">1.8.2</td>
+<td align="left">2022-06-13</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
+<tr class="even">
+<td align="left">R.oo</td>
+<td align="left">1.27.1</td>
+<td align="left">2025-05-02</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
+<tr class="odd">
+<td align="left">R.utils</td>
+<td align="left">2.13.0</td>
+<td align="left">2025-02-24</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
+<tr class="even">
 <td align="left">R6</td>
 <td align="left">2.6.1</td>
 <td align="left">2025-02-15</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">ragg</td>
 <td align="left">1.5.0</td>
 <td align="left">2025-09-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">rankinPlot</td>
 <td align="left">1.1.0</td>
 <td align="left">2023-01-30</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">rbibutils</td>
 <td align="left">2.4</td>
 <td align="left">2025-11-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">RColorBrewer</td>
 <td align="left">1.1-3</td>
 <td align="left">2022-04-03</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">Rcpp</td>
 <td align="left">1.1.0</td>
 <td align="left">2025-07-02</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">RcppArmadillo</td>
 <td align="left">15.2.2-1</td>
 <td align="left">2025-11-22</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">Rdpack</td>
 <td align="left">2.6.4</td>
 <td align="left">2025-04-09</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">reactable</td>
 <td align="left">0.4.5</td>
 <td align="left">2025-12-01</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">readODS</td>
 <td align="left">2.3.2</td>
 <td align="left">2025-01-13</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">readr</td>
 <td align="left">2.1.6</td>
 <td align="left">2025-11-14</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">readxl</td>
 <td align="left">1.4.5</td>
 <td align="left">2025-03-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">REDCapCAST</td>
 <td align="left">25.3.2</td>
 <td align="left">2025-03-10</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">REDCapR</td>
 <td align="left">1.6.0</td>
 <td align="left">2025-10-08</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">reformulas</td>
 <td align="left">0.4.2</td>
 <td align="left">2025-10-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">remotes</td>
 <td align="left">2.5.0</td>
 <td align="left">2024-03-17</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">rempsyc</td>
 <td align="left">0.2.0</td>
 <td align="left">2025-09-15</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">renv</td>
 <td align="left">1.1.5</td>
 <td align="left">2025-07-24</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">reshape2</td>
 <td align="left">1.4.5</td>
 <td align="left">2025-11-12</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">rio</td>
 <td align="left">1.2.4</td>
 <td align="left">2025-09-26</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">rlang</td>
 <td align="left">1.1.6</td>
 <td align="left">2025-04-11</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">rmarkdown</td>
 <td align="left">2.30</td>
 <td align="left">2025-09-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">robustbase</td>
 <td align="left">0.99-6</td>
 <td align="left">2025-09-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">roxygen2</td>
 <td align="left">7.3.3</td>
 <td align="left">2025-09-03</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">rpart</td>
 <td align="left">4.1.24</td>
 <td align="left">2025-01-07</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">rprojroot</td>
 <td align="left">2.1.1</td>
 <td align="left">2025-08-26</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">rsconnect</td>
 <td align="left">1.7.0</td>
 <td align="left">2025-12-06</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">rstudioapi</td>
 <td align="left">0.17.1</td>
 <td align="left">2024-10-22</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">S7</td>
 <td align="left">0.2.1</td>
 <td align="left">2025-11-14</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">sass</td>
 <td align="left">0.4.10</td>
 <td align="left">2025-04-11</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">scales</td>
 <td align="left">1.4.0</td>
 <td align="left">2025-04-24</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">see</td>
 <td align="left">0.12.0</td>
 <td align="left">2025-09-14</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">sessioninfo</td>
 <td align="left">1.2.3</td>
 <td align="left">2025-02-05</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">shiny</td>
 <td align="left">1.12.1</td>
 <td align="left">2025-12-09</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">shiny.i18n</td>
 <td align="left">0.3.0</td>
 <td align="left">2023-01-16</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">shinybusy</td>
 <td align="left">0.3.3</td>
 <td align="left">2024-03-09</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">shinyjs</td>
 <td align="left">2.1.0</td>
 <td align="left">2021-12-23</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">shinyTime</td>
 <td align="left">1.0.3</td>
 <td align="left">2022-08-19</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">shinyWidgets</td>
 <td align="left">0.9.0</td>
 <td align="left">2025-02-21</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
-<td align="left">smd</td>
-<td align="left">0.8.0</td>
-<td align="left">2025-02-12</td>
+<tr class="odd">
+<td align="left">sourcetools</td>
+<td align="left">0.1.7-1</td>
+<td align="left">2023-02-01</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">stringi</td>
 <td align="left">1.8.7</td>
 <td align="left">2025-03-27</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">stringr</td>
 <td align="left">1.6.0</td>
 <td align="left">2025-11-04</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">stRoke</td>
 <td align="left">25.9.2</td>
 <td align="left">2025-09-30</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
+<tr class="odd">
+<td align="left">styler</td>
+<td align="left">1.11.0</td>
+<td align="left">2025-10-13</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
 <tr class="even">
 <td align="left">systemfonts</td>
 <td align="left">1.3.1</td>
@@ -1308,72 +1344,66 @@ packages and the latest build info.</p>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
 <tr class="odd">
+<td align="left">utf8</td>
+<td align="left">1.2.6</td>
+<td align="left">2025-06-08</td>
+<td align="left">CRAN (R 4.4.1)</td>
+</tr>
+<tr class="even">
 <td align="left">uuid</td>
 <td align="left">1.2-1</td>
 <td align="left">2024-07-29</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">vctrs</td>
 <td align="left">0.6.5</td>
 <td align="left">2023-12-01</td>
 <td align="left">CRAN (R 4.4.0)</td>
 </tr>
-<tr class="odd">
-<td align="left">viridis</td>
-<td align="left">0.6.5</td>
-<td align="left">2024-01-29</td>
-<td align="left">CRAN (R 4.4.0)</td>
-</tr>
 <tr class="even">
-<td align="left">viridisLite</td>
-<td align="left">0.4.2</td>
-<td align="left">2023-05-02</td>
-<td align="left">CRAN (R 4.4.1)</td>
-</tr>
-<tr class="odd">
 <td align="left">vroom</td>
 <td align="left">1.6.7</td>
 <td align="left">2025-11-28</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">withr</td>
 <td align="left">3.0.2</td>
 <td align="left">2024-10-28</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">writexl</td>
 <td align="left">1.5.4</td>
 <td align="left">2025-04-15</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">xfun</td>
 <td align="left">0.54</td>
 <td align="left">2025-10-30</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">xml2</td>
 <td align="left">1.5.1</td>
 <td align="left">2025-12-01</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">xtable</td>
 <td align="left">1.8-4</td>
 <td align="left">2019-04-21</td>
 <td align="left">CRAN (R 4.4.1)</td>
 </tr>
-<tr class="odd">
+<tr class="even">
 <td align="left">yaml</td>
 <td align="left">2.3.11</td>
 <td align="left">2025-11-28</td>
 <td align="left">CRAN (R 4.4.3)</td>
 </tr>
-<tr class="even">
+<tr class="odd">
 <td align="left">zip</td>
 <td align="left">2.3.3</td>
 <td align="left">2025-05-13</td>
diff --git a/articles/session.md b/articles/session.md
index 447146dc..55863054 100644
--- a/articles/session.md
+++ b/articles/session.md
@@ -32,7 +32,7 @@ FreesearchR:::session_data$platform |> knitr::kable()
 | rstudio     | 2025.09.2+418 Cucumberleaf Sunflower (desktop) |
 | pandoc      | 3.6.4 @ /opt/homebrew/bin/ (via rmarkdown)     |
 | quarto      | 1.7.30 @ /usr/local/bin/quarto                 |
-| FreesearchR | 25.12.5.251211                                 |
+| FreesearchR | 25.12.3.251211                                 |
 
 ## Libraries
 
@@ -102,7 +102,7 @@ FreesearchR:::session_data$libs|> knitr::kable()
 | foreach           | 1.5.2         | 2022-02-02 | CRAN (R 4.4.0) |
 | foreign           | 0.8-90        | 2025-03-31 | CRAN (R 4.4.1) |
 | Formula           | 1.2-5         | 2023-02-24 | CRAN (R 4.4.1) |
-| FreesearchR       | 25.12.5       | NA         | NA             |
+| FreesearchR       | 25.12.3       | NA         | NA             |
 | fs                | 1.6.6         | 2025-04-12 | CRAN (R 4.4.1) |
 | gdtools           | 0.4.4         | 2025-10-06 | CRAN (R 4.4.1) |
 | generics          | 0.1.4         | 2025-05-09 | CRAN (R 4.4.1) |
@@ -133,6 +133,7 @@ FreesearchR:::session_data$libs|> knitr::kable()
 | KernSmooth        | 2.23-26       | 2025-01-01 | CRAN (R 4.4.1) |
 | keyring           | 1.4.1         | 2025-06-15 | CRAN (R 4.4.1) |
 | knitr             | 1.50          | 2025-03-16 | CRAN (R 4.4.1) |
+| labeling          | 0.4.3         | 2023-08-29 | CRAN (R 4.4.1) |
 | later             | 1.4.4         | 2025-08-27 | CRAN (R 4.4.1) |
 | lattice           | 0.22-7        | 2025-04-02 | CRAN (R 4.4.1) |
 | lifecycle         | 1.0.4         | 2023-11-07 | CRAN (R 4.4.1) |
@@ -176,6 +177,10 @@ FreesearchR:::session_data$libs|> knitr::kable()
 | qqconf            | 1.3.2         | 2023-04-14 | CRAN (R 4.4.0) |
 | qqplotr           | 0.0.7         | 2025-09-05 | CRAN (R 4.4.1) |
 | quarto            | 1.5.1         | 2025-09-04 | CRAN (R 4.4.1) |
+| R.cache           | 0.17.0        | 2025-05-02 | CRAN (R 4.4.1) |
+| R.methodsS3       | 1.8.2         | 2022-06-13 | CRAN (R 4.4.1) |
+| R.oo              | 1.27.1        | 2025-05-02 | CRAN (R 4.4.1) |
+| R.utils           | 2.13.0        | 2025-02-24 | CRAN (R 4.4.1) |
 | R6                | 2.6.1         | 2025-02-15 | CRAN (R 4.4.1) |
 | ragg              | 1.5.0         | 2025-09-02 | CRAN (R 4.4.1) |
 | rankinPlot        | 1.1.0         | 2023-01-30 | CRAN (R 4.4.0) |
@@ -215,10 +220,11 @@ FreesearchR:::session_data$libs|> knitr::kable()
 | shinyjs           | 2.1.0         | 2021-12-23 | CRAN (R 4.4.0) |
 | shinyTime         | 1.0.3         | 2022-08-19 | CRAN (R 4.4.0) |
 | shinyWidgets      | 0.9.0         | 2025-02-21 | CRAN (R 4.4.1) |
-| smd               | 0.8.0         | 2025-02-12 | CRAN (R 4.4.1) |
+| sourcetools       | 0.1.7-1       | 2023-02-01 | CRAN (R 4.4.1) |
 | stringi           | 1.8.7         | 2025-03-27 | CRAN (R 4.4.1) |
 | stringr           | 1.6.0         | 2025-11-04 | CRAN (R 4.4.1) |
 | stRoke            | 25.9.2        | 2025-09-30 | CRAN (R 4.4.1) |
+| styler            | 1.11.0        | 2025-10-13 | CRAN (R 4.4.1) |
 | systemfonts       | 1.3.1         | 2025-10-01 | CRAN (R 4.4.1) |
 | testthat          | 3.3.1         | 2025-11-25 | CRAN (R 4.4.3) |
 | textshaping       | 1.0.4         | 2025-10-10 | CRAN (R 4.4.1) |
@@ -232,10 +238,9 @@ FreesearchR:::session_data$libs|> knitr::kable()
 | twosamples        | 2.0.1         | 2023-06-23 | CRAN (R 4.4.1) |
 | tzdb              | 0.5.0         | 2025-03-15 | CRAN (R 4.4.1) |
 | usethis           | 3.2.1         | 2025-09-06 | CRAN (R 4.4.1) |
+| utf8              | 1.2.6         | 2025-06-08 | CRAN (R 4.4.1) |
 | uuid              | 1.2-1         | 2024-07-29 | CRAN (R 4.4.1) |
 | vctrs             | 0.6.5         | 2023-12-01 | CRAN (R 4.4.0) |
-| viridis           | 0.6.5         | 2024-01-29 | CRAN (R 4.4.0) |
-| viridisLite       | 0.4.2         | 2023-05-02 | CRAN (R 4.4.1) |
 | vroom             | 1.6.7         | 2025-11-28 | CRAN (R 4.4.3) |
 | withr             | 3.0.2         | 2024-10-28 | CRAN (R 4.4.1) |
 | writexl           | 1.5.4         | 2025-04-15 | CRAN (R 4.4.1) |
diff --git a/articles/visuals.html b/articles/visuals.html
index 13df7b04..95d53699 100644
--- a/articles/visuals.html
+++ b/articles/visuals.html
@@ -29,7 +29,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/authors.html b/authors.html
index 68b1c693..3840199f 100644
--- a/authors.html
+++ b/authors.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -63,13 +63,13 @@
 
       <p>Damsbo A (2025).
 <em>FreesearchR: Easy data analysis for clinicians</em>.
-R package version 25.12.5, <a href="https://github.com/agdamsbo/FreesearchR" class="external-link">https://github.com/agdamsbo/FreesearchR</a>.
+R package version 25.12.3, <a href="https://github.com/agdamsbo/FreesearchR" class="external-link">https://github.com/agdamsbo/FreesearchR</a>.
 </p>
       <pre>@Manual{,
   title = {FreesearchR: Easy data analysis for clinicians},
   author = {Andreas Gammelgaard Damsbo},
   year = {2025},
-  note = {R package version 25.12.5},
+  note = {R package version 25.12.3},
   url = {https://github.com/agdamsbo/FreesearchR},
 }</pre>
     </div>
diff --git a/authors.md b/authors.md
index 350de5ad..dbfd3dba 100644
--- a/authors.md
+++ b/authors.md
@@ -15,12 +15,12 @@ Source:
 [`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/main/DESCRIPTION)
 
 Damsbo A (2025). *FreesearchR: Easy data analysis for clinicians*. R
-package version 25.12.5, <https://github.com/agdamsbo/FreesearchR>.
+package version 25.12.3, <https://github.com/agdamsbo/FreesearchR>.
 
     @Manual{,
       title = {FreesearchR: Easy data analysis for clinicians},
       author = {Andreas Gammelgaard Damsbo},
       year = {2025},
-      note = {R package version 25.12.5},
+      note = {R package version 25.12.3},
       url = {https://github.com/agdamsbo/FreesearchR},
     }
diff --git a/index.html b/index.html
index daf1afbf..b9ea4314 100644
--- a/index.html
+++ b/index.html
@@ -32,7 +32,7 @@
 
     <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/news/index.html b/news/index.html
index 89987d35..3d874661 100644
--- a/news/index.html
+++ b/news/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -41,14 +41,6 @@
       <small>Source: <a href="https://github.com/agdamsbo/FreesearchR/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
-    <div class="section level2">
-<h2 class="pkg-version" data-toc-text="25.12.5" id="freesearchr-25125">FreesearchR 25.12.5<a class="anchor" aria-label="anchor" href="#freesearchr-25125"></a></h2>
-<p><em>NEW</em> Added option to add pairwise differences in discriptive table.</p>
-</div>
-    <div class="section level2">
-<h2 class="pkg-version" data-toc-text="25.12.4" id="freesearchr-25124">FreesearchR 25.12.4<a class="anchor" aria-label="anchor" href="#freesearchr-25124"></a></h2>
-<p>Republish 25.12.3</p>
-</div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="25.12.3" id="freesearchr-25123">FreesearchR 25.12.3<a class="anchor" aria-label="anchor" href="#freesearchr-25123"></a></h2>
 <p><em>NEW</em> Extended missingness evaluation to include two different approaches. Docs will catch up and video tutorials are coming.</p>
diff --git a/news/index.md b/news/index.md
index d3bd2e5a..6e9acfbb 100644
--- a/news/index.md
+++ b/news/index.md
@@ -1,13 +1,5 @@
 # Changelog
 
-## FreesearchR 25.12.5
-
-*NEW* Added option to add pairwise differences in discriptive table.
-
-## FreesearchR 25.12.4
-
-Republish 25.12.3
-
 ## FreesearchR 25.12.3
 
 *NEW* Extended missingness evaluation to include two different
diff --git a/pkgdown.yml b/pkgdown.yml
index 079d3298..e2b3dd00 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -7,7 +7,7 @@ articles:
   missingness: missingness.html
   session: session.html
   visuals: visuals.html
-last_built: 2025-12-11T22:05Z
+last_built: 2025-12-11T08:51Z
 urls:
   reference: https://agdamsbo.github.io/FreesearchR/reference
   article: https://agdamsbo.github.io/FreesearchR/articles
diff --git a/reference/FreesearchR_palette.html b/reference/FreesearchR_palette.html
index 6945801c..6332f818 100644
--- a/reference/FreesearchR_palette.html
+++ b/reference/FreesearchR_palette.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html
index fb565963..6916f557 100644
--- a/reference/add_class_icon.html
+++ b/reference/add_class_icon.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html
index 153b9e77..f0f5b308 100644
--- a/reference/add_sparkline.html
+++ b/reference/add_sparkline.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/align_axes.html b/reference/align_axes.html
index 1dd7351e..d7e59a68 100644
--- a/reference/align_axes.html
+++ b/reference/align_axes.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/all_but.html b/reference/all_but.html
index 09c8e969..995587f6 100644
--- a/reference/all_but.html
+++ b/reference/all_but.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/append_column.html b/reference/append_column.html
index 7cbcb1a3..007cec3d 100644
--- a/reference/append_column.html
+++ b/reference/append_column.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/append_list.html b/reference/append_list.html
index a62fe4bb..bd643d23 100644
--- a/reference/append_list.html
+++ b/reference/append_list.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html
index 11273b5b..dd0a76c4 100644
--- a/reference/argsstring2list.html
+++ b/reference/argsstring2list.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/baseline_table.html b/reference/baseline_table.html
index 288c8b04..50932116 100644
--- a/reference/baseline_table.html
+++ b/reference/baseline_table.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/class_icons.html b/reference/class_icons.html
index 41b29110..f90cc84f 100644
--- a/reference/class_icons.html
+++ b/reference/class_icons.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/clean_common_axis.html b/reference/clean_common_axis.html
index d6f76ca9..4dc870a0 100644
--- a/reference/clean_common_axis.html
+++ b/reference/clean_common_axis.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/clean_date.html b/reference/clean_date.html
index 44336674..bdec0d00 100644
--- a/reference/clean_date.html
+++ b/reference/clean_date.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/clean_sep.html b/reference/clean_sep.html
index d5efe2c9..f36b58bd 100644
--- a/reference/clean_sep.html
+++ b/reference/clean_sep.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/collapse_spaces.html b/reference/collapse_spaces.html
index 7f6b2eea..32d8e996 100644
--- a/reference/collapse_spaces.html
+++ b/reference/collapse_spaces.html
@@ -9,7 +9,7 @@ but it works"><meta property="og:image" content="https://agdamsbo.github.io/Free
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html
index def56169..f92a5f34 100644
--- a/reference/columnSelectInput.html
+++ b/reference/columnSelectInput.html
@@ -9,7 +9,7 @@ Adds the option to select "none" which is handled later'><meta property="og:imag
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/compare_missings.html b/reference/compare_missings.html
index 1a54ea82..ba2b2907 100644
--- a/reference/compare_missings.html
+++ b/reference/compare_missings.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/contrast_text.html b/reference/contrast_text.html
index c7eaee54..6a8bb9e2 100644
--- a/reference/contrast_text.html
+++ b/reference/contrast_text.html
@@ -9,7 +9,7 @@ background color."><meta property="og:image" content="https://agdamsbo.github.io
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/corr_pairs_validate.html b/reference/corr_pairs_validate.html
index 2313e2d9..7d82f69c 100644
--- a/reference/corr_pairs_validate.html
+++ b/reference/corr_pairs_validate.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/correlation_pairs.html b/reference/correlation_pairs.html
index 792011e7..7375b808 100644
--- a/reference/correlation_pairs.html
+++ b/reference/correlation_pairs.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/create-column.html b/reference/create-column.html
index 0de95524..6a8b431d 100644
--- a/reference/create-column.html
+++ b/reference/create-column.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/create_baseline.html b/reference/create_baseline.html
index 6ae8b5a1..2d53c1bb 100644
--- a/reference/create_baseline.html
+++ b/reference/create_baseline.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -53,7 +53,6 @@
 <span>  <span class="va">...</span>,</span>
 <span>  <span class="va">by.var</span>,</span>
 <span>  add.p <span class="op">=</span> <span class="cn">FALSE</span>,</span>
-<span>  add.diff <span class="op">=</span> <span class="cn">FALSE</span>,</span>
 <span>  add.overall <span class="op">=</span> <span class="cn">FALSE</span>,</span>
 <span>  theme <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"jama"</span>, <span class="st">"lancet"</span>, <span class="st">"nejm"</span>, <span class="st">"qjecon"</span><span class="op">)</span>,</span>
 <span>  detail_level <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"minimal"</span>, <span class="st">"extended"</span><span class="op">)</span></span>
diff --git a/reference/create_baseline.md b/reference/create_baseline.md
index 06d92a0f..d27d246d 100644
--- a/reference/create_baseline.md
+++ b/reference/create_baseline.md
@@ -10,7 +10,6 @@ create_baseline(
   ...,
   by.var,
   add.p = FALSE,
-  add.diff = FALSE,
   add.overall = FALSE,
   theme = c("jama", "lancet", "nejm", "qjecon"),
   detail_level = c("minimal", "extended")
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html
index 3994b56a..4eca4972 100644
--- a/reference/create_log_tics.html
+++ b/reference/create_log_tics.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/create_overview_datagrid.html b/reference/create_overview_datagrid.html
index bd399907..60241910 100644
--- a/reference/create_overview_datagrid.html
+++ b/reference/create_overview_datagrid.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/custom_theme.html b/reference/custom_theme.html
index e468e4ff..09ff5fb6 100644
--- a/reference/custom_theme.html
+++ b/reference/custom_theme.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cut-variable.html b/reference/cut-variable.html
index 2fa36ca5..296f8311 100644
--- a/reference/cut-variable.html
+++ b/reference/cut-variable.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cut_methods.html b/reference/cut_methods.html
index ee69f975..3b2e7ac5 100644
--- a/reference/cut_methods.html
+++ b/reference/cut_methods.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cut_var.html b/reference/cut_var.html
index 5c76630c..715b17cb 100644
--- a/reference/cut_var.html
+++ b/reference/cut_var.html
@@ -11,7 +11,7 @@ Subset first part of string to factor"><meta property="og:image" content="https:
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data-correlations.html b/reference/data-correlations.html
index cad11d24..c8a8f8ea 100644
--- a/reference/data-correlations.html
+++ b/reference/data-correlations.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data-missings.html b/reference/data-missings.html
index 74378dcb..d29305ea 100644
--- a/reference/data-missings.html
+++ b/reference/data-missings.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data-plots-10.png b/reference/data-plots-10.png
index bb038813..e55164c4 100644
Binary files a/reference/data-plots-10.png and b/reference/data-plots-10.png differ
diff --git a/reference/data-plots-11.png b/reference/data-plots-11.png
index 505c10cc..acc4fb6b 100644
Binary files a/reference/data-plots-11.png and b/reference/data-plots-11.png differ
diff --git a/reference/data-plots-12.png b/reference/data-plots-12.png
index eee1acca..58808c8b 100644
Binary files a/reference/data-plots-12.png and b/reference/data-plots-12.png differ
diff --git a/reference/data-plots-3.png b/reference/data-plots-3.png
index a1205615..4a5ac605 100644
Binary files a/reference/data-plots-3.png and b/reference/data-plots-3.png differ
diff --git a/reference/data-plots-4.png b/reference/data-plots-4.png
index 44127527..584811d6 100644
Binary files a/reference/data-plots-4.png and b/reference/data-plots-4.png differ
diff --git a/reference/data-plots-5.png b/reference/data-plots-5.png
index d1f0d94e..bb038813 100644
Binary files a/reference/data-plots-5.png and b/reference/data-plots-5.png differ
diff --git a/reference/data-plots-6.png b/reference/data-plots-6.png
index 44127527..505c10cc 100644
Binary files a/reference/data-plots-6.png and b/reference/data-plots-6.png differ
diff --git a/reference/data-plots-7.png b/reference/data-plots-7.png
index 25a86227..4e7c81eb 100644
Binary files a/reference/data-plots-7.png and b/reference/data-plots-7.png differ
diff --git a/reference/data-plots-8.png b/reference/data-plots-8.png
index 4a5ac605..9ea0f243 100644
Binary files a/reference/data-plots-8.png and b/reference/data-plots-8.png differ
diff --git a/reference/data-plots-9.png b/reference/data-plots-9.png
index 584811d6..e18e3599 100644
Binary files a/reference/data-plots-9.png and b/reference/data-plots-9.png differ
diff --git a/reference/data-plots.html b/reference/data-plots.html
index 061b6d21..cc1e2d30 100644
--- a/reference/data-plots.html
+++ b/reference/data-plots.html
@@ -27,7 +27,7 @@ Beatiful violin plot"><meta property="og:image" content="https://agdamsbo.github
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -732,7 +732,7 @@ One of c("stack", "dodge", "fill")</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> list()</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $plot_env</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x561187f34788&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x564345c05938&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $code</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL)</span>
@@ -747,44 +747,40 @@ One of c("stack", "dodge", "fill")</p></dd>
 <span class="r-in"><span>  <span class="fu">plot_bar_single</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"cyl"</span>, style <span class="op">=</span> <span class="st">"stack"</span><span class="op">)</span></span></span>
 <span class="r-plt img"><img src="data-plots-2.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
-<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec<span class="op">=</span><span class="st">"cyl"</span><span class="op">)</span></span></span>
-<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in plot_box(default_parsing(mtcars), pri = "mpg", sec = "cyl", ter = "gear"):</span> object 'i18n' not found</span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu">plot_box</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span>,axis.font.family<span class="op">=</span><span class="st">"mono"</span><span class="op">)</span></span></span>
-<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in plot_box(default_parsing(mtcars), pri = "mpg", sec = "cyl", ter = "gear",     axis.font.family = "mono"):</span> object 'i18n' not found</span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span><span class="op">)</span></span></span>
-<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"mpg"</span>,<span class="st">"cyl"</span><span class="op">)</span></span></span>
-<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="va"><a href="https://www.danieldsjoberg.com/gtsummary/reference/trial.html" class="external-link">trial</a></span> <span class="op">|&gt;</span> <span class="fu">plot_box_single</span><span class="op">(</span><span class="st">"age"</span>,<span class="st">"trt"</span><span class="op">)</span></span></span>
-<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Removed 11 rows containing non-finite outside the scale range</span>
-<span class="r-wrn co"><span class="r-pr">#&gt;</span> (`stat_boxplot()`).</span>
-<span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Removed 11 rows containing missing values or values outside the scale range</span>
-<span class="r-wrn co"><span class="r-pr">#&gt;</span> (`geom_point()`).</span>
-<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
+<span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in loadNamespace(x):</span> there is no package called ‘viridis’</span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
-<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-3.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter<span class="op">=</span><span class="st">"am"</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
-<span class="r-plt img"><img src="data-plots-9.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-4.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_hbars</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"carb"</span>, sec <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Scale for <span style="color: #00BB00;">fill</span> is already present.</span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Adding another scale for <span style="color: #00BB00;">fill</span>, which will replace the existing scale.</span>
-<span class="r-plt img"><img src="data-plots-10.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-5.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Picking joint bandwidth of 1.38</span>
-<span class="r-plt img"><img src="data-plots-11.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-6.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_ridge</span><span class="op">(</span>x <span class="op">=</span> <span class="st">"mpg"</span>, y <span class="op">=</span> <span class="st">"cyl"</span>, z <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Picking joint bandwidth of 1.52</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>The following aesthetics were dropped during statistical transformation: <span style="color: #00BB00;">y</span> and</span>
@@ -802,48 +798,48 @@ One of c("stack", "dodge", "fill")</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 7</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    first last      n gx.sum gy.sum lx          ly         </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>  <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>  <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>      </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> d     d        11     36     18 <span style="color: #949494;">"</span>d\n(n=36)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> d     a        11     36     30 <span style="color: #949494;">"</span>d\n(n=36)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=30)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> d     b         6     36     25 <span style="color: #949494;">"</span>d\n(n=36)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> d     c         8     36     22 <span style="color: #949494;">"</span>d\n(n=36)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=22)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> c     d         3     24     18 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> c     a         7     24     30 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=30)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> a     c         7     24     23 <span style="color: #949494;">"</span>a\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=23)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> a     b         6     24     25 <span style="color: #949494;">"</span>a\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> a     d         2     24     18 <span style="color: #949494;">"</span>a\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> a     a         8     24     29 <span style="color: #949494;">"</span>a\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=29)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> a     <span style="color: #BB0000;">NA</span>        1     24      5 <span style="color: #949494;">"</span>a\n(n=24)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>        </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> c     c         1     24     23 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=23)<span style="color: #949494;">"</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> c     b        10     24     25 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> c     c         1     24     22 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=22)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> c     <span style="color: #BB0000;">NA</span>        3     24      5 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>        </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> b     d         2     17     18 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> b     a         4     17     30 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=30)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> b     b         3     17     25 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> b     c         7     17     22 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=22)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> b     <span style="color: #BB0000;">NA</span>        1     17      5 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>        </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> a     d         2     23     18 <span style="color: #949494;">"</span>a\n(n=23)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> a     a         8     23     30 <span style="color: #949494;">"</span>a\n(n=23)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=30)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> a     b         6     23     25 <span style="color: #949494;">"</span>a\n(n=23)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> a     c         6     23     22 <span style="color: #949494;">"</span>a\n(n=23)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=22)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> a     <span style="color: #BB0000;">NA</span>        1     23      5 <span style="color: #949494;">"</span>a\n(n=23)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>        </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> c     d         3     24     18 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> c     a         7     24     29 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=29)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> c     <span style="color: #BB0000;">NA</span>        3     24      5 <span style="color: #949494;">"</span>c\n(n=24)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>        </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> d     c         8     35     23 <span style="color: #949494;">"</span>d\n(n=35)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=23)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> d     b         6     35     25 <span style="color: #949494;">"</span>d\n(n=35)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> d     d        11     35     18 <span style="color: #949494;">"</span>d\n(n=35)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> d     a        10     35     29 <span style="color: #949494;">"</span>d\n(n=35)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=29)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> b     c         7     17     23 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(n=23)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> b     b         3     17     25 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(n=25)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> b     d         2     17     18 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(n=18)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> b     a         4     17     29 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(n=29)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> b     <span style="color: #BB0000;">NA</span>        1     17      5 <span style="color: #949494;">"</span>b\n(n=17)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>        </span>
 <span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">sankey_ready</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, numbers <span class="op">=</span> <span class="st">"percentage"</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 7</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    first last      n gx.sum gy.sum lx         ly        </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>  <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>  <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>     </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> d     d        11     36     18 <span style="color: #949494;">"</span>d\n(36%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> d     a        11     36     30 <span style="color: #949494;">"</span>d\n(36%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(30%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> d     b         6     36     25 <span style="color: #949494;">"</span>d\n(36%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> d     c         8     36     22 <span style="color: #949494;">"</span>d\n(36%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(22%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> c     d         3     24     18 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> c     a         7     24     30 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(30%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> a     c         7     24     23 <span style="color: #949494;">"</span>a\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(23%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> a     b         6     24     25 <span style="color: #949494;">"</span>a\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> a     d         2     24     18 <span style="color: #949494;">"</span>a\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> a     a         8     24     29 <span style="color: #949494;">"</span>a\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(29%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> a     <span style="color: #BB0000;">NA</span>        1     24      5 <span style="color: #949494;">"</span>a\n(24%)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> c     c         1     24     23 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(23%)<span style="color: #949494;">"</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> c     b        10     24     25 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> c     c         1     24     22 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(22%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> c     <span style="color: #BB0000;">NA</span>        3     24      5 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> b     d         2     17     18 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> b     a         4     17     30 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(30%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> b     b         3     17     25 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> b     c         7     17     22 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(22%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> b     <span style="color: #BB0000;">NA</span>        1     17      5 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> a     d         2     23     18 <span style="color: #949494;">"</span>a\n(23%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> a     a         8     23     30 <span style="color: #949494;">"</span>a\n(23%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(30%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> a     b         6     23     25 <span style="color: #949494;">"</span>a\n(23%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> a     c         6     23     22 <span style="color: #949494;">"</span>a\n(23%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(22%)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> a     <span style="color: #BB0000;">NA</span>        1     23      5 <span style="color: #949494;">"</span>a\n(23%)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> c     d         3     24     18 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> c     a         7     24     29 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(29%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> c     <span style="color: #BB0000;">NA</span>        3     24      5 <span style="color: #949494;">"</span>c\n(24%)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> d     c         8     35     23 <span style="color: #949494;">"</span>d\n(35%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(23%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> d     b         6     35     25 <span style="color: #949494;">"</span>d\n(35%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">13</span> d     d        11     35     18 <span style="color: #949494;">"</span>d\n(35%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">14</span> d     a        10     35     29 <span style="color: #949494;">"</span>d\n(35%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(29%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">15</span> b     c         7     17     23 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>c\n(23%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">16</span> b     b         3     17     25 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>b\n(25%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">17</span> b     d         2     17     18 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>d\n(18%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">18</span> b     a         4     17     29 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>a\n(29%)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">19</span> b     <span style="color: #BB0000;">NA</span>        1     17      5 <span style="color: #949494;">"</span>b\n(17%)<span style="color: #949494;">"</span>  <span style="color: #BB0000;">NA</span>       </span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span></span>
 <span class="r-in"><span>  g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>,</span></span>
 <span class="r-in"><span>  first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>,</span></span>
@@ -853,32 +849,32 @@ One of c("stack", "dodge", "fill")</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 8 × 7</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   first last      n gx.sum gy.sum lx          ly             </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>  <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>  <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>          </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> b     FALSE    16     29     66 <span style="color: #949494;">"</span>b\n(n=29)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> b     TRUE     13     29     34 <span style="color: #949494;">"</span>b\n(n=29)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> a     FALSE    18     25     66 <span style="color: #949494;">"</span>a\n(n=25)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> a     TRUE      7     25     34 <span style="color: #949494;">"</span>a\n(n=25)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> d     FALSE    13     20     66 <span style="color: #949494;">"</span>d\n(n=20)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> d     TRUE      7     20     34 <span style="color: #949494;">"</span>d\n(n=20)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">7</span> c     FALSE    19     26     66 <span style="color: #949494;">"</span>c\n(n=26)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">8</span> c     TRUE      7     26     34 <span style="color: #949494;">"</span>c\n(n=26)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> d     FALSE    13     21     66 <span style="color: #949494;">"</span>d\n(n=21)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> d     TRUE      8     21     34 <span style="color: #949494;">"</span>d\n(n=21)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> b     FALSE    18     28     66 <span style="color: #949494;">"</span>b\n(n=28)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> b     TRUE     10     28     34 <span style="color: #949494;">"</span>b\n(n=28)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> a     FALSE    19     25     66 <span style="color: #949494;">"</span>a\n(n=25)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> a     TRUE      6     25     34 <span style="color: #949494;">"</span>a\n(n=25)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">7</span> c     FALSE    16     26     66 <span style="color: #949494;">"</span>c\n(n=26)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>FALSE\n(n=66)<span style="color: #949494;">"</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">8</span> c     TRUE     10     26     34 <span style="color: #949494;">"</span>c\n(n=26)<span style="color: #949494;">"</span> <span style="color: #949494;">"</span>TRUE\n(n=34)<span style="color: #949494;">"</span> </span>
 <span class="r-in"><span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>g <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">LETTERS</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span>, first <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span>, last <span class="op">=</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="fu">as_factor</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="va">letters</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">]</span>, <span class="fl">100</span>, <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Loading required package: ggplot2</span>
-<span class="r-plt img"><img src="data-plots-12.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-7.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, color.group <span class="op">=</span> <span class="st">"sec"</span><span class="op">)</span></span></span>
-<span class="r-plt img"><img src="data-plots-13.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-8.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">ds</span> <span class="op">|&gt;</span> <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"first"</span>, <span class="st">"last"</span>, ter <span class="op">=</span> <span class="st">"g"</span>, color.group <span class="op">=</span> <span class="st">"sec"</span><span class="op">)</span></span></span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
-<span class="r-plt img"><img src="data-plots-14.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-9.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu">plot_sankey</span><span class="op">(</span><span class="st">"cyl"</span>, <span class="st">"gear"</span>, <span class="st">"am"</span>, color.group <span class="op">=</span> <span class="st">"pri"</span><span class="op">)</span></span></span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
-<span class="r-plt img"><img src="data-plots-15.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-10.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="co">## In this case, the last plot as the secondary variable in wrong order</span></span></span>
 <span class="r-in"><span><span class="co">## Dont know why...</span></span></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
@@ -887,11 +883,11 @@ One of c("stack", "dodge", "fill")</p></dd>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
 <span class="r-wrn co"><span class="r-pr">#&gt;</span> <span class="warning">Warning: </span>Some strata appear at multiple axes.</span>
-<span class="r-plt img"><img src="data-plots-16.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-11.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_scatter</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"wt"</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Ignoring unknown labels:</span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> <span style="color: #00BBBB;">•</span> <span style="color: #00BB00;">legend.title</span> : <span style="color: #0000BB;">""</span></span>
-<span class="r-plt img"><img src="data-plots-17.png" alt="" width="700" height="433"></span>
+<span class="r-plt img"><img src="data-plots-12.png" alt="" width="700" height="433"></span>
 <span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">plot_violin</span><span class="op">(</span>pri <span class="op">=</span> <span class="st">"mpg"</span>, sec <span class="op">=</span> <span class="st">"cyl"</span>, ter <span class="op">=</span> <span class="st">"gear"</span><span class="op">)</span></span></span>
 <span class="r-err co"><span class="r-pr">#&gt;</span> <span class="error">Error in plot_violin(mtcars, pri = "mpg", sec = "cyl", ter = "gear"):</span> object 'i18n' not found</span>
 </code></pre></div>
diff --git a/reference/data-plots.md b/reference/data-plots.md
index be63ca08..5832cc46 100644
--- a/reference/data-plots.md
+++ b/reference/data-plots.md
@@ -688,7 +688,7 @@ create_plot(mtcars, "plot_violin", "mpg", "cyl") |> attributes()
 #> list()
 #> 
 #> $plot_env
-#> <environment: 0x561187f34788>
+#> <environment: 0x564345c05938>
 #> 
 #> $code
 #> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL)
@@ -703,27 +703,23 @@ mtcars |>
   plot_bar_single(pri = "cyl", style = "stack")
 
 mtcars |> plot_box(pri = "mpg", sec = "gear")
-
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 mtcars |> plot_box(pri = "mpg", sec="cyl")
-
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 mtcars |>
   default_parsing() |>
   plot_box(pri = "mpg", sec = "cyl", ter = "gear")
-#> Error in plot_box(default_parsing(mtcars), pri = "mpg", sec = "cyl", ter = "gear"): object 'i18n' not found
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 mtcars |>
   default_parsing() |>
   plot_box(pri = "mpg", sec = "cyl", ter = "gear",axis.font.family="mono")
-#> Error in plot_box(default_parsing(mtcars), pri = "mpg", sec = "cyl", ter = "gear",     axis.font.family = "mono"): object 'i18n' not found
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 mtcars |> plot_box_single("mpg")
-
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 mtcars |> plot_box_single("mpg","cyl")
-
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 gtsummary::trial |> plot_box_single("age","trt")
-#> Warning: Removed 11 rows containing non-finite outside the scale range
-#> (`stat_boxplot()`).
-#> Warning: Removed 11 rows containing missing values or values outside the scale range
-#> (`geom_point()`).
-
+#> Error in loadNamespace(x): there is no package called ‘viridis’
 mtcars |> plot_hbars(pri = "carb", sec = "cyl")
 #> Scale for fill is already present.
 #> Adding another scale for fill, which will replace the existing scale.
@@ -758,48 +754,48 @@ ds |> sankey_ready("first", "last")
 #> # A tibble: 19 × 7
 #>    first last      n gx.sum gy.sum lx          ly         
 #>    <fct> <fct> <int>  <int>  <int> <fct>       <fct>      
-#>  1 d     d        11     36     18 "d\n(n=36)" "d\n(n=18)"
-#>  2 d     a        11     36     30 "d\n(n=36)" "a\n(n=30)"
-#>  3 d     b         6     36     25 "d\n(n=36)" "b\n(n=25)"
-#>  4 d     c         8     36     22 "d\n(n=36)" "c\n(n=22)"
-#>  5 c     d         3     24     18 "c\n(n=24)" "d\n(n=18)"
-#>  6 c     a         7     24     30 "c\n(n=24)" "a\n(n=30)"
+#>  1 a     c         7     24     23 "a\n(n=24)" "c\n(n=23)"
+#>  2 a     b         6     24     25 "a\n(n=24)" "b\n(n=25)"
+#>  3 a     d         2     24     18 "a\n(n=24)" "d\n(n=18)"
+#>  4 a     a         8     24     29 "a\n(n=24)" "a\n(n=29)"
+#>  5 a     NA        1     24      5 "a\n(n=24)"  NA        
+#>  6 c     c         1     24     23 "c\n(n=24)" "c\n(n=23)"
 #>  7 c     b        10     24     25 "c\n(n=24)" "b\n(n=25)"
-#>  8 c     c         1     24     22 "c\n(n=24)" "c\n(n=22)"
-#>  9 c     NA        3     24      5 "c\n(n=24)"  NA        
-#> 10 b     d         2     17     18 "b\n(n=17)" "d\n(n=18)"
-#> 11 b     a         4     17     30 "b\n(n=17)" "a\n(n=30)"
-#> 12 b     b         3     17     25 "b\n(n=17)" "b\n(n=25)"
-#> 13 b     c         7     17     22 "b\n(n=17)" "c\n(n=22)"
-#> 14 b     NA        1     17      5 "b\n(n=17)"  NA        
-#> 15 a     d         2     23     18 "a\n(n=23)" "d\n(n=18)"
-#> 16 a     a         8     23     30 "a\n(n=23)" "a\n(n=30)"
-#> 17 a     b         6     23     25 "a\n(n=23)" "b\n(n=25)"
-#> 18 a     c         6     23     22 "a\n(n=23)" "c\n(n=22)"
-#> 19 a     NA        1     23      5 "a\n(n=23)"  NA        
+#>  8 c     d         3     24     18 "c\n(n=24)" "d\n(n=18)"
+#>  9 c     a         7     24     29 "c\n(n=24)" "a\n(n=29)"
+#> 10 c     NA        3     24      5 "c\n(n=24)"  NA        
+#> 11 d     c         8     35     23 "d\n(n=35)" "c\n(n=23)"
+#> 12 d     b         6     35     25 "d\n(n=35)" "b\n(n=25)"
+#> 13 d     d        11     35     18 "d\n(n=35)" "d\n(n=18)"
+#> 14 d     a        10     35     29 "d\n(n=35)" "a\n(n=29)"
+#> 15 b     c         7     17     23 "b\n(n=17)" "c\n(n=23)"
+#> 16 b     b         3     17     25 "b\n(n=17)" "b\n(n=25)"
+#> 17 b     d         2     17     18 "b\n(n=17)" "d\n(n=18)"
+#> 18 b     a         4     17     29 "b\n(n=17)" "a\n(n=29)"
+#> 19 b     NA        1     17      5 "b\n(n=17)"  NA        
 ds |> sankey_ready("first", "last", numbers = "percentage")
 #> # A tibble: 19 × 7
 #>    first last      n gx.sum gy.sum lx         ly        
 #>    <fct> <fct> <int>  <int>  <int> <fct>      <fct>     
-#>  1 d     d        11     36     18 "d\n(36%)" "d\n(18%)"
-#>  2 d     a        11     36     30 "d\n(36%)" "a\n(30%)"
-#>  3 d     b         6     36     25 "d\n(36%)" "b\n(25%)"
-#>  4 d     c         8     36     22 "d\n(36%)" "c\n(22%)"
-#>  5 c     d         3     24     18 "c\n(24%)" "d\n(18%)"
-#>  6 c     a         7     24     30 "c\n(24%)" "a\n(30%)"
+#>  1 a     c         7     24     23 "a\n(24%)" "c\n(23%)"
+#>  2 a     b         6     24     25 "a\n(24%)" "b\n(25%)"
+#>  3 a     d         2     24     18 "a\n(24%)" "d\n(18%)"
+#>  4 a     a         8     24     29 "a\n(24%)" "a\n(29%)"
+#>  5 a     NA        1     24      5 "a\n(24%)"  NA       
+#>  6 c     c         1     24     23 "c\n(24%)" "c\n(23%)"
 #>  7 c     b        10     24     25 "c\n(24%)" "b\n(25%)"
-#>  8 c     c         1     24     22 "c\n(24%)" "c\n(22%)"
-#>  9 c     NA        3     24      5 "c\n(24%)"  NA       
-#> 10 b     d         2     17     18 "b\n(17%)" "d\n(18%)"
-#> 11 b     a         4     17     30 "b\n(17%)" "a\n(30%)"
-#> 12 b     b         3     17     25 "b\n(17%)" "b\n(25%)"
-#> 13 b     c         7     17     22 "b\n(17%)" "c\n(22%)"
-#> 14 b     NA        1     17      5 "b\n(17%)"  NA       
-#> 15 a     d         2     23     18 "a\n(23%)" "d\n(18%)"
-#> 16 a     a         8     23     30 "a\n(23%)" "a\n(30%)"
-#> 17 a     b         6     23     25 "a\n(23%)" "b\n(25%)"
-#> 18 a     c         6     23     22 "a\n(23%)" "c\n(22%)"
-#> 19 a     NA        1     23      5 "a\n(23%)"  NA       
+#>  8 c     d         3     24     18 "c\n(24%)" "d\n(18%)"
+#>  9 c     a         7     24     29 "c\n(24%)" "a\n(29%)"
+#> 10 c     NA        3     24      5 "c\n(24%)"  NA       
+#> 11 d     c         8     35     23 "d\n(35%)" "c\n(23%)"
+#> 12 d     b         6     35     25 "d\n(35%)" "b\n(25%)"
+#> 13 d     d        11     35     18 "d\n(35%)" "d\n(18%)"
+#> 14 d     a        10     35     29 "d\n(35%)" "a\n(29%)"
+#> 15 b     c         7     17     23 "b\n(17%)" "c\n(23%)"
+#> 16 b     b         3     17     25 "b\n(17%)" "b\n(25%)"
+#> 17 b     d         2     17     18 "b\n(17%)" "d\n(18%)"
+#> 18 b     a         4     17     29 "b\n(17%)" "a\n(29%)"
+#> 19 b     NA        1     17      5 "b\n(17%)"  NA       
 data.frame(
   g = sample(LETTERS[1:2], 100, TRUE),
   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),
@@ -809,14 +805,14 @@ data.frame(
 #> # A tibble: 8 × 7
 #>   first last      n gx.sum gy.sum lx          ly             
 #>   <fct> <fct> <int>  <int>  <int> <fct>       <fct>          
-#> 1 b     FALSE    16     29     66 "b\n(n=29)" "FALSE\n(n=66)"
-#> 2 b     TRUE     13     29     34 "b\n(n=29)" "TRUE\n(n=34)" 
-#> 3 a     FALSE    18     25     66 "a\n(n=25)" "FALSE\n(n=66)"
-#> 4 a     TRUE      7     25     34 "a\n(n=25)" "TRUE\n(n=34)" 
-#> 5 d     FALSE    13     20     66 "d\n(n=20)" "FALSE\n(n=66)"
-#> 6 d     TRUE      7     20     34 "d\n(n=20)" "TRUE\n(n=34)" 
-#> 7 c     FALSE    19     26     66 "c\n(n=26)" "FALSE\n(n=66)"
-#> 8 c     TRUE      7     26     34 "c\n(n=26)" "TRUE\n(n=34)" 
+#> 1 d     FALSE    13     21     66 "d\n(n=21)" "FALSE\n(n=66)"
+#> 2 d     TRUE      8     21     34 "d\n(n=21)" "TRUE\n(n=34)" 
+#> 3 b     FALSE    18     28     66 "b\n(n=28)" "FALSE\n(n=66)"
+#> 4 b     TRUE     10     28     34 "b\n(n=28)" "TRUE\n(n=34)" 
+#> 5 a     FALSE    19     25     66 "a\n(n=25)" "FALSE\n(n=66)"
+#> 6 a     TRUE      6     25     34 "a\n(n=25)" "TRUE\n(n=34)" 
+#> 7 c     FALSE    16     26     66 "c\n(n=26)" "FALSE\n(n=66)"
+#> 8 c     TRUE     10     26     34 "c\n(n=26)" "TRUE\n(n=34)" 
 ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)))
 ds |> plot_sankey("first", "last")
 #> Loading required package: ggplot2
diff --git a/reference/data-summary.html b/reference/data-summary.html
index 2365233b..c16830ae 100644
--- a/reference/data-summary.html
+++ b/reference/data-summary.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data_description.html b/reference/data_description.html
index feaf0fde..e293a2c3 100644
--- a/reference/data_description.html
+++ b/reference/data_description.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data_summary_gather.html b/reference/data_summary_gather.html
index 96c2c858..7df96310 100644
--- a/reference/data_summary_gather.html
+++ b/reference/data_summary_gather.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data_type.html b/reference/data_type.html
index cf6e0de3..98538175 100644
--- a/reference/data_type.html
+++ b/reference/data_type.html
@@ -9,7 +9,7 @@ meaningful "clinical" data type.'><meta property="og:image" content="https://agd
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data_type_filter.html b/reference/data_type_filter.html
index 0eb6b0b9..29b3817b 100644
--- a/reference/data_type_filter.html
+++ b/reference/data_type_filter.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/data_types.html b/reference/data_types.html
index 53b18cc0..2ab7ad20 100644
--- a/reference/data_types.html
+++ b/reference/data_types.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/default_format_arguments.html b/reference/default_format_arguments.html
index 19d07cc2..14b13118 100644
--- a/reference/default_format_arguments.html
+++ b/reference/default_format_arguments.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/default_parsing.html b/reference/default_parsing.html
index bcbc1f4f..a7bb2650 100644
--- a/reference/default_parsing.html
+++ b/reference/default_parsing.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/detect_delimiter.html b/reference/detect_delimiter.html
index 505360f1..c5a9290d 100644
--- a/reference/detect_delimiter.html
+++ b/reference/detect_delimiter.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/dim_change_call.html b/reference/dim_change_call.html
index b953cd30..a5c098f8 100644
--- a/reference/dim_change_call.html
+++ b/reference/dim_change_call.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/drop_empty_event.html b/reference/drop_empty_event.html
index 8b224ddf..d31f0dfa 100644
--- a/reference/drop_empty_event.html
+++ b/reference/drop_empty_event.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/expression_string.html b/reference/expression_string.html
index af4a85cd..156efbdf 100644
--- a/reference/expression_string.html
+++ b/reference/expression_string.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/factor_new_levels_labels.html b/reference/factor_new_levels_labels.html
index e77cbe4d..48128525 100644
--- a/reference/factor_new_levels_labels.html
+++ b/reference/factor_new_levels_labels.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/factorize.html b/reference/factorize.html
index 0776b939..38b67787 100644
--- a/reference/factorize.html
+++ b/reference/factorize.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/file_export.html b/reference/file_export.html
index 7c55fd19..60caadd4 100644
--- a/reference/file_export.html
+++ b/reference/file_export.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/format_writer.html b/reference/format_writer.html
index ceaad78c..0c500843 100644
--- a/reference/format_writer.html
+++ b/reference/format_writer.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_data_packages.html b/reference/get_data_packages.html
index 1b924916..9b4b93c0 100644
--- a/reference/get_data_packages.html
+++ b/reference/get_data_packages.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_fun_options.html b/reference/get_fun_options.html
index 0bb0406b..9daf2505 100644
--- a/reference/get_fun_options.html
+++ b/reference/get_fun_options.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_label.html b/reference/get_label.html
index 6381876b..009b3b64 100644
--- a/reference/get_label.html
+++ b/reference/get_label.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_list_elements.html b/reference/get_list_elements.html
index 853e8c44..c6bf5c0b 100644
--- a/reference/get_list_elements.html
+++ b/reference/get_list_elements.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_plot_options.html b/reference/get_plot_options.html
index 22dc4442..ef85f71f 100644
--- a/reference/get_plot_options.html
+++ b/reference/get_plot_options.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_var_icon.html b/reference/get_var_icon.html
index 179b648a..9f14edc3 100644
--- a/reference/get_var_icon.html
+++ b/reference/get_var_icon.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/getfun.html b/reference/getfun.html
index 5f58134d..df9ced27 100644
--- a/reference/getfun.html
+++ b/reference/getfun.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -139,7 +139,7 @@
 <span class="r-out co"><span class="r-pr">#&gt;</span>         z$qr &lt;- NULL</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     z</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;bytecode: 0x5611878e96b8&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;bytecode: 0x5643483de740&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: namespace:stats&gt;</span>
 </code></pre></div>
     </div>
diff --git a/reference/getfun.md b/reference/getfun.md
index fa894ad0..193542ac 100644
--- a/reference/getfun.md
+++ b/reference/getfun.md
@@ -95,6 +95,6 @@ getfun("stats::lm")
 #>         z$qr <- NULL
 #>     z
 #> }
-#> <bytecode: 0x5611878e96b8>
+#> <bytecode: 0x5643483de740>
 #> <environment: namespace:stats>
 ```
diff --git a/reference/gg_theme_export.html b/reference/gg_theme_export.html
index 93e42f47..761d4272 100644
--- a/reference/gg_theme_export.html
+++ b/reference/gg_theme_export.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/gg_theme_shiny.html b/reference/gg_theme_shiny.html
index fa7e4264..08e17f6f 100644
--- a/reference/gg_theme_shiny.html
+++ b/reference/gg_theme_shiny.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ggeulerr.html b/reference/ggeulerr.html
index 8f6169cc..8e425cdb 100644
--- a/reference/ggeulerr.html
+++ b/reference/ggeulerr.html
@@ -11,7 +11,7 @@ but plots it using ggplot2"><meta property="og:image" content="https://agdamsbo.
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/grepl_fix.html b/reference/grepl_fix.html
index 58dc5642..52d9ed84 100644
--- a/reference/grepl_fix.html
+++ b/reference/grepl_fix.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/if_not_missing.html b/reference/if_not_missing.html
index 6acb2c6b..4fffa274 100644
--- a/reference/if_not_missing.html
+++ b/reference/if_not_missing.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/import-file-type.html b/reference/import-file-type.html
index 3833cf0a..a51cc368 100644
--- a/reference/import-file-type.html
+++ b/reference/import-file-type.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/import-file.html b/reference/import-file.html
index 22d52887..8d2391d1 100644
--- a/reference/import-file.html
+++ b/reference/import-file.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/import-file_module.html b/reference/import-file_module.html
index 7d3f1619..42f4f26b 100644
--- a/reference/import-file_module.html
+++ b/reference/import-file_module.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/import-globalenv.html b/reference/import-globalenv.html
index b8406216..5585bd13 100644
--- a/reference/import-globalenv.html
+++ b/reference/import-globalenv.html
@@ -9,7 +9,7 @@ Modified from datamods"><meta property="og:image" content="https://agdamsbo.gith
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index.html b/reference/index.html
index 8520119e..95610fe1 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index_embed.html b/reference/index_embed.html
index 2d68f0b8..c3f407de 100644
--- a/reference/index_embed.html
+++ b/reference/index_embed.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_any_class.html b/reference/is_any_class.html
index 7cbc8195..7a508013 100644
--- a/reference/is_any_class.html
+++ b/reference/is_any_class.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_consecutive.html b/reference/is_consecutive.html
index c94f3945..2a97f6e0 100644
--- a/reference/is_consecutive.html
+++ b/reference/is_consecutive.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_datetime.html b/reference/is_datetime.html
index bcfe21c1..29d6924b 100644
--- a/reference/is_datetime.html
+++ b/reference/is_datetime.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_identical_to_previous.html b/reference/is_identical_to_previous.html
index 3076092e..ae236c5d 100644
--- a/reference/is_identical_to_previous.html
+++ b/reference/is_identical_to_previous.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_splittable.html b/reference/is_splittable.html
index bd191ded..8ea0a95b 100644
--- a/reference/is_splittable.html
+++ b/reference/is_splittable.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_valid_redcap_url.html b/reference/is_valid_redcap_url.html
index 0c8fc1f2..f011f5f9 100644
--- a/reference/is_valid_redcap_url.html
+++ b/reference/is_valid_redcap_url.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/is_valid_token.html b/reference/is_valid_token.html
index 1122c4d1..de5c2887 100644
--- a/reference/is_valid_token.html
+++ b/reference/is_valid_token.html
@@ -7,7 +7,7 @@
 
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+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/launch_FreesearchR.html b/reference/launch_FreesearchR.html
index dcfb478a..e86b8068 100644
--- a/reference/launch_FreesearchR.html
+++ b/reference/launch_FreesearchR.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/limit_data_size.html b/reference/limit_data_size.html
index c3879f14..b9e25203 100644
--- a/reference/limit_data_size.html
+++ b/reference/limit_data_size.html
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     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/limit_log.html b/reference/limit_log.html
index f21a27cd..16ddff05 100644
--- a/reference/limit_log.html
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@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/line_break.html b/reference/line_break.html
index 89c23e43..4d4e9b16 100644
--- a/reference/line_break.html
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@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
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+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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index 48b83c65..a7fa16c1 100644
--- a/reference/show_data.html
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/simple_snake.html b/reference/simple_snake.html
index e85a5585..a35c840d 100644
--- a/reference/simple_snake.html
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/sort_by.html b/reference/sort_by.html
index cf1b699e..270c74cf 100644
--- a/reference/sort_by.html
+++ b/reference/sort_by.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/specify_qmd_format.html b/reference/specify_qmd_format.html
index 353ab86f..394bd59c 100644
--- a/reference/specify_qmd_format.html
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/split-string.html b/reference/split-string.html
index ee9a63f7..070c0bdb 100644
--- a/reference/split-string.html
+++ b/reference/split-string.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/subset_types.html b/reference/subset_types.html
index 2ba37bc3..9b24dd08 100644
--- a/reference/subset_types.html
+++ b/reference/subset_types.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/supported_functions.html b/reference/supported_functions.html
index 0c82f060..4d09745c 100644
--- a/reference/supported_functions.html
+++ b/reference/supported_functions.html
@@ -9,7 +9,7 @@ unique for each element on list.'><meta property="og:image" content="https://agd
 
     <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/supported_plots.html b/reference/supported_plots.html
index f8f14eb6..fbf754a2 100644
--- a/reference/supported_plots.html
+++ b/reference/supported_plots.html
@@ -23,7 +23,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/symmetrical_scale_x_log10.html b/reference/symmetrical_scale_x_log10.html
index a957603b..b345921c 100644
--- a/reference/symmetrical_scale_x_log10.html
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@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/tbl_merge.html b/reference/tbl_merge.html
index de4ed337..39833a56 100644
--- a/reference/tbl_merge.html
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/type_icons.html b/reference/type_icons.html
index 1b80f20a..6e01a820 100644
--- a/reference/type_icons.html
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ui_elements.html b/reference/ui_elements.html
index 433ce82a..07e17463 100644
--- a/reference/ui_elements.html
+++ b/reference/ui_elements.html
@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/unique_names.html b/reference/unique_names.html
index 39496313..17de6472 100644
--- a/reference/unique_names.html
+++ b/reference/unique_names.html
@@ -11,7 +11,7 @@ If a variable name already exists, a number will be appended."><meta property="o
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/unique_short.html b/reference/unique_short.html
index 81f7b92c..6d09b045 100644
--- a/reference/unique_short.html
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@@ -9,7 +9,7 @@ strings."><meta property="og:image" content="https://agdamsbo.github.io/Freesear
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.3</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/update-factor.html b/reference/update-factor.html
index 26207a6f..8999d8b6 100644
--- a/reference/update-factor.html
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@@ -7,7 +7,7 @@
 
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/update-variables.html b/reference/update-variables.html
index 10fbcda7..83503665 100644
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@@ -7,7 +7,7 @@
 
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/update_variables_datagrid.html b/reference/update_variables_datagrid.html
index 40e6aab6..23fb7059 100644
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/validation.html b/reference/validation.html
index f8e4c314..7ce268f6 100644
--- a/reference/validation.html
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@@ -7,7 +7,7 @@
 
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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index c51a3948..b614023b 100644
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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index cac6424d..ca98b5d0 100644
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/vectorSelectInput.html b/reference/vectorSelectInput.html
index f57b4c60..e5b4e4f9 100644
--- a/reference/vectorSelectInput.html
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@@ -7,7 +7,7 @@
 
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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index 220ad0b1..c6e36f8c 100644
--- a/reference/vertical_stacked_bars.html
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index a52aabf4..5cf5fd6d 100644
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-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.12.5</small>
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index 0b22b43d..b441ca78 100644
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index f949b1f5..8e169109 100644
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index a1020319..55d19df8 100644
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diff --git a/search.json b/search.json
index 76ede90a..dc1fcbf7 100644
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Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. However, include work’s System Libraries, general-purpose tools generally available free programs used unmodified performing activities part work. example, Corresponding Source includes interface definition files associated source files work, source code shared libraries dynamically linked subprograms work specifically designed require, intimate data communication control flow subprograms parts work. Corresponding Source need include anything users can regenerate automatically parts Corresponding Source. Corresponding Source work source code form work.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_2-basic-permissions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"2. Basic Permissions.","title":"GNU Affero General Public License","text":"rights granted License granted term copyright Program, irrevocable provided stated conditions met. License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. License gives permission license work way, invalidate permission separately received . work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. Convey individual copies object code copy written offer provide Corresponding Source. alternative allowed occasionally noncommercially, received object code offer, accord subsection 6b. Convey object code offering access designated place (gratis charge), offer equivalent access Corresponding Source way place charge. need require recipients copy Corresponding Source along object code. place copy object code network server, Corresponding Source may different server (operated third party) supports equivalent copying facilities, provided maintain clear directions next object code saying find Corresponding Source. Regardless server hosts Corresponding Source, remain obligated ensure available long needed satisfy requirements. Convey object code using peer--peer transmission, provided inform peers object code Corresponding Source work offered general public charge subsection 6d. separable portion object code, whose source code excluded Corresponding Source System Library, need included conveying object code work. “User Product” either (1) “consumer product”, means tangible personal property normally used personal, family, household purposes, (2) anything designed sold incorporation dwelling. determining whether product consumer product, doubtful cases shall resolved favor coverage. particular product received particular user, “normally used” refers typical common use class product, regardless status particular user way particular user actually uses, expects expected use, product. product consumer product regardless whether product substantial commercial, industrial non-consumer uses, unless uses represent significant mode use product. “Installation Information” User Product means methods, procedures, authorization keys, information required install execute modified versions covered work User Product modified version Corresponding Source. information must suffice ensure continued functioning modified object code case prevented interfered solely modification made. convey object code work section , , specifically use , User Product, conveying occurs part transaction right possession use User Product transferred recipient perpetuity fixed term (regardless transaction characterized), Corresponding Source conveyed section must accompanied Installation Information. requirement apply neither third party retains ability install modified object code User Product (example, work installed ROM). requirement provide Installation Information include requirement continue provide support service, warranty, updates work modified installed recipient, User Product modified installed. Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms.","title":"GNU Affero General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. Notwithstanding provision License, material add covered work, may (authorized copyright holders material) supplement terms License terms: Disclaiming warranty limiting liability differently terms sections 15 16 License; Requiring preservation specified reasonable legal notices author attributions material Appropriate Legal Notices displayed works containing ; Prohibiting misrepresentation origin material, requiring modified versions material marked reasonable ways different original version; Limiting use publicity purposes names licensors authors material; Declining grant rights trademark law use trade names, trademarks, service marks; Requiring indemnification licensors authors material anyone conveys material (modified versions ) contractual assumptions liability recipient, liability contractual assumptions directly impose licensors authors. non-permissive additional terms considered “restrictions” within meaning section 10. Program received , part , contains notice stating governed License along term restriction, may remove term. license document contains restriction permits relicensing conveying License, may add covered work material governed terms license document, provided restriction survive relicensing conveying. add terms covered work accord section, must place, relevant source files, statement additional terms apply files, notice indicating find applicable terms. Additional terms, permissive non-permissive, may stated form separately written license, stated exceptions; requirements apply either way.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_8-termination","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"8. Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies.","title":"GNU Affero General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents.","title":"GNU Affero General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom.","title":"GNU Affero General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_13-remote-network-interaction-use-with-the-gnu-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":"<one line to give the program's name and a brief idea of what it does.>     Copyright (C) <year>  <name of author>      This program is free software: you can redistribute it and/or modify     it under the terms of the GNU Affero General Public License as     published by the Free Software Foundation, either version 3 of the     License, or (at your option) any later version.      This program is distributed in the hope that it will be useful,     but WITHOUT ANY WARRANTY; without even the implied warranty of     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the     GNU Affero General Public License for more details.      You should have received a copy of the GNU Affero General Public License     along with this program.  If not, see <https://www.gnu.org/licenses/>."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, however, version 25.4.2, FreesearchR app considered functional can used data evaluation analyses. (actual list quite long growing) planned new features improvements:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"implementation-in-real-world-clinical-studies-and-projects","dir":"","previous_headings":"","what":"Implementation in real world clinical studies and projects","title":"Project roadmap","text":"really main goal whole project.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"new-features","dir":"","previous_headings":"","what":"New features:","title":"Project roadmap","text":"Merge data multiple sources (can merge sheets workbook (xls ods), allow merging several files /REDcap data) Additional plot types (bar plots, others…) Missingness analysis panel","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"expanded-options-for-regression-models","dir":"","previous_headings":"","what":"Expanded options for regression models:","title":"Project roadmap","text":"Expansion regression analysis functionality put hold now focus basic use-cases): study designs Cross-sectional data analyses Longitudinal data analyses Survival analysis regression models Stratified analyses Mixed models repeated measures Cox regression analyses Data handling Transforming data (transpose pivoting)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"improved-documentation","dir":"","previous_headings":"","what":"Improved documentation:","title":"Project roadmap","text":"Video walk-central functions","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"platform-info","dir":"Articles","previous_headings":"","what":"Platform info","title":"Session info","text":"","code":"FreesearchR:::session_data$platform |> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"libraries","dir":"Articles","previous_headings":"","what":"Libraries","title":"Session info","text":"","code":"FreesearchR:::session_data$libs|> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Jutta Mari Adelin Jørgensen. Contributor. Anne Brink Behrndtz. Contributor.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). FreesearchR: Easy data analysis clinicians. R package version 25.12.5, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{,   title = {FreesearchR: Easy data analysis for clinicians},   author = {Andreas Gammelgaard Damsbo},   year = {2025},   note = {R package version 25.12.5},   url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr-","dir":"","previous_headings":"","what":"Easy data analysis for clinicians","title":"Easy data analysis for clinicians","text":"FreesearchR simple, clinical health data exploration analysis tool democratise clinical research assisting researcher easily evaluate analyse data export publication ready results. FreesearchR free open-source, accessible web browser link. app can also run locally, please see . feedback welcome can shared GitHub issue. suggestions collaboration much welcomed. Please reach !","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"motivation","dir":"","previous_headings":"","what":"Motivation","title":"Easy data analysis for clinicians","text":"app following simple goals: help health clinician getting overview data quality improvement projects clinical research help learners get good start analysing data coding R ease quick data overview basic visualisations clinical researcher","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-locally-on-your-own-machine","dir":"","previous_headings":"","what":"Run locally on your own machine","title":"Easy data analysis for clinicians","text":"FreesearchR app can also run machine data transmitted anywhere. Blow available options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-from-r-or-rstduio","dir":"","previous_headings":"Run locally on your own machine","what":"Run from R (or RStduio)","title":"Easy data analysis for clinicians","text":"Working data R, FreesearchR quick easy tool get overview perform first explorative analyses get going. data available R session available FreesearchR app. Just follow steps get going: Requirement: need R installed possibly editor like RStudio. open R console copy/paste following code, install devtools package FreesearchR R-package dependencies:","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"running-with-docker-compose","dir":"","previous_headings":"Run locally on your own machine","what":"Running with docker compose","title":"Easy data analysis for clinicians","text":"advanced users, wanting deploy FreesearchR app run anywhere, docker image available. minimal docker_compose.yml file:","code":"services:   freesearchr:     image: ghcr.io/agdamsbo/freesearchr:latest     ports:       - '3838:3838'     restart: on-failure"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Easy data analysis for clinicians","text":"Please note FreesearchR project published Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"translators","dir":"","previous_headings":"","what":"Translators","title":"Easy data analysis for clinicians","text":"Thank much translators helped translate validate translation drafts.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"acknowledgements","dir":"","previous_headings":"","what":"Acknowledgements","title":"Easy data analysis for clinicians","text":"Like project, project never possible without great work others. sources packages used: FreesearchR app built Shiny based R. gtsummary: superb flexible way create publication-ready analytical summary tables. dreamRs: maintainers broad selection great extensions tools Shiny. easystats: performance::check_model() function central sparking idea create data analysis tool. IDEAfilter: visually appealing data filter function based {shinyDataFilter}. project written human AI-based tools. online FreesearchR app contains tracking script, transmitting minimal data usage. uploaded data transmitted anywhere. look tracking data . tracking data sent running app locally (see ).","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":null,"dir":"Reference","previous_headings":"","what":"Use the FreesearchR colors — FreesearchR_palette","title":"Use the FreesearchR colors — FreesearchR_palette","text":"Use FreesearchR colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Use the FreesearchR colors — FreesearchR_palette","text":"n number colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Use the FreesearchR colors — FreesearchR_palette","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n=7) #> [1] \"#1E4A8F\" \"#FF6F61\" \"#00C896\" \"#FFB100\" \"#CC2E25\" \"#8A4FFF\" \"#11A0EC\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\", fun = class_icons)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |>   overview_vars() |>   toastui::datagrid() |>   add_class_icon()      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Civic               30.4 #> Toyota Corolla            33.9 #> Toyota Corona             21.5 #> Dodge Challenger          15.5 #> AMC Javelin               15.2 #> Camaro Z28                13.3 #> Pontiac Firebird          19.2 #> Fiat X1-9                 27.3 #> Porsche 914-2             26.0 #> Lotus Europa              30.4 #> Ford Pantera L            15.8 #> Ferrari Dino              19.7 #> Maserati Bora             15.0 #> Volvo 142E                21.4"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Append list with named index — append_list","title":"Append list with named index — append_list","text":"Append list named index","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Append list with named index — append_list","text":"","code":"append_list(data, list, 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X1.20 #> 1              a     1 #> 2              b     2 #> 3              c     3 #> 4              d     4 #> 5              e     5 #> 6              f     6 #> 7              g     7 #> 8              h     8 #> 9              i     9 #> 10             j    10 #> 11             k    11 #> 12             l    12 #> 13             m    13 #> 14             n    14 #> 15             o    15 #> 16             p    16 #> 17             q    17 #> 18             r    18 #> 19             s    19 #> 20             t    20 #>  letters[1:20] |> append_list(ls_d, \"letters\") #> $letters #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert string of arguments to list of arguments — argsstring2list","title":"Convert string of arguments to list of arguments — argsstring2list","text":"Idea answer: https://stackoverflow.com//62979238","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert string of arguments to list of arguments — argsstring2list","text":"","code":"argsstring2list(string)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert string of arguments to list of arguments — argsstring2list","text":"string string convert list use .call","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert string of arguments to list of arguments — argsstring2list","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert string of arguments to list of arguments — argsstring2list","text":"","code":"argsstring2list(\"A=1:5,b=2:4\") #> $A #> [1] 1 2 3 4 5 #>  #> $b #> [1] 2 3 4 #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Print a flexible baseline characteristics table — baseline_table","title":"Print a flexible baseline characteristics table — baseline_table","text":"Print flexible baseline characteristics table","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Print a flexible baseline characteristics table — baseline_table","text":"","code":"baseline_table(   data,   fun.args = NULL,   fun = gtsummary::tbl_summary,   vars = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Print a flexible baseline characteristics table — baseline_table","text":"data data set fun.args list arguments passed fun function vars character vector variables include","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Print a flexible baseline characteristics table — baseline_table","text":"object standard class fun","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Print a flexible baseline characteristics table — baseline_table","text":"","code":"mtcars |> baseline_table()     Characteristic       N = 321     mpg 19.2 (15.4, 22.8)cyl     4 11 (34%)    6 7 (22%)    8 14 (44%)disp 196 (121, 334)hp 123 (96, 180)drat 3.70 (3.08, 3.92)wt 3.33 (2.54, 3.65)qsec 17.71 (16.89, 18.90)vs 14 (44%)am 13 (41%)gear     3 15 (47%)    4 12 (38%)    5 5 (16%)carb     1 7 (22%)    2 10 (31%)    3 3 (9.4%)    4 10 (31%)    6 1 (3.1%)    8 1 (3.1%)1 Median (Q1, Q3); n (%)     mtcars |> baseline_table(fun.args = list(by = \"gear\"))     Characteristic       3 N = 151       4 N = 121       5 N = 51     mpg 15.5 (14.3, 18.7) 22.8 (21.0, 28.9) 19.7 (15.8, 26.0)cyl       4 1 (6.7%) 8 (67%) 2 (40%)    6 2 (13%) 4 (33%) 1 (20%)    8 12 (80%) 0 (0%) 2 (40%)disp 318 (276, 400) 131 (79, 160) 145 (120, 301)hp 180 (150, 215) 94 (66, 110) 175 (113, 264)drat 3.08 (3.00, 3.21) 3.92 (3.90, 4.10) 3.77 (3.62, 4.22)wt 3.73 (3.44, 4.07) 2.70 (2.07, 3.17) 2.77 (2.14, 3.17)qsec 17.42 (17.02, 18.00) 18.76 (18.41, 19.69) 15.50 (14.60, 16.70)vs 3 (20%) 10 (83%) 1 (20%)am 0 (0%) 8 (67%) 5 (100%)carb       1 3 (20%) 4 (33%) 0 (0%)    2 4 (27%) 4 (33%) 2 (40%)    3 3 (20%) 0 (0%) 0 (0%)    4 5 (33%) 4 (33%) 1 (20%)    6 0 (0%) 0 (0%) 1 (20%)    8 0 (0%) 0 (0%) 1 (20%)1 Median (Q1, Q3); n (%)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":null,"dir":"Reference","previous_headings":"","what":"Get data class icons — class_icons","title":"Get data class icons — class_icons","text":"Get data class icons","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get data class icons — class_icons","text":"","code":"class_icons(x)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get data class icons — class_icons","text":"x character vector data classes","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get data class icons — class_icons","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get data class icons — class_icons","text":"","code":"\"numeric\" |> class_icons()|> str() #> List of 3 #>  $ name    : chr \"i\" #>  $ attribs :List of 3 #>   ..$ class     : chr \"fas fa-calculator\" #>   ..$ role      : chr \"presentation\" #>   ..$ aria-label: chr \"calculator icon\" #>  $ children: list() #>  - attr(*, \"class\")= chr \"shiny.tag\" #>  - attr(*, \"browsable_html\")= logi TRUE #>  - attr(*, \"html_dependencies\")=List of 1 #>   ..$ :List of 10 #>   .. ..$ name      : chr \"font-awesome\" #>   .. ..$ version   : chr \"6.5.2\" #>   .. ..$ src       :List of 1 #>   .. .. ..$ file: chr \"fontawesome\" #>   .. ..$ meta      : NULL #>   .. ..$ script    : NULL #>   .. ..$ stylesheet: chr [1:2] \"css/all.min.css\" \"css/v4-shims.min.css\" #>   .. ..$ head      : NULL #>   .. ..$ attachment: NULL #>   .. ..$ package   : chr \"fontawesome\" #>   .. ..$ all_files : logi TRUE #>   .. ..- attr(*, \"class\")= chr \"html_dependency\" mtcars |> sapply(class) |> class_icons() |> str() #> List of 11 #>  $ mpg :List of 3 #>   ..$ name    : chr \"i\" #>   ..$ attribs :List of 3 #>   .. ..$ class     : chr \"fas fa-calculator\" #>   .. ..$ role      : chr \"presentation\" #>   .. ..$ aria-label: chr \"calculator icon\" #>   ..$ children: list() #>   ..- attr(*, \"class\")= chr \"shiny.tag\" #>   ..- attr(*, \"browsable_html\")= logi TRUE #>   ..- attr(*, \"html_dependencies\")=List of 1 #>   .. ..$ :List of 10 #>   .. .. ..$ name      : chr \"font-awesome\" #>   .. .. ..$ version   : chr \"6.5.2\" #>   .. .. ..$ src       :List of 1 #>   .. .. .. ..$ file: chr 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string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":null,"dir":"Reference","previous_headings":"","what":"gsub wrapper for piping with default values for separator substituting — clean_sep","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"gsub wrapper piping default values separator substituting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"","code":"clean_sep(data, old.sep = \"[-.,/]\", new.sep = \"-\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"data character vector old.sep old separator new.sep new separator","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":null,"dir":"Reference","previous_headings":"","what":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"Written assisted Claude.ai. long possibly complicated, works","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"","code":"collapse_spaces(x, preserve_newlines = TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"x character string preserve_newlines flag preserve new lines","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"","code":"collapse_spaces(c(\"cyl\", \"di sp\",\"s e   d\",\"d  e'dl  e'\")) #> Error in collapse_spaces(c(\"cyl\", \"di sp\", \"s e   d\", \"d  e'dl  e'\")): could not find function \"collapse_spaces\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":null,"dir":"Reference","previous_headings":"","what":"A selectizeInput customized for data frames with column labels — columnSelectInput","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"Copied modified IDEAFilter package Adds option select \"none\" handled later","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"","code":"columnSelectInput(   inputId,   label,   data,   selected = \"\",   ...,   col_subset = NULL,   placeholder = \"\",   onInitialize,   none_label = \"No variable selected\",   maxItems = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"inputId passed selectizeInput label passed selectizeInput data data.frame object fields populated selected default selection ... passed selectizeInput col_subset vector containing list allowable columns select placeholder passed selectizeInput options onInitialize passed selectizeInput options none_label label \"none\" item maxItems max number items","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"selectizeInput dropdown element","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":null,"dir":"Reference","previous_headings":"","what":"Pairwise comparison of missings across covariables — compare_missings","title":"Pairwise comparison of missings across covariables — compare_missings","text":"Pairwise comparison missings across covariables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Pairwise comparison of missings across covariables — compare_missings","text":"","code":"compare_missings(   data,   by_var,   max_level = 20,   type = c(\"predictors\", \"outcome\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Pairwise comparison of missings across covariables — compare_missings","text":"data data frame by_var variable stratify missingness","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Pairwise comparison of missings across covariables — compare_missings","text":"gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":null,"dir":"Reference","previous_headings":"","what":"Contrast Text Color — contrast_text","title":"Contrast Text Color — contrast_text","text":"Calculates best contrast text color given background color.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(   background,   light_text = \"white\",   dark_text = \"black\",   threshold = 0.5,   method = \"perceived_2\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Contrast Text Color — contrast_text","text":"background hex/named color value represents background. light_text hex/named color value represents light text color. dark_text hex/named color value represents dark text color. threshold numeric value 0 1 used determine luminance threshold background color text color. method character string specifies method calculating luminance. Three different methods available: c(\"relative\",\"perceived\",\"perceived_2\") ... parameter overflow. Ignored.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Contrast Text Color — contrast_text","text":"character string contains best contrast text color.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Contrast Text Color — contrast_text","text":"function aids deciding font color print given background. function based example provided teppo: https://stackoverflow.com//66669838/21019325. different methods provided based methods outlined StackOverflow thread: https://stackoverflow.com/questions/596216/formula--determine-perceived-brightness--rgb-color","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(c(\"#F2F2F2\", \"blue\")) #> [1] \"black\" \"white\"  contrast_text(c(\"#F2F2F2\", \"blue\"), method=\"relative\") #> [1] \"black\" \"white\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Correlation pairs validation — corr_pairs_validate","title":"Correlation pairs validation — corr_pairs_validate","text":"Correlation pairs validation","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Correlation pairs validation — corr_pairs_validate","text":"","code":"corr_pairs_validate(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Correlation pairs validation — corr_pairs_validate","text":"data data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Correlation pairs validation — corr_pairs_validate","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Correlation pairs validation — corr_pairs_validate","text":"","code":"# correlation_pairs(mtcars) |> corr_pairs_validate()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":null,"dir":"Reference","previous_headings":"","what":"Determine significant correlations in the data set — correlation_pairs","title":"Determine significant correlations in the data set — correlation_pairs","text":"Determine significant correlations data set","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Determine significant correlations in the data set — correlation_pairs","text":"","code":"correlation_pairs(data, threshold = 0.8)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Determine significant correlations in the data set — correlation_pairs","text":"data data.frame threshold correlation threshold","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Determine significant correlations in the data set — correlation_pairs","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Determine significant correlations in the data set — correlation_pairs","text":"","code":"correlation_pairs(mtcars) #> Error in cor$r %>% as.table(): could not find function \"%>%\" correlation_pairs(mtcars,.9) #> Error in cor$r %>% as.table(): could not find function \"%>%\" correlation_pairs(mtcars[c(1:4),]) #> [1] var1 var2 cor  #> <0 rows> (or 0-length row.names)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":null,"dir":"Reference","previous_headings":"","what":"Create new column — create-column","title":"Create new column — create-column","text":"module allow enter expression create new column data.frame.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create new column — create-column","text":"","code":"create_column_ui(id)  create_column_server(   id,   data_r = reactive(NULL),   allowed_operations = list_allowed_operations() )  list_allowed_operations()  modal_create_column(   id,   title = i18n$t(\"Create a new column\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_create_column(   id,   title = i18n$t(\"Create a new column\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create new column — create-column","text":"id Module's ID. data_r shiny::reactive() function returning data.frame. allowed_operations list allowed operations, see details. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create new column — create-column","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Create new column — create-column","text":"User can use subset function: (, c, +, -, *, ^, %%, %/%, /, ==, >, <, !=, <=, >=, &, |, abs, sign, sqrt, ceiling, floor, trunc, cummax, cummin, cumprod, cumsum, exp, expm1, log, log10, log2, log1p, cos, cosh, sin, sinh, tan, tanh, acos, acosh, asin, asinh, atan, atanh, cospi, sinpi, tanpi, gamma, lgamma, digamma, trigamma, round, signif, max, min, range, prod, sum, , , pmin, pmax, mean, paste, paste0, substr, nchar, trimws, gsub, sub, grepl, ifelse, length, .numeric, .character, .integer, .Date, .POSIXct, .factor, factor. can add operations using allowed_operations argument,  example want allow use package lubridate, can :","code":"c(list_allowed_operations(), getNamespaceExports(\"lubridate\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create new column — create-column","text":"","code":"library(shiny) library(reactable)  ui <- fluidPage(   theme = bslib::bs_theme(version = 5L, preset = \"bootstrap\"),   shinyWidgets::html_dependency_winbox(),   tags$h2(\"Create new column\"),   fluidRow(     column(       width = 4,       create_column_ui(\"inline\"),       actionButton(\"modal\", \"Or click here to open a modal to create a column\"),       tags$br(), tags$br(),       actionButton(\"winbox\", \"Or click here to open a WinBox to create a column\")     ),     column(       width = 8,       reactableOutput(outputId = \"table\"),       verbatimTextOutput(\"code\")     )   ) ) #> Error in create_column_ui(\"inline\"): object 'i18n' not found  server <- function(input, output, session) {    rv <- reactiveValues(data = MASS::Cars93[, c(1, 3, 4, 5, 6, 10)])    # inline mode   data_inline_r <- create_column_server(     id = \"inline\",     data_r = reactive(rv$data)   )   observeEvent(data_inline_r(), rv$data <- data_inline_r())    # modal window mode   observeEvent(input$modal, modal_create_column(\"modal\"))   data_modal_r <- create_column_server(     id = \"modal\",     data_r = reactive(rv$data)   )   observeEvent(data_modal_r(), rv$data <- data_modal_r())    # WinBox window mode   observeEvent(input$winbox, winbox_create_column(\"winbox\"))   data_winbox_r <- create_column_server(     id = \"winbox\",     data_r = reactive(rv$data)   )   observeEvent(data_winbox_r(), rv$data <- data_winbox_r())    # Show result   output$table <- renderReactable({     data <- req(rv$data)     reactable(       data = data,       bordered = TRUE,       compact = TRUE,       striped = TRUE     )   })    output$code <- renderPrint({     attr(rv$data, \"code\")   }) }  if (interactive())   shinyApp(ui, server)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a baseline table — create_baseline","title":"Create a baseline table — create_baseline","text":"Create baseline table","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a baseline table — create_baseline","text":"","code":"create_baseline(   data,   ...,   by.var,   add.p = FALSE,   add.diff = FALSE,   add.overall = FALSE,   theme = c(\"jama\", \"lancet\", \"nejm\", \"qjecon\"),   detail_level = c(\"minimal\", \"extended\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a baseline table — create_baseline","text":"data data ... passed fun.arg baseline_table() .var specify stratification variable add.p add comparison/p-value add.overall add overall column theme set table theme detail_level specify detail level. Either \"minimal\" \"extended\".","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a baseline table — create_baseline","text":"gtsummary table list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a baseline table — create_baseline","text":"","code":"mtcars |> create_baseline(by.var = \"gear\", add.p = \"yes\" == \"yes\")     Characteristic       3 N = 15       4 N = 12       5 N = 5       p-value1     mpg, Median (IQR) 15.5 (14.3 – 18.7) 22.8 (21.0 – 28.9) 19.7 (15.8 – 26.0) <0.001cyl, n (%)    <0.001    4 1 (6.7) 8 (67) 2 (40)     6 2 (13) 4 (33) 1 (20)     8 12 (80) 0 (0) 2 (40) disp, Median (IQR) 318 (276 – 400) 131 (79 – 160) 145 (120 – 301) <0.001hp, Median (IQR) 180 (150 – 215) 94 (66 – 110) 175 (113 – 264) <0.001drat, Median (IQR) 3.08 (3.00 – 3.21) 3.92 (3.90 – 4.10) 3.77 (3.62 – 4.22) <0.001wt, Median (IQR) 3.73 (3.44 – 4.07) 2.70 (2.07 – 3.17) 2.77 (2.14 – 3.17) <0.001qsec, Median (IQR) 17.42 (17.02 – 18.00) 18.76 (18.41 – 19.69) 15.50 (14.60 – 16.70) 0.002vs, n (%) 3 (20) 10 (83) 1 (20) 0.001am, n (%) 0 (0) 8 (67) 5 (100) <0.001carb, n (%)    0.24    1 3 (20) 4 (33) 0 (0)     2 4 (27) 4 (33) 2 (40)     3 3 (20) 0 (0) 0 (0)     4 5 (33) 4 (33) 1 (20)     6 0 (0) 0 (0) 1 (20)     8 0 (0) 0 (0) 1 (20) 1 Kruskal-Wallis rank sum test; Fisher’s exact test     mtcars |> create_baseline(by.var = \"gear\", detail_level = \"extended\")     Characteristic       3 N = 15       4 N = 12       5 N = 5     mpg       Median (Q1, Q3) 15.5 (14.3, 18.7) 22.8 (21.0, 28.9) 19.7 (15.8, 26.0)    Mean (SD) 16.1 (3.4) 24.5 (5.3) 21.4 (6.7)    Min, Max 10.4, 21.5 17.8, 33.9 15.0, 30.4cyl, n (%)       4 1 (6.7) 8 (67) 2 (40)    6 2 (13) 4 (33) 1 (20)    8 12 (80) 0 (0) 2 (40)disp       Median (Q1, Q3) 318 (276, 400) 131 (79, 160) 145 (120, 301)    Mean (SD) 326 (95) 123 (39) 202 (115)    Min, Max 120, 472 71, 168 95, 351hp       Median (Q1, Q3) 180 (150, 215) 94 (66, 110) 175 (113, 264)    Mean (SD) 176 (48) 90 (26) 196 (103)    Min, Max 97, 245 52, 123 91, 335drat       Median (Q1, Q3) 3.08 (3.00, 3.21) 3.92 (3.90, 4.10) 3.77 (3.62, 4.22)    Mean (SD) 3.13 (0.27) 4.04 (0.31) 3.92 (0.39)    Min, Max 2.76, 3.73 3.69, 4.93 3.54, 4.43wt       Median (Q1, Q3) 3.73 (3.44, 4.07) 2.70 (2.07, 3.17) 2.77 (2.14, 3.17)    Mean (SD) 3.89 (0.83) 2.62 (0.63) 2.63 (0.82)    Min, Max 2.47, 5.42 1.62, 3.44 1.51, 3.57qsec       Median (Q1, Q3) 17.42 (17.02, 18.00) 18.76 (18.41, 19.69) 15.50 (14.60, 16.70)    Mean (SD) 17.69 (1.35) 18.97 (1.61) 15.64 (1.13)    Min, Max 15.41, 20.22 16.46, 22.90 14.50, 16.90vs, n (%)       0 12 (80) 2 (17) 4 (80)    1 3 (20) 10 (83) 1 (20)am, n (%)       0 15 (100) 4 (33) 0 (0)    1 0 (0) 8 (67) 5 (100)carb, n (%)       1 3 (20) 4 (33) 0 (0)    2 4 (27) 4 (33) 2 (40)    3 3 (20) 0 (0) 0 (0)    4 5 (33) 4 (33) 1 (20)    6 0 (0) 0 (0) 1 (20)    8 0 (0) 0 (0) 1 (20)mtcars |> create_baseline(by.var = \"gear\", detail_level = \"extended\",type = list(gtsummary::all_dichotomous() ~ \"categorical\"),theme=\"nejm\")     Characteristic       3 N = 151       4 N = 121       5 N = 51     mpg 15.5 (14.3 – 18.7) 22.8 (21.0 – 28.9) 19.7 (15.8 – 26.0)cyl       4 1 (6.7) 8 (67) 2 (40)    6 2 (13) 4 (33) 1 (20)    8 12 (80) 0 (0) 2 (40)disp 318 (276 – 400) 131 (79 – 160) 145 (120 – 301)hp 180 (150 – 215) 94 (66 – 110) 175 (113 – 264)drat 3.08 (3.00 – 3.21) 3.92 (3.90 – 4.10) 3.77 (3.62 – 4.22)wt 3.73 (3.44 – 4.07) 2.70 (2.07 – 3.17) 2.77 (2.14 – 3.17)qsec 17.42 (17.02 – 18.00) 18.76 (18.41 – 19.69) 15.50 (14.60 – 16.70)vs       0 12 (80) 2 (17) 4 (80)    1 3 (20) 10 (83) 1 (20)am       0 15 (100) 4 (33) 0 (0)    1 0 (0) 8 (67) 5 (100)carb       1 3 (20) 4 (33) 0 (0)    2 4 (27) 4 (33) 2 (40)    3 3 (20) 0 (0) 0 (0)    4 5 (33) 4 (33) 1 (20)    6 0 (0) 0 (0) 1 (20)    8 0 (0) 0 (0) 1 (20)1 Median (IQR); n (%)      create_baseline(default_parsing(mtcars), by.var = \"am\", add.p = FALSE, add.overall = FALSE, theme = \"lancet\")     Characteristic       FALSE N = 191       TRUE N = 131     mpg 17·3 (14·7 – 19·2) 22·8 (21·0 – 30·4)cyl      4 3 (16%) 8 (62%)    6 4 (21%) 3 (23%)    8 12 (63%) 2 (15%)disp 276 (168 – 360) 120 (79 – 160)hp 175 (110 – 205) 109 (66 – 113)drat 3·15 (3·07 – 3·70) 4·08 (3·85 – 4·22)wt 3·52 (3·44 – 3·85) 2·32 (1·94 – 2·78)qsec 17·82 (17·05 – 19·44) 17·02 (16·46 – 18·61)vs 7 (37%) 7 (54%)gear      3 15 (79%) 0 (0%)    4 4 (21%) 8 (62%)    5 0 (0%) 5 (38%)carb      1 3 (16%) 4 (31%)    2 6 (32%) 4 (31%)    3 3 (16%) 0 (0%)    4 7 (37%) 3 (23%)    6 0 (0%) 1 (7·7%)    8 0 (0%) 1 (7·7%)1 Median (IQR); n (%)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":null,"dir":"Reference","previous_headings":"","what":"Create summetric log ticks — create_log_tics","title":"Create summetric log ticks — create_log_tics","text":"Create summetric log ticks","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create summetric log ticks — create_log_tics","text":"","code":"create_log_tics(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create summetric log ticks — create_log_tics","text":"data numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create summetric log ticks — create_log_tics","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create summetric log ticks — create_log_tics","text":"","code":"c(sample(seq(.1, 1, .1), 3), sample(1:10, 3)) |> create_log_tics() #>  [1]  0.10  0.20  0.30  0.50  0.90  1.00  1.11  2.00  3.33  5.00 10.00"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a data overview datagrid — create_overview_datagrid","title":"Create a data overview datagrid — create_overview_datagrid","text":"Create data overview datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a data overview datagrid — create_overview_datagrid","text":"","code":"create_overview_datagrid(data, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a data overview datagrid — create_overview_datagrid","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a data overview datagrid — create_overview_datagrid","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a data overview datagrid — create_overview_datagrid","text":"","code":"mtcars |>   overview_vars() |>   create_overview_datagrid()      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theme based on unity — custom_theme","title":"Custom theme based on unity — custom_theme","text":"Custom theme based unity","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Custom theme based on unity — custom_theme","text":"","code":"custom_theme(   ...,   version = 5,   primary = FreesearchR_colors(\"primary\"),   secondary = FreesearchR_colors(\"secondary\"),   bootswatch = \"united\",   base_font = bslib::font_google(\"Montserrat\"),   heading_font = bslib::font_google(\"Public Sans\", wght = \"700\"),   code_font = bslib::font_google(\"Open Sans\"),   success = FreesearchR_colors(\"success\"),   info = FreesearchR_colors(\"info\"),   warning = FreesearchR_colors(\"warning\"),   danger = FreesearchR_colors(\"danger\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Custom theme based on unity — custom_theme","text":"... everything passed bslib::bs_theme()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Custom theme based on unity — custom_theme","text":"theme list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Convert Numeric to Factor — cut-variable","title":"Module to Convert Numeric to Factor — cut-variable","text":"module contain interface cut numeric several intervals.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Convert Numeric to Factor — cut-variable","text":"","code":"cut_variable_ui(id)  cut_variable_server(id, data_r = reactive(NULL))  modal_cut_variable(   id,   title = i18n$t(\"Convert Numeric to Factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Convert Numeric to Factor — cut-variable","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. 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cut_methods","text":"","code":"cut_methods()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_methods.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Library of cut methods with descriptions — cut_methods","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended cutting function with fall-back to the native base::cut — cut_var","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"Extended cutting function fall-back native base::cut Simplify factor top bottom n levels Subset first part string factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"","code":"cut_var(x, ...)  # Default S3 method cut_var(x, ...)  # S3 method for class 'hms' cut_var(x, breaks, ...)  # S3 method for class 'POSIXt' cut_var(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'POSIXct' cut_var(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'Date' cut_var(x, breaks = NULL, start.on.monday = TRUE, ...)  # S3 method for class 'factor' cut_var(x, breaks = NULL, type = c(\"top\", \"bottom\"), other = \"Other\", ...)  # S3 method for class 'character' cut_var(x, breaks = NULL, type = c(\"characters\", \"words\"), ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"x object inheriting class \"POSIXct\" ... passed type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"factor factor factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"","code":"readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(2) #> [1] 01:00:20 01:00:20 01:00:20 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:20 #> 03:01:20 #> 21:20:20 #> Levels: 01:00:20 03:01:20 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(\"min\") #> [1] 01:00:00 03:00:00 01:20:00 08:20:00 21:20:00 03:02:00 #> attr(,\"brks\") #> 01:00:00 #> 01:20:00 #> 03:00:00 #> 03:02:00 #> 08:20:00 #> 21:20:00 #> 21:20:20 #> Levels: 01:00:00 01:20:00 03:00:00 03:02:00 08:20:00 21:20:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(breaks = \"hour\") #> [1] 01:00:00 03:00:00 01:00:00 08:00:00 21:00:00 03:00:00 #> attr(,\"brks\") #> 01:00:00 #> 03:00:00 #> 08:00:00 #> 21:00:00 #> 21:20:20 #> Levels: 01:00:00 03:00:00 08:00:00 21:00:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(breaks = hms::as_hms(c(\"01:00:00\", \"03:01:20\", \"9:20:20\"))) #> [1] 01:00:00 01:00:00 01:00:00 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:00 #> 03:01:20 #> 09:20:20 #> Levels: 01:00:00 03:01:20 d_t <- readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) f <- d_t |> cut_var(2) readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) |> cut_var(breaks = lubridate::as_datetime(c(hms::as_hms(levels(f)), hms::as_hms(max(d_t, na.rm = TRUE) + 1))), right = FALSE) #> [1] 01:00:20 02:10:20 01:00:20 02:10:20 <NA>     #> attr(,\"brks\") #> 01:00:20 #> 02:10:20 #> 03:02:21 #> Levels: 01:00:20 02:10:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(2) #> [1] 1992-02-01 01:00:20 1992-02-01 01:00:20 1992-02-01 01:00:20 #> [4] 1992-02-01 01:00:20 1999-02-01 21:20:20 1992-02-01 01:00:20 #> Levels: 1992-02-01 01:00:20 1999-02-01 21:20:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = \"weekday\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = \"month_only\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = NULL, format = \"%A-%H\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = NULL, format = \"%W\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(2) #> [1] 1992-02-01 1992-02-01 1992-02-01 1992-02-01 1999-02-01 1992-02-01 #> Levels: 1992-02-01 1999-02-01 as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = \"weekday\") #> Error in cut.Date(x, ...): invalid specification of 'breaks' as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(format = \"%W\") #> Error in cut.Date(x, ...): argument \"breaks\" is missing, with no default mtcars$carb |>   as.factor() |>   cut_var(2) |>   table() #>  #>     2     4 Other  #>    10    10    12   mtcars$carb |>   as.factor() |>   cut_var(20, \"bottom\") |>   table() #>  #>     2     4     1 Other  #>    10    10     7     5  c(\"Sunday\", \"This week is short\") |> cut_var(breaks = 3) #> [1] Sun Thi #> attr(,\"brks\") #> [1] 3 #> Levels: Sun Thi"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-correlations","title":"Data correlations evaluation module — data-correlations","text":"Data correlations evaluation module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-correlations","text":"","code":"data_correlations_ui(id, ...)  data_correlations_server(   id,   data,   include.class = NULL,   cutoff = 0.7,   warning_str =     i18n$t(\"The following variable pairs are highly correlated: {sentence_paste(.x,and_str)}.\\nConsider excluding one {more}from the dataset to ensure variables are independent.\"),   warning_no_str = i18n$t(\"No variables have a correlation measure above the threshold.\"),   and_str = i18n$t(\"and\"),   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-correlations","text":"id id ... arguments passed toastui::datagrid data data include.class character vector classes include. Default NULL cutoff numeric warning_str Character string. Exposed allow dynamic translations warning_no_str Character string. Exposed allow dynamic translations and_strCharacter string. Exposed allow dynamic translations","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-correlations","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-missings","title":"Data correlations evaluation module — data-missings","text":"Data correlations evaluation module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-missings","text":"","code":"data_missings_ui(id, ...)  data_missings_server(id, data, max_level = 20, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-missings","text":"id Module id ... additional UI elements show table overview data data output.format output format","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-missings","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-plots","title":"Data correlations evaluation module — data-plots","text":"Data correlations evaluation module Wrapper create plot based provided type Single vertical barplot Beautiful box plot(s) Create nice box-plots Nice horizontal stacked bars (Grotta bars) Plot nice ridge plot Readying data sankey plot Beautiful sankey plot option split tertiary group Beautiful violin plot Beatiful violin plot","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-plots","text":"","code":"data_visuals_ui(id, tab_title = \"Plots\", ...)  data_visuals_server(id, data, ...)  create_plot(data, type, pri, sec, ter = NULL, ...)  plot_bar_single(   data,   pri,   sec = NULL,   style = c(\"stack\", \"dodge\", \"fill\"),   max_level = 30 )  plot_box(data, pri, sec, ter = NULL, ...)  plot_box_single(data, pri, sec = NULL, seed = 2103)  plot_hbars(data, pri, sec, ter = NULL)  plot_ridge(data, x, y, z = NULL, ...)  sankey_ready(data, pri, sec, numbers = \"count\", ...)  plot_sankey(   data,   pri,   sec,   ter = NULL,   color.group = \"pri\",   colors = NULL,   missing.level = \"Missing\" )  plot_scatter(data, pri, sec, ter = NULL)  plot_violin(data, pri, sec, ter = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-plots","text":"id Module id. (Use 'ns(\"id\")') ... passed wrap_plot_list data data frame type plot type (derived possible_plots() matches custom function) pri primary variable sec secondary variable ter tertiary variable style barplot style passed geom_bar position argument. One c(\"stack\", \"dodge\", \"fill\")","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-plots","text":"Shiny ui module shiny server module ggplot2 object ggplot object ggplot2 object ggplot object ggplot2 object ggplot2 object data.frame ggplot2 object ggplot2 object ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data correlations evaluation module — data-plots","text":"","code":"create_plot(mtcars, \"plot_violin\", \"mpg\", \"cyl\") |> attributes() #> $class #> [1] \"ggplot2::ggplot\" \"ggplot\"          \"ggplot2::gg\"     \"S7_object\"       #> [5] \"gg\"              #>  #> $S7_class #> <ggplot2::ggplot> class #> @ parent     : <ggplot2::gg> #> @ constructor: function(data, ..., layers, scales, guides, mapping, theme, coordinates, facet, layout, labels, meta, plot_env) {...} #> @ validator  : <NULL> #> @ properties : #>  $ data       : <ANY>              #>  $ layers     : <list>             #>  $ scales     : S3<ScalesList>     #>  $ guides     : S3<Guides>         #>  $ mapping    : <ggplot2::mapping> #>  $ theme      : <ggplot2::theme>   #>  $ coordinates: S3<Coord>          #>  $ facet      : S3<Facet>          #>  $ layout     : S3<Layout>         #>  $ labels     : <ggplot2::labels>  #>  $ meta       : <list>             #>  $ plot_env   : <environment>      #>  #> $data #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2 #>  #> $layers #> $layers$geom_violin #> geom_violin: na.rm = FALSE, orientation = NA, quantile_gp = list(colour = NULL, linetype = 0, linewidth = NULL) #> stat_ydensity: trim = TRUE, scale = area, na.rm = FALSE, orientation = NA, bounds = c(-Inf, Inf) #> position_dodge  #>  #> $layers$geom_point #> mapping: y = ~.data$Mean  #> geom_point: na.rm = FALSE #> stat_identity: na.rm = FALSE #> position_identity  #>  #> $layers$geom_errorbar #> mapping: y = ~.data$Mean, ymin = ~dataSummary[, 5], ymax = ~dataSummary[, 6]  #> geom_errorbar: na.rm = FALSE, orientation = NA, lineend = butt, width = 0.1 #> stat_identity: na.rm = FALSE #> position_identity  #>  #>  #> $scales #> <ggproto object: Class ScalesList, gg> #>     add: function #>     add_defaults: function #>     add_missing: function #>     backtransform_df: function #>     clone: function #>     find: function #>     get_scales: function #>     has_scale: function #>     input: function #>     map_df: function #>     n: function #>     non_position_scales: function #>     scales: list #>     set_palettes: function #>     train_df: function #>     transform_df: function #>     super:  <ggproto object: Class ScalesList, gg> #>  #> $guides #> <Guides[0] ggproto object> #>  #> <empty> #>  #> $mapping #> Aesthetic mapping:  #> * `x`    -> `.data[[\"cyl\"]]` #> * `y`    -> `.data[[\"mpg\"]]` #> * `fill` -> `.data[[\"cyl\"]]` #>  #> $theme #> <theme> List of 144 #>  $ line                            : <ggplot2::element_line> #>   ..@ colour       : chr \"black\" #>   ..@ linewidth    : num 1.09 #>   ..@ linetype     : num 1 #>   ..@ lineend      : chr \"butt\" #>   ..@ linejoin     : chr \"round\" #>   ..@ arrow        : logi FALSE #>   ..@ arrow.fill   : chr \"black\" #>   ..@ inherit.blank: logi TRUE #>  $ rect                            : <ggplot2::element_rect> #>   ..@ fill         : chr \"white\" #>   ..@ colour       : chr \"black\" #>   ..@ linewidth    : num 1.09 #>   ..@ linetype     : num 1 #>   ..@ linejoin     : chr \"round\" #>   ..@ inherit.blank: logi TRUE #>  $ text                            : <ggplot2::element_text> #>   ..@ family       : chr \"\" #>   ..@ face         : chr \"plain\" #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : chr \"black\" #>   ..@ size         : num 24 #>   ..@ hjust        : num 0.5 #>   ..@ vjust        : num 0.5 #>   ..@ angle        : num 0 #>   ..@ lineheight   : num 0.9 #>   ..@ margin       : <ggplot2::margin> num [1:4] 0 0 0 0 #>   ..@ debug        : logi FALSE #>   ..@ inherit.blank: logi TRUE #>  $ title                           : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : NULL #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : NULL #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ point                           : <ggplot2::element_point> #>   ..@ colour       : chr \"black\" #>   ..@ shape        : num 19 #>   ..@ size         : num 3.27 #>   ..@ fill         : chr \"white\" #>   ..@ stroke       : num 1.09 #>   ..@ inherit.blank: logi TRUE #>  $ polygon                         : <ggplot2::element_polygon> #>   ..@ fill         : chr \"white\" #>   ..@ colour       : chr \"black\" #>   ..@ linewidth    : num 1.09 #>   ..@ linetype     : num 1 #>   ..@ linejoin     : chr \"round\" #>   ..@ inherit.blank: logi TRUE #>  $ geom                            : <ggplot2::element_geom> #>   ..@ ink        : chr \"black\" #>   ..@ paper      : chr \"white\" #>   ..@ accent     : chr \"#3366FF\" #>   ..@ linewidth  : num 1.09 #>   ..@ borderwidth: num 1.09 #>   ..@ linetype   : int 1 #>   ..@ bordertype : 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NULL #>   ..@ inherit.blank: logi TRUE #>  $ axis.title.y.left               : NULL #>  $ axis.title.y.right              : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : NULL #>   ..@ vjust        : num 1 #>   ..@ angle        : num -90 #>   ..@ lineheight   : NULL #>   ..@ margin       : <ggplot2::margin> num [1:4] 0 0 0 6 #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ axis.text                       : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : chr \"#4D4D4DFF\" #>   ..@ size         : 'rel' num 0.8 #>   ..@ hjust        : NULL #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : NULL #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ axis.text.x                     : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : chr \"black\" #>   ..@ size         : NULL #>   ..@ hjust        : NULL #>   ..@ vjust        : num 1 #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : <ggplot2::margin> num [1:4] 4.8 0 0 0 #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi FALSE #>  $ axis.text.x.top                 : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : NULL #>   ..@ vjust        : num 0 #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : <ggplot2::margin> num [1:4] 0 0 4.8 0 #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ axis.text.x.bottom              : NULL #>  $ axis.text.y                     : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : chr \"black\" #>   ..@ size         : NULL #>   ..@ hjust        : num 1 #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : <ggplot2::margin> num [1:4] 0 4.8 0 0 #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi FALSE #>  $ axis.text.y.left                : NULL #>  $ axis.text.y.right               : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : num 0 #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : <ggplot2::margin> num [1:4] 0 0 0 4.8 #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ axis.text.theta                 : NULL #>  $ axis.text.r                     : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : num 0.5 #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : <ggplot2::margin> num [1:4] 0 4.8 0 4.8 #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ axis.ticks                      : <ggplot2::element_line> #>   ..@ colour       : chr \"black\" #>   ..@ linewidth    : NULL #>   ..@ linetype     : NULL #>   ..@ lineend      : NULL #>   ..@ linejoin     : NULL #>   ..@ arrow        : logi FALSE #>   ..@ arrow.fill   : chr \"black\" #>   ..@ inherit.blank: logi FALSE #>  $ axis.ticks.x                    : NULL #>  $ axis.ticks.x.top                : NULL #>  $ axis.ticks.x.bottom             : NULL #>  $ axis.ticks.y                    : NULL #>  $ axis.ticks.y.left               : NULL #>  $ axis.ticks.y.right              : NULL #>  $ axis.ticks.theta                : NULL #>  $ axis.ticks.r                    : NULL #>  $ axis.minor.ticks.x.top          : NULL #>  $ axis.minor.ticks.x.bottom       : NULL #>  $ axis.minor.ticks.y.left         : NULL #>  $ axis.minor.ticks.y.right        : NULL #>  $ axis.minor.ticks.theta          : NULL #>  $ axis.minor.ticks.r              : NULL #>  $ axis.ticks.length               : 'rel' num 0.5 #>  $ axis.ticks.length.x             : NULL #>  $ axis.ticks.length.x.top         : NULL #>  $ axis.ticks.length.x.bottom      : NULL #>  $ axis.ticks.length.y             : NULL #>  $ axis.ticks.length.y.left        : NULL #>  $ axis.ticks.length.y.right       : NULL #>  $ axis.ticks.length.theta         : NULL #>  $ axis.ticks.length.r             : NULL #>  $ axis.minor.ticks.length         : 'rel' num 0.75 #>  $ axis.minor.ticks.length.x       : NULL #>  $ axis.minor.ticks.length.x.top   : NULL #>  $ axis.minor.ticks.length.x.bottom: NULL #>  $ axis.minor.ticks.length.y       : NULL #>  $ axis.minor.ticks.length.y.left  : NULL #>  $ axis.minor.ticks.length.y.right : NULL #>  $ axis.minor.ticks.length.theta   : NULL #>  $ axis.minor.ticks.length.r       : NULL #>  $ axis.line                       : <ggplot2::element_line> #>   ..@ colour       : chr \"black\" #>   ..@ linewidth    : NULL #>   ..@ linetype     : NULL #>   ..@ lineend      : NULL #>   ..@ linejoin     : NULL #>   ..@ arrow        : logi FALSE #>   ..@ arrow.fill   : chr \"black\" #>   ..@ inherit.blank: logi FALSE #>  $ axis.line.x                     : NULL #>  $ axis.line.x.top                 : NULL #>  $ axis.line.x.bottom              : NULL #>  $ axis.line.y                     : NULL #>  $ axis.line.y.left                : NULL #>  $ axis.line.y.right               : NULL #>  $ axis.line.theta                 : NULL #>  $ axis.line.r                     : NULL #>  $ legend.background               : <ggplot2::element_rect> #>   ..@ fill         : NULL #>   ..@ colour       : logi NA #>   ..@ linewidth    : NULL #>   ..@ linetype     : NULL #>   ..@ linejoin     : NULL #>   ..@ inherit.blank: logi TRUE #>  $ legend.margin                   : NULL #>  $ legend.spacing                  : 'rel' num 2 #>  $ legend.spacing.x                : NULL #>  $ legend.spacing.y                : NULL #>  $ legend.key                      : NULL #>  $ legend.key.size                 : 'simpleUnit' num 1.2lines #>   ..- attr(*, \"unit\")= int 3 #>  $ legend.key.height               : NULL #>  $ legend.key.width                : NULL #>  $ legend.key.spacing              : NULL #>  $ legend.key.spacing.x            : NULL #>  $ legend.key.spacing.y            : NULL #>  $ legend.key.justification        : NULL #>  $ legend.frame                    : NULL #>  $ legend.ticks                    : NULL #>  $ legend.ticks.length             : 'rel' num 0.2 #>  $ legend.axis.line                : NULL #>  $ legend.text                     : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : 'rel' num 0.8 #>   ..@ hjust        : NULL #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : NULL #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ legend.text.position            : NULL #>  $ legend.title                    : <ggplot2::element_text> #>   ..@ family       : NULL #>   ..@ face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : num 0 #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : NULL #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ legend.title.position           : NULL #>  $ legend.position                 : chr \"none\" #>  $ legend.position.inside          : NULL #>  $ legend.direction                : NULL #>  $ legend.byrow                    : NULL #>  $ legend.justification            : chr \"center\" #>  $ legend.justification.top        : NULL #>  $ legend.justification.bottom     : NULL #>  $ legend.justification.left       : NULL #>  $ legend.justification.right      : NULL #>  $ legend.justification.inside     : NULL #>   [list output truncated] #>  @ complete: logi TRUE #>  @ validate: logi TRUE #>  #> $coordinates #> <ggproto object: Class CoordCartesian, Coord, gg> #>     aspect: function #>     backtransform_range: function #>     clip: on #>     default: TRUE #>     distance: function #>     draw_panel: function #>     expand: TRUE #>     is_free: function #>     is_linear: function #>     labels: function #>     limits: list #>     modify_scales: function #>     range: function #>     ratio: NULL #>     render_axis_h: function #>     render_axis_v: function #>     render_bg: function #>     render_fg: function #>     reverse: none #>     setup_data: function #>     setup_layout: function #>     setup_panel_guides: function #>     setup_panel_params: function #>     setup_params: function #>     train_panel_guides: function #>     transform: function #>     super:  <ggproto object: Class CoordCartesian, Coord, gg> #>  #> $facet #> <ggproto object: Class FacetNull, Facet, gg> #>     attach_axes: function #>     attach_strips: function #>     compute_layout: function #>     draw_back: function #>     draw_front: function #>     draw_labels: function #>     draw_panel_content: function #>     draw_panels: function #>     finish_data: function #>     format_strip_labels: function #>     init_gtable: function #>     init_scales: function #>     map_data: function #>     params: list #>     set_panel_size: function #>     setup_data: function #>     setup_panel_params: function #>     setup_params: function #>     shrink: TRUE #>     train_scales: function #>     vars: function #>     super:  <ggproto object: Class FacetNull, Facet, gg> #>  #> $layout #> <ggproto object: Class Layout, gg> #>     coord: NULL #>     coord_params: list #>     facet: NULL #>     facet_params: list #>     finish_data: function #>     get_scales: function #>     layout: NULL #>     map_position: function #>     panel_params: NULL #>     panel_scales_x: NULL #>     panel_scales_y: NULL #>     render: function #>     render_labels: function #>     reset_scales: function #>     resolve_label: function #>     setup: function #>     setup_panel_guides: function #>     setup_panel_params: function #>     train_position: function #>     super:  <ggproto object: Class Layout, gg> #>  #> $labels #> <ggplot2::labels> List of 2 #>  $ x: chr \"cyl\" #>  $ y: chr \"mpg\" #>  #> $meta #> list() #>  #> $plot_env #> <environment: 0x561187f34788> #>  #> $code #> FreesearchR::plot_violin(pri = \"mpg\", sec = \"cyl\", ter = NULL) #>  mtcars |>   dplyr::mutate(cyl = factor(cyl), am = factor(am)) |>   plot_bar_single(pri = \"cyl\", sec = \"am\", style = \"fill\")   mtcars |>   dplyr::mutate(cyl = factor(cyl), am = factor(am)) |>   plot_bar_single(pri = \"cyl\", style = \"stack\")  mtcars |> plot_box(pri = \"mpg\", sec = \"gear\")  mtcars |> plot_box(pri = \"mpg\", sec=\"cyl\")  mtcars |>   default_parsing() |>   plot_box(pri = \"mpg\", sec = \"cyl\", ter = \"gear\") #> Error in plot_box(default_parsing(mtcars), pri = \"mpg\", sec = \"cyl\", ter = \"gear\"): object 'i18n' not found mtcars |>   default_parsing() |>   plot_box(pri = \"mpg\", sec = \"cyl\", ter = \"gear\",axis.font.family=\"mono\") #> Error in plot_box(default_parsing(mtcars), pri = \"mpg\", sec = \"cyl\", ter = \"gear\",     axis.font.family = \"mono\"): object 'i18n' not found mtcars |> plot_box_single(\"mpg\")  mtcars |> plot_box_single(\"mpg\",\"cyl\")  gtsummary::trial |> plot_box_single(\"age\",\"trt\") #> Warning: Removed 11 rows containing non-finite outside the scale range #> (`stat_boxplot()`). #> Warning: Removed 11 rows containing missing values or values outside the scale range #> (`geom_point()`).  mtcars |> plot_hbars(pri = \"carb\", sec = \"cyl\") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |> plot_hbars(pri = \"carb\", sec = \"cyl\", ter=\"am\") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |> plot_hbars(pri = \"carb\", sec = NULL) #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |>   default_parsing() |>   plot_ridge(x = \"mpg\", y = \"cyl\") #> Picking joint bandwidth of 1.38  mtcars |> plot_ridge(x = \"mpg\", y = \"cyl\", z = \"gear\") #> Picking joint bandwidth of 1.52 #> Warning: The following aesthetics were dropped during statistical transformation: y and #> fill. #> ℹ This can happen when ggplot fails to infer the correct grouping structure in #>   the data. #> ℹ Did you forget to specify a `group` aesthetic or to convert a numerical #>   variable into a factor? #> Error in ggridges::geom_density_ridges(): Problem while setting up geom. #> ℹ Error occurred in the 1st layer. #> Caused by error in `compute_geom_1()`: #> ! `geom_density_ridges()` requires the following missing aesthetics: y. ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = sample(c(letters[1:4], NA), 100, TRUE, prob = c(rep(.23, 4), .08))) ds |> sankey_ready(\"first\", \"last\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx          ly          #>    <fct> <fct> <int>  <int>  <int> <fct>       <fct>       #>  1 d     d        11     36     18 \"d\\n(n=36)\" \"d\\n(n=18)\" #>  2 d     a        11     36     30 \"d\\n(n=36)\" \"a\\n(n=30)\" #>  3 d     b         6     36     25 \"d\\n(n=36)\" \"b\\n(n=25)\" #>  4 d     c         8     36     22 \"d\\n(n=36)\" \"c\\n(n=22)\" #>  5 c     d         3     24     18 \"c\\n(n=24)\" \"d\\n(n=18)\" #>  6 c     a         7     24     30 \"c\\n(n=24)\" \"a\\n(n=30)\" #>  7 c     b        10     24     25 \"c\\n(n=24)\" \"b\\n(n=25)\" #>  8 c     c         1     24     22 \"c\\n(n=24)\" \"c\\n(n=22)\" #>  9 c     NA        3     24      5 \"c\\n(n=24)\"  NA         #> 10 b     d         2     17     18 \"b\\n(n=17)\" \"d\\n(n=18)\" #> 11 b     a         4     17     30 \"b\\n(n=17)\" \"a\\n(n=30)\" #> 12 b     b         3     17     25 \"b\\n(n=17)\" \"b\\n(n=25)\" #> 13 b     c         7     17     22 \"b\\n(n=17)\" \"c\\n(n=22)\" #> 14 b     NA        1     17      5 \"b\\n(n=17)\"  NA         #> 15 a     d         2     23     18 \"a\\n(n=23)\" \"d\\n(n=18)\" #> 16 a     a         8     23     30 \"a\\n(n=23)\" \"a\\n(n=30)\" #> 17 a     b         6     23     25 \"a\\n(n=23)\" \"b\\n(n=25)\" #> 18 a     c         6     23     22 \"a\\n(n=23)\" \"c\\n(n=22)\" #> 19 a     NA        1     23      5 \"a\\n(n=23)\"  NA         ds |> sankey_ready(\"first\", \"last\", numbers = \"percentage\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx         ly         #>    <fct> <fct> <int>  <int>  <int> <fct>      <fct>      #>  1 d     d        11     36     18 \"d\\n(36%)\" \"d\\n(18%)\" #>  2 d     a        11     36     30 \"d\\n(36%)\" \"a\\n(30%)\" #>  3 d     b         6     36     25 \"d\\n(36%)\" \"b\\n(25%)\" #>  4 d     c         8     36     22 \"d\\n(36%)\" \"c\\n(22%)\" #>  5 c     d         3     24     18 \"c\\n(24%)\" \"d\\n(18%)\" #>  6 c     a         7     24     30 \"c\\n(24%)\" \"a\\n(30%)\" #>  7 c     b        10     24     25 \"c\\n(24%)\" \"b\\n(25%)\" #>  8 c     c         1     24     22 \"c\\n(24%)\" \"c\\n(22%)\" #>  9 c     NA        3     24      5 \"c\\n(24%)\"  NA        #> 10 b     d         2     17     18 \"b\\n(17%)\" \"d\\n(18%)\" #> 11 b     a         4     17     30 \"b\\n(17%)\" \"a\\n(30%)\" #> 12 b     b         3     17     25 \"b\\n(17%)\" \"b\\n(25%)\" #> 13 b     c         7     17     22 \"b\\n(17%)\" \"c\\n(22%)\" #> 14 b     NA        1     17      5 \"b\\n(17%)\"  NA        #> 15 a     d         2     23     18 \"a\\n(23%)\" \"d\\n(18%)\" #> 16 a     a         8     23     30 \"a\\n(23%)\" \"a\\n(30%)\" #> 17 a     b         6     23     25 \"a\\n(23%)\" \"b\\n(25%)\" #> 18 a     c         6     23     22 \"a\\n(23%)\" \"c\\n(22%)\" #> 19 a     NA        1     23      5 \"a\\n(23%)\"  NA        data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   sankey_ready(\"first\", \"last\") #> # A tibble: 8 × 7 #>   first last      n gx.sum gy.sum lx          ly              #>   <fct> <fct> <int>  <int>  <int> <fct>       <fct>           #> 1 b     FALSE    16     29     66 \"b\\n(n=29)\" \"FALSE\\n(n=66)\" #> 2 b     TRUE     13     29     34 \"b\\n(n=29)\" \"TRUE\\n(n=34)\"  #> 3 a     FALSE    18     25     66 \"a\\n(n=25)\" \"FALSE\\n(n=66)\" #> 4 a     TRUE      7     25     34 \"a\\n(n=25)\" \"TRUE\\n(n=34)\"  #> 5 d     FALSE    13     20     66 \"d\\n(n=20)\" \"FALSE\\n(n=66)\" #> 6 d     TRUE      7     20     34 \"d\\n(n=20)\" \"TRUE\\n(n=34)\"  #> 7 c     FALSE    19     26     66 \"c\\n(n=26)\" \"FALSE\\n(n=66)\" #> 8 c     TRUE      7     26     34 \"c\\n(n=26)\" \"TRUE\\n(n=34)\"  ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey(\"first\", \"last\") #> Loading required package: ggplot2  ds |> plot_sankey(\"first\", \"last\", color.group = \"sec\")  ds |> plot_sankey(\"first\", \"last\", ter = \"g\", color.group = \"sec\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  mtcars |>   default_parsing() |>   plot_sankey(\"cyl\", \"gear\", \"am\", color.group = \"pri\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  ## In this case, the last plot as the secondary variable in wrong order ## Dont know why... mtcars |>   default_parsing() |>   plot_sankey(\"cyl\", \"gear\", \"vs\", color.group = \"pri\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  mtcars |> plot_scatter(pri = \"mpg\", sec = \"wt\") #> Ignoring unknown labels: #> • legend.title : \"\"  mtcars |> plot_violin(pri = \"mpg\", sec = \"cyl\", ter = \"gear\") #> Error in plot_violin(mtcars, pri = \"mpg\", sec = \"cyl\", ter = \"gear\"): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":null,"dir":"Reference","previous_headings":"","what":"Data summary module — data-summary","title":"Data summary module — data-summary","text":"Data summary module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data summary module — data-summary","text":"","code":"data_summary_ui(id)  data_summary_server(id, data, color.main, color.sec, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data summary module — data-summary","text":"id Module id. (Use 'ns(\"id\")') data data color.main main color color.sec secondary color ... arguments passed create_overview_datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data summary module — data-summary","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":null,"dir":"Reference","previous_headings":"","what":"Ultra short data dascription — data_description","title":"Ultra short data dascription — data_description","text":"Ultra short data dascription","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Ultra short data dascription — data_description","text":"","code":"data_description(data, data_text = \"Data\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Ultra short data dascription — data_description","text":"data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Ultra short data dascription — data_description","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Ultra short data dascription — data_description","text":"","code":"data.frame(   sample(1:8, 20, TRUE),   sample(c(1:8, NA), 20, TRUE) ) |> data_description() #> Error in data_description(data.frame(sample(1:8, 20, TRUE), sample(c(1:8,     NA), 20, TRUE))): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":null,"dir":"Reference","previous_headings":"","what":"Data summary for printing visual summary — data_summary_gather","title":"Data summary for printing visual summary — data_summary_gather","text":"Data summary printing visual summary","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data summary for printing visual summary — data_summary_gather","text":"","code":"data_summary_gather(   data,   summary.fun = class,   palette.fun = viridisLite::viridis,   na.label = \"NA\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data summary for printing visual summary — data_summary_gather","text":"data data.frame summary.fun fun summarising palette.fun optionally use specific palette functions. First argument length. na.label label NA ... overflow","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data summary for printing visual summary — data_summary_gather","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data summary for printing visual summary — data_summary_gather","text":"","code":"mtcars |> data_summary_gather() |> names() #> [1] \"data\"        \"colors\"      \"labels\"      \"summary.fun\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":null,"dir":"Reference","previous_headings":"","what":"Data type assessment. — data_type","title":"Data type assessment. — data_type","text":"overall native typeof. used assess meaningful \"clinical\" data type.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data type assessment. — data_type","text":"","code":"data_type(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data type assessment. — data_type","text":"data vector data.frame. data frame, column evaluated.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data type assessment. — data_type","text":"outcome type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data type assessment. — data_type","text":"","code":"mtcars |>   default_parsing() |>   lapply(data_type) #> $mpg #> [1] \"continuous\" #>  #> $cyl #> [1] \"categorical\" #>  #> $disp #> [1] \"continuous\" #>  #> $hp #> [1] \"continuous\" #>  #> $drat #> [1] \"continuous\" #>  #> $wt #> [1] \"continuous\" #>  #> $qsec #> [1] \"continuous\" #>  #> $vs #> [1] \"dichotomous\" #>  #> $am #> [1] \"dichotomous\" #>  #> $gear #> [1] \"categorical\" #>  #> $carb #> [1] \"categorical\" #>  mtcars |>   default_parsing() |>   data_type() #>           mpg           cyl          disp            hp          drat  #>  \"continuous\" \"categorical\"  \"continuous\"  \"continuous\"  \"continuous\"  #>            wt          qsec            vs            am          gear  #>  \"continuous\"  \"continuous\" \"dichotomous\" \"dichotomous\" \"categorical\"  #>          carb  #> \"categorical\"  c(1, 2) |> data_type() #> [1] \"dichotomous\" 1 |> data_type() #> [1] \"monotone\" c(rep(NA, 10)) |> data_type() #> [1] \"empty\" sample(1:100, 50) |> data_type() #> [1] \"continuous\" factor(letters[1:20]) |> data_type() #> [1] \"categorical\" as.Date(1:20) |> data_type() #> [1] \"datetime\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Filter function to filter data set by variable type — data_type_filter","title":"Filter function to filter data set by variable type — data_type_filter","text":"Filter function filter data set variable type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Filter function to filter data set by variable type — data_type_filter","text":"","code":"data_type_filter(data, type)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Filter function to filter data set by variable type — data_type_filter","text":"data data frame type vector data types (recognised: data_types)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Filter function to filter data set by variable type — data_type_filter","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Filter function to filter data set by variable type — data_type_filter","text":"","code":"default_parsing(mtcars) |>   data_type_filter(type = c(\"categorical\", \"continuous\")) |>   attributes() #> $names #> [1] \"mpg\"  \"cyl\"  \"disp\" \"hp\"   \"drat\" \"wt\"   \"qsec\" \"gear\" \"carb\" #>  #> $row.names #>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 #> [26] 26 27 28 29 30 31 32 #>  #> $class #> [1] \"tbl_df\"     \"tbl\"        \"data.frame\" #>  #> $code #> FreesearchR::data_type_filter(type = c(\"categorical\", \"continuous\" #> )) #>  default_parsing(mtcars) |>   data_type_filter(type = NULL) |>   attributes() #> $class #> [1] \"tbl_df\"     \"tbl\"        \"data.frame\" #>  #> $row.names #>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 #> [26] 26 27 28 29 30 31 32 #>  #> $names #>  [1] \"mpg\"  \"cyl\"  \"disp\" \"hp\"   \"drat\" \"wt\"   \"qsec\" \"vs\"   \"am\"   \"gear\" #> [11] \"carb\" #>  if (FALSE) { # \\dontrun{ default_parsing(mtcars) |> data_type_filter(type = c(\"test\", \"categorical\", \"continuous\")) } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Recognised data types from data_type — data_types","title":"Recognised data types from data_type — data_types","text":"Recognised data types data_type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Recognised data types from data_type — data_types","text":"","code":"data_types()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Recognised data types from data_type — data_types","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Recognised data types from data_type — data_types","text":"","code":"data_types() #> $empty #> $empty$descr #> [1] \"Variable of all NAs\" #>  #> $empty$classes #> [1] \"Any class\" #>  #>  #> $monotone #> $monotone$descr #> [1] \"Variable with only one unique value\" #>  #> $monotone$classes #> [1] \"Any class\" #>  #>  #> $dichotomous #> $dichotomous$descr #> [1] \"Variable with only two unique values\" #>  #> $dichotomous$classes #> [1] \"Any class\" #>  #>  #> $categorical #> $categorical$descr #> [1] \"Factor variable\" #>  #> $categorical$classes #> [1] \"factor (ordered or unordered)\" #>  #>  #> $text #> $text$descr #> [1] \"Character variable\" #>  #> $text$classes #> [1] \"character\" #>  #>  #> $datetime #> $datetime$descr #> [1] \"Variable of time, date or datetime values\" #>  #> $datetime$classes #> [1] \"hms, Date, POSIXct and POSIXt\" #>  #>  #> $continuous #> $continuous$descr #> [1] \"Numeric variable\" #>  #> $continuous$classes #> [1] \"numeric, integer or double\" #>  #>  #> $unknown #> $unknown$descr #> [1] \"Anything not falling within the previous\" #>  #> $unknown$classes #> [1] \"Any other class\" #>  #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.html","id":null,"dir":"Reference","previous_headings":"","what":"Defaults qmd formats — default_format_arguments","title":"Defaults qmd formats — default_format_arguments","text":"Defaults qmd formats","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Defaults qmd formats — default_format_arguments","text":"","code":"default_format_arguments()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Defaults qmd formats — default_format_arguments","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":null,"dir":"Reference","previous_headings":"","what":"Default data parsing — default_parsing","title":"Default data parsing — default_parsing","text":"Default data parsing","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Default data parsing — default_parsing","text":"","code":"default_parsing(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Default data parsing — default_parsing","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Default data parsing — default_parsing","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Default data parsing — default_parsing","text":"","code":"mtcars |> str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ... mtcars |>   default_parsing() |>   str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : Factor w/ 3 levels \"4\",\"6\",\"8\": 2 2 1 2 3 2 3 1 1 2 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : logi [1:32] FALSE FALSE TRUE TRUE FALSE TRUE ... #>  $ am  : logi [1:32] TRUE TRUE TRUE FALSE FALSE FALSE ... #>  $ gear: Factor w/ 3 levels \"3\",\"4\",\"5\": 2 2 2 1 1 1 1 2 2 2 ... #>  $ carb: Factor w/ 6 levels \"1\",\"2\",\"3\",\"4\",..: 4 4 1 1 2 1 4 2 2 4 ... head(starwars, 5) |> str() #> Error: object 'starwars' not found starwars |>   default_parsing() |>   head(5) |>   str() #> Error: object 'starwars' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":null,"dir":"Reference","previous_headings":"","what":"Detect delimiters in string based on allowed delimiters — detect_delimiter","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"Accepts repeat delimiters includes surrounding whitespace","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"","code":"detect_delimiter(data, delimiters = c(\"_\", \"-\", \";\", \"\\n\", \",\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"delimiters allowed delimiters text character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"","code":"sapply(c(\"Walk - run\", \"Sel__Re\", \"what;now\"), detect_delimiter) #> Walk - run    Sel__Re   what;now  #>      \" - \"       \"__\"        \";\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Dimensions validation — dim_change_call","title":"Dimensions validation — dim_change_call","text":"Dimensions validation","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Dimensions validation — dim_change_call","text":"","code":"dim_change_call(before, after, fun)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Dimensions validation — dim_change_call","text":"data data fun dimension function. ncol nrow","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Dimensions validation — dim_change_call","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop empty events from REDCap export — drop_empty_event","title":"Drop empty events from REDCap export — drop_empty_event","text":"Drop empty events REDCap export","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop empty events from REDCap export — drop_empty_event","text":"","code":"drop_empty_event(data, event = \"redcap_event_name\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop empty events from REDCap export — drop_empty_event","text":"data data event \"redcap_event_name\", \"redcap_repeat_instrument\" \"redcap_repeat_instance\"","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Drop empty events from REDCap export — drop_empty_event","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":null,"dir":"Reference","previous_headings":"","what":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"Deparses expression string, substitutes native pipe adds assign","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"","code":"expression_string(data, assign.str = \"\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"data expression","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"","code":"list(   as.symbol(paste0(\"mtcars$\", \"mpg\")),   rlang::call2(.fn = \"select\", !!!list(c(\"cyl\", \"di  sp\")), .ns = \"dplyr\"),   rlang::call2(.fn = \"default_parsing\", .ns = \"FreesearchR\") ) |>   merge_expression() |>   expression_string() #> [1] \"mtcars$mpg |>dplyr::select(c('cyl', 'di  sp')) |>FreesearchR::default_parsing()\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"Simple function apply new levels /labels factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"","code":"factor_new_levels_labels(   data,   variable,   new_variable = TRUE,   new_levels = NULL,   new_labels = NULL,   ignore = \"New label\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"variable factor variable ignore character string ignore new labels new_level new levels, length original new_label new labels, length original","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"","code":"data_n <- mtcars data_n$cyl <- factor(data_n$cyl) factor_new_levels_labels(data_n, \"cyl\", new_labels = c(\"four\", \"New label\", \"New label\")) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2 #>                     cyl_updated #> Mazda RX4                     6 #> Mazda RX4 Wag                 6 #> Datsun 710                 four #> Hornet 4 Drive                6 #> Hornet Sportabout             8 #> Valiant                       6 #> Duster 360                    8 #> Merc 240D                  four #> Merc 230                   four #> Merc 280                      6 #> Merc 280C                     6 #> Merc 450SE                    8 #> Merc 450SL                    8 #> Merc 450SLC                   8 #> Cadillac Fleetwood            8 #> Lincoln Continental           8 #> Chrysler Imperial             8 #> Fiat 128                   four #> Honda Civic                four #> Toyota Corolla             four #> Toyota Corona              four #> Dodge Challenger              8 #> AMC Javelin                   8 #> Camaro Z28                    8 #> Pontiac Firebird              8 #> Fiat X1-9                  four #> Porsche 914-2              four #> Lotus Europa               four #> Ford Pantera L                8 #> Ferrari Dino                  6 #> Maserati Bora                 8 #> Volvo 142E                 four"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":null,"dir":"Reference","previous_headings":"","what":"Factorize variables in data.frame — factorize","title":"Factorize variables in data.frame — factorize","text":"Factorize variables data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Factorize variables in data.frame — factorize","text":"","code":"factorize(data, vars)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Factorize variables in data.frame — factorize","text":"data data.frame vars variables force factorize","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Factorize variables in data.frame — factorize","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Factorize variables in data.frame — factorize","text":"","code":"factorize(mtcars, names(mtcars)) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4             21   6   160 110  3.9  2.62 16.46  0  1    4    4 #> Mazda RX4 Wag         21   6   160 110  3.9 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4   108  93 3.85  2.32 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6   258 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8   360 175 3.15  3.44 17.02  0  0    3    2 #> Valiant             18.1   6   225 105 2.76  3.46 20.22  1  0    3    1 #> Duster 360          14.3   8   360 245 3.21  3.57 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69  3.19    20  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92  3.15  22.9  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92  3.44  18.3  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92  3.44  18.9  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07  4.07  17.4  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07  3.73  17.6  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07  3.78    18  0  0    3    3 #> Cadillac Fleetwood  10.4   8   472 205 2.93  5.25 17.98  0  0    3    4 #> Lincoln Continental 10.4   8   460 215    3 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8   440 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08   2.2 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835  19.9  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97  3.7 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8   318 150 2.76  3.52 16.87  0  0    3    2 #> AMC Javelin         15.2   8   304 150 3.15 3.435  17.3  0  0    3    2 #> Camaro Z28          13.3   8   350 245 3.73  3.84 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8   400 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4    79  66 4.08 1.935  18.9  1  1    4    1 #> Porsche 914-2         26   4 120.3  91 4.43  2.14  16.7  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513  16.9  1  1    5    2 #> Ford Pantera L      15.8   8   351 264 4.22  3.17  14.5  0  1    5    4 #> Ferrari Dino        19.7   6   145 175 3.62  2.77  15.5  0  1    5    6 #> Maserati Bora         15   8   301 335 3.54  3.57  14.6  0  1    5    8 #> Volvo 142E          21.4   4   121 109 4.11  2.78  18.6  1  1    4    2"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":null,"dir":"Reference","previous_headings":"","what":"Title — file_export","title":"Title — file_export","text":"Title","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Title — file_export","text":"","code":"file_export(data, output.format = c(\"df\", \"teal\", \"list\"), filename, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Title — file_export","text":"data data output.format output filename filename ... passed ","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Title — file_export","text":"data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":null,"dir":"Reference","previous_headings":"","what":"Merges list of named arguments for qmd header generation — format_writer","title":"Merges list of named arguments for qmd header generation — format_writer","text":"Merges list named arguments qmd header generation","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merges list of named arguments for qmd header generation — format_writer","text":"","code":"format_writer(data, name)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merges list of named arguments for qmd header generation — format_writer","text":"data vector name name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merges list of named arguments for qmd header generation — format_writer","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":null,"dir":"Reference","previous_headings":"","what":"Get packages containing datasets — get_data_packages","title":"Get packages containing datasets — get_data_packages","text":"Get packages containing datasets","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get packages containing datasets — get_data_packages","text":"","code":"get_data_packages()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get packages containing datasets — get_data_packages","text":"character vector packages names","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get packages containing datasets — get_data_packages","text":"","code":"if (interactive()) {    get_data_packages()  }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_fun_options","title":"Get the function options based on the selected function description — get_fun_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"get_fun_options(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_fun_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_fun_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_functions(design = \"cross-sectional\") |>   (\\(.x){     .x[[1]]   })() |>   get_fun_options() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Print label, and if missing print variable name for plots — get_label","title":"Print label, and if missing print variable name for plots — get_label","text":"Print label, missing print variable name plots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Print label, and if missing print variable name for plots — get_label","text":"","code":"get_label(data, var = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Print label, and if missing print variable name for plots — get_label","text":"data vector data frame var variable name. Optional.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Print label, and if missing print variable name for plots — get_label","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Print label, and if missing print variable name for plots — get_label","text":"","code":"mtcars |> get_label(var = \"mpg\") #> [1] \"mpg\" mtcars |> get_label() #> [1] \"mtcars\" mtcars$mpg |> get_label() #> [1] \"mtcars$mpg\" gtsummary::trial |> get_label(var = \"trt\") #> [1] \"Chemotherapy Treatment\" gtsummary::trial$trt |> get_label() #> [1] \"Chemotherapy Treatment\" 1:10 |> get_label() #> [1] \"1:10\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset elements from list of lists — get_list_elements","title":"Subset elements from list of lists — get_list_elements","text":"General function sub-setting details stored list dictionaries.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset elements from list of lists — get_list_elements","text":"","code":"get_list_elements(name, element, dict = cut_methods())"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Subset elements from list of lists — get_list_elements","text":"name list name lookup element element get dict dictionary use","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Subset elements from list of lists — get_list_elements","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Subset elements from list of lists — get_list_elements","text":"","code":"get_list_elements(c(\"top\", \"bottom\"), \"descr\") #> Error in cut_methods(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_plot_options","title":"Get the function options based on the selected function description — get_plot_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"get_plot_options(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_plot_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_plot_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"ls <- mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_plots() |>   (\\(.x){     .x[[1]]   })() |>   get_plot_options() #> Error in supported_plots(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily get variable icon based on data type or class — get_var_icon","title":"Easily get variable icon based on data type or class — get_var_icon","text":"Easily get variable icon based data type class","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily get variable icon based on data type or class — get_var_icon","text":"","code":"get_var_icon(data, class.type = c(\"class\", \"type\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily get variable icon based on data type or class — get_var_icon","text":"data variable data frame class.type \"type\" \"class\". Default \"class\"","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily get variable icon based on data type or class — get_var_icon","text":"svg icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily get variable icon based on data type or class — get_var_icon","text":"","code":"mtcars[1] |> get_var_icon(\"class\") #> $mpg #>  default_parsing(mtcars) |> get_var_icon() #> $mpg #>  #> $cyl #>  #> $disp #>  #> $hp #>  #> $drat #>  #> $wt #>  #> $qsec #>  #> $vs #>  #> $am #>  #> $gear #>  #> $carb #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function follows idea comment: https://stackoverflow.com/questions/38983179/-call--function--r-without-loading--package","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(x)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"x function function name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(\"stats::lm\") #> function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> } #> <bytecode: 0x5611878e96b8> #> <environment: namespace:stats>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting export objects — gg_theme_export","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"GGplot default theme plotting export objects","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"","code":"gg_theme_export()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting in Shiny — gg_theme_shiny","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"GGplot default theme plotting Shiny","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"","code":"gg_theme_shiny()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.html","id":null,"dir":"Reference","previous_headings":"","what":"Area proportional venn diagrams — ggeulerr","title":"Area proportional venn diagrams — ggeulerr","text":"slightly modified https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded functions uses eulerr::euler plot area proportional venn diagramms plots using ggplot2","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Area proportional venn diagrams — ggeulerr","text":"","code":"ggeulerr(combinations, show_quantities = TRUE, show_labels = TRUE, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Area proportional venn diagrams — ggeulerr","text":"combinations set relationships named numeric vector, matrix, data.frame(See eulerr::euler) show_quantities whether show number intersecting elements show_labels whether show set names ... arguments passed eulerr::euler","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":null,"dir":"Reference","previous_headings":"","what":"Matches pattern to vector based on match type — grepl_fix","title":"Matches pattern to vector based on match type — grepl_fix","text":"Matches pattern vector based match type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"grepl_fix(data, pattern, type = c(\"prefix\", \"infix\", \"suffix\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Matches pattern to vector based on match type — grepl_fix","text":"data vector pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\".","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Matches pattern to vector based on match type — grepl_fix","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"c(\"id\", \"age\", \"weight_0\", \"weight_1\") |> grepl_fix(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #> [1] FALSE FALSE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":null,"dir":"Reference","previous_headings":"","what":"Return if available — if_not_missing","title":"Return if available — if_not_missing","text":"Return available","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Return if available — if_not_missing","text":"","code":"if_not_missing(data, default = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Return if available — if_not_missing","text":"data vector default assigned value missings","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Return if available — if_not_missing","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Return if available — if_not_missing","text":"","code":"NULL |> if_not_missing(\"new\") #> [1] \"new\" c(2, \"a\", NA) |> if_not_missing() #> [1] \"2\" \"a\" \"See\" |> if_not_missing() #> [1] \"See\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to ease data file import — import-file-type","title":"Wrapper to ease data file import — import-file-type","text":"Wrapper ease data file import","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to ease data file import — import-file-type","text":"","code":"import_delim(file, skip, encoding, na.strings)  import_xls(file, sheet, skip, na.strings)  import_ods(file, sheet, skip, na.strings)  import_dta(file)  import_rds(file)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to ease data file import — import-file-type","text":"file path file skip number row skip encoding file encoding na.strings character(s) interpret missing values. sheet Excel files, sheet read","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to ease data file import — import-file-type","text":"data.frame data.frame data.frame data.frame data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file.html","id":null,"dir":"Reference","previous_headings":"","what":"Import data from a file — import-file","title":"Import data from a file — import-file","text":"Let user upload file import data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Import data from a file — import-file","text":"","code":"import_file_ui(   id,   title = \"\",   preview_data = TRUE,   file_extensions = c(\".csv\", \".txt\", \".xls\", \".xlsx\", \".rds\", \".fst\", \".sas7bdat\",     \".sav\"),   layout_params = c(\"dropdown\", \"inline\") )  import_file_server(   id,   btn_show_data = TRUE,   show_data_in = c(\"popup\", \"modal\"),   trigger_return = c(\"button\", \"change\"),   return_class = c(\"data.frame\", \"data.table\", \"tbl_df\", \"raw\"),   reset = reactive(NULL),   limit = 1e+05 )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Import data from a file — import-file","text":"preview_data Show preview data file input. file_extensions File extensions accepted shiny::fileInput(), can also MIME type. layout_params display import parameters : dropdown button inline file input.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Test app for the import_file module — import_file_demo_app","title":"Test app for the import_file module — import_file_demo_app","text":"Test app import_file module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"import_file_demo_app()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"if (FALSE) { # \\dontrun{ import_file_demo_app() } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.html","id":null,"dir":"Reference","previous_headings":"","what":"Import data from an Environment — import-globalenv","title":"Import data from an Environment — import-globalenv","text":"Let user select dataset environment package's environment. Modified datamods","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Import data from an Environment — import-globalenv","text":"","code":"import_globalenv_ui(   id,   globalenv = TRUE,   packages = datamods::get_data_packages(),   title = TRUE )  import_globalenv_server(   id,   btn_show_data = TRUE,   show_data_in = c(\"popup\", \"modal\"),   trigger_return = c(\"button\", \"change\"),   return_class = c(\"data.frame\", \"data.table\", \"tbl_df\", \"raw\"),   reset = reactive(NULL) )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Import data from an Environment — import-globalenv","text":"id Module's ID. globalenv Search data Global environment. packages Name packages search data. title Module's title, TRUE use default title, use NULL title shiny.tag custom one. btn_show_data Display button display data modal window import successful. show_data_in display data: \"popup\" \"modal\" window. trigger_return update selected data: \"button\" (user click button) \"change\" (time user select dataset list). return_class Class returned data: data.frame, data.table, tbl_df (tibble) raw. reset reactive function triggered resets data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":null,"dir":"Reference","previous_headings":"","what":"Split vector by an index and embed addition — index_embed","title":"Split vector by an index and embed addition — index_embed","text":"Split vector index embed addition","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split vector by an index and embed addition — index_embed","text":"","code":"index_embed(data, index, add = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split vector by an index and embed addition — index_embed","text":"data vector index split index add addition","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split vector by an index and embed addition — index_embed","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":null,"dir":"Reference","previous_headings":"","what":"Test class — is_any_class","title":"Test class — is_any_class","text":"Test class","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test class — is_any_class","text":"","code":"is_any_class(data, class.vec)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test class — is_any_class","text":"data data class.vec vector class names test","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test class — is_any_class","text":"factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test class — is_any_class","text":"","code":"if (FALSE) { # \\dontrun{ vapply(REDCapCAST::redcapcast_data, \\(.x){   is_any_class(.x, c(\"hms\", \"Date\", \"POSIXct\", \"POSIXt\")) }, logical(1)) } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"Checks elements vector equally spaced indication ID","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"is_consecutive(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"1:10 |> is_consecutive() #> [1] TRUE sample(1:100,40) |> is_consecutive() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":null,"dir":"Reference","previous_headings":"","what":"Test is date/datetime/time — is_datetime","title":"Test is date/datetime/time — is_datetime","text":"Test date/datetime/time","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test is date/datetime/time — is_datetime","text":"","code":"is_datetime(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test is date/datetime/time — is_datetime","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test is date/datetime/time — is_datetime","text":"factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test is date/datetime/time — is_datetime","text":"","code":"vapply(REDCapCAST::redcapcast_data, is_datetime, logical(1)) #>                    record_id            redcap_event_name  #>                        FALSE                        FALSE  #>     redcap_repeat_instrument       redcap_repeat_instance  #>                        FALSE                        FALSE  #>                          cpr                    inclusion  #>                        FALSE                         TRUE  #>               inclusion_time                          dob  #>                         TRUE                         TRUE  #>                          age                  age_integer  #>                        FALSE                        FALSE  #>                          sex                 cohabitation  #>                        FALSE                        FALSE  #>                 hypertension                     diabetes  #>                        FALSE                        FALSE  #>                       region baseline_data_start_complete  #>                        FALSE                        FALSE  #>                 mrs_assessed                     mrs_date  #>                        FALSE                         TRUE  #>                    mrs_score                 mrs_complete  #>                        FALSE                        FALSE  #>                      con_mrs                     con_calc  #>                        FALSE                        FALSE  #>           consensus_complete               event_datetime  #>                        FALSE                         TRUE  #>                    event_age                   event_type  #>                        FALSE                        FALSE  #>           new_event_complete  #>                        FALSE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if element is identical to the previous — is_identical_to_previous","title":"Test if element is identical to the previous — is_identical_to_previous","text":"Test element identical previous","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if element is identical to the previous — is_identical_to_previous","text":"","code":"is_identical_to_previous(data, no.name = TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if element is identical to the previous — is_identical_to_previous","text":"data data. vector, data.frame list .name logical remove names attribute testing","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if element is identical to the previous — is_identical_to_previous","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if element is identical to the previous — is_identical_to_previous","text":"","code":"c(1, 1, 2, 3, 3, 2, 4, 4) |> is_identical_to_previous() #> [1] FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE mtcars[c(1, 1, 2, 3, 3, 2, 4, 4)] |> is_identical_to_previous() #> [1] FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE list(1, 1, list(2), \"A\", \"a\", \"a\") |> is_identical_to_previous() #> [1] FALSE  TRUE FALSE FALSE FALSE  TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":null,"dir":"Reference","previous_headings":"","what":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"Determine variable data frame character contains recognized delimiters","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"","code":"is_splittable(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"data vector data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"","code":"any(apply(mtcars, 2, is_splittable)) #> [1] FALSE is_splittable(mtcars) #>   mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb  #> FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if url is valid format for REDCap API — is_valid_redcap_url","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"Test url valid format REDCap API","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"is_valid_redcap_url(url)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"url url","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"url <- c(   \"www.example.com\",   \"redcap.your.inst/api/\",   \"https://redcap.your.inst/api/\",   \"https://your.inst/redcap/api/\",   \"https://www.your.inst/redcap/api/\" ) is_valid_redcap_url(url) #> [1] FALSE FALSE  TRUE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate REDCap token — is_valid_token","title":"Validate REDCap token — is_valid_token","text":"Validate REDCap token","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate REDCap token — is_valid_token","text":"","code":"is_valid_token(token, pattern_env = NULL, nchar = 32)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate REDCap token — is_valid_token","text":"token token pattern_env pattern","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate REDCap token — is_valid_token","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validate REDCap token — is_valid_token","text":"","code":"token <- paste(sample(c(1:9, LETTERS[1:6]), 32, TRUE), collapse = \"\") is_valid_token(token) #> [1] TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily launch the FreesearchR app — launch_FreesearchR","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"data.frames global environment accessible app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"","code":"launch_FreesearchR(...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"... passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"","code":"if (FALSE) { # \\dontrun{ data(mtcars) launch_FreesearchR(launch.browser = TRUE) } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":null,"dir":"Reference","previous_headings":"","what":"Limit the allowed data set size by number of cells — limit_data_size","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"function may act guard hosted app large data sets addition file size limitations. function limit data set dropping rows.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"","code":"limit_data_size(data, limit = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"data data.frame limit cell number limit. Default NULL.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"","code":"prod(dim(mtcars)) #> [1] 352 limit_data_size(mtcars) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2 limit_data_size(mtcars,100) #>                    mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4         21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag     21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710        22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive    21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout 18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant           18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360        14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D         24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230          22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily round log scale limits for nice plots — limit_log","title":"Easily round log scale limits for nice plots — limit_log","text":"Easily round log scale limits nice plots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily round log scale limits for nice plots — limit_log","text":"","code":"limit_log(data, fun, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily round log scale limits for nice plots — limit_log","text":"data data fun rounding function (floor/ceiling) ... ignored","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily round log scale limits for nice plots — limit_log","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily round log scale limits for nice plots — limit_log","text":"","code":"limit_log(-.1, floor) #> [1] 0.7 limit_log(.1, ceiling) #> [1] 2 limit_log(-2.1, ceiling) #> [1] 0.008 limit_log(2.1, ceiling) #> [1] 200"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":null,"dir":"Reference","previous_headings":"","what":"Line breaking at given number of characters for nicely plotting labels — line_break","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"Line breaking given number characters nicely plotting labels","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"line_break(data, lineLength = 20, force = FALSE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"data string lineLength maximum line length fixed flag force split exactly value given lineLength. Default FALSE, splitting spaces.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"\"Lorem ipsum... you know the routine\" |> line_break() #> [1] \"Lorem ipsum... you\\nknow the routine\" paste(sample(letters[1:10], 100, TRUE), collapse = \"\") |> line_break(force = TRUE) #> [1] \"gccehdajdebjihfdbcgb\\ncigaffbaadgbabdedhfc\\neaifgdbjhieacaaggaja\\ndfeediafjfibbfjihdhe\\niebfajgfhcgbidc\\n\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":null,"dir":"Reference","previous_headings":"","what":"List dataset contained in a package — list_pkg_data","title":"List dataset contained in a package — list_pkg_data","text":"List dataset contained package","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List dataset contained in a package — list_pkg_data","text":"","code":"list_pkg_data(pkg)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List dataset contained in a package — list_pkg_data","text":"pkg Name package, must installed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List dataset contained in a package — list_pkg_data","text":"character vector NULL.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List dataset contained in a package — list_pkg_data","text":"","code":"list_pkg_data(\"ggplot2\") #>  [1] \"diamonds\"       \"economics\"      \"economics_long\" \"faithfuld\"      #>  [5] \"luv_colours\"    \"midwest\"        \"mpg\"            \"msleep\"         #>  [9] \"presidential\"   \"seals\"          \"txhousing\"      #> attr(,\"package\") #> [1] \"ggplot2\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":null,"dir":"Reference","previous_headings":"","what":"Create validation data.frame — make_validation","title":"Create validation data.frame — make_validation","text":"Create validation data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create validation data.frame — make_validation","text":"","code":"make_validation(ls, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create validation data.frame — make_validation","text":"ls validation list ... magic dots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create validation data.frame — make_validation","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create validation data.frame — make_validation","text":"","code":"i18n <- shiny.i18n::Translator$new(translation_csvs_path = here::here(\"inst/translations\")) #> Warning: You didn't specify config translation yaml file. Default settings are used. i18n$set_translation_language(\"en\") df_original <- mtcars df_original[1, 2:4] <- NA df_obs <- df_original |> dplyr::filter(carb == 4) df_vars <- df_original[1:7] val <- purrr::map2(   .x = validation_lib(),   .y = list(     list(x = df_original, y = df_obs),     list(x = df_original, y = df_vars),     list(x = df_original)   ),   make_validation ) #> Error in validation_lib(): could not find function \"validation_lib\" val |> make_validation_alerts() #> Error: object 'val' not found  val2 <- purrr::map2(   .x = validation_lib()[2],   .y = list(list(x = mtcars, y = mtcars[0])),   make_validation ) #> Error in validation_lib(): could not find function \"validation_lib\" val2 |> make_validation_alerts() #> Error: object 'val2' not found  val3 <- make_validation(   ls = validation_lib()[[2]],   list(x = mtcars, y = mtcars[0]) ) #> Error in validation_lib(): could not find function \"validation_lib\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.html","id":null,"dir":"Reference","previous_headings":"","what":"Create alert from validation data.frame — make_validation_alerts","title":"Create alert from validation data.frame — make_validation_alerts","text":"Create alert validation data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create alert from validation data.frame — make_validation_alerts","text":"","code":"make_validation_alerts(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create alert from validation data.frame — make_validation_alerts","text":"data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"MCAR validation based on a gtsummary table bady — mcar_validate","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"MCAR validation based gtsummary table bady","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"","code":"mcar_validate(data, outcome = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"data data outcome outcome variable","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":null,"dir":"Reference","previous_headings":"","what":"Merge list of expressions — merge_expression","title":"Merge list of expressions — merge_expression","text":"Merge list expressions","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge list of expressions — merge_expression","text":"","code":"merge_expression(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge list of expressions — merge_expression","text":"data list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge list of expressions — merge_expression","text":"expression","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge list of expressions — merge_expression","text":"","code":"list(   rlang::call2(.fn = \"select\", !!!list(c(\"cyl\", \"disp\")), .ns = \"dplyr\"),   rlang::call2(.fn = \"default_parsing\", .ns = \"FreesearchR\") ) |> merge_expression() #> dplyr::select(c(\"cyl\", \"disp\")) %>% FreesearchR::default_parsing()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"Wrapper pivot gtsummary table data long plotting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"","code":"merge_long(list, model.names)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list custom regression models list model.names names models include","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":null,"dir":"Reference","previous_headings":"","what":"Get missingsness fraction — missing_fraction","title":"Get missingsness fraction — missing_fraction","text":"Get missingsness fraction","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get missingsness fraction — missing_fraction","text":"","code":"missing_fraction(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get missingsness fraction — missing_fraction","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get missingsness fraction — missing_fraction","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get missingsness fraction — missing_fraction","text":"","code":"c(NA, 1:10, rep(NA, 3)) |> missing_fraction() #> [1] 0.2857143"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":null,"dir":"Reference","previous_headings":"","what":"Converting all variables to logicals by missing status — missings_logic_across","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"Converting variables logicals missing status","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"","code":"missings_logic_across(data, exclude = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"data data exclude character vector variable names excluded","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"data frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"","code":"mtcars |> missings_logic_across(\"cyl\") #> # A tibble: 32 × 11 #>    mpg     cyl disp  hp    drat  wt    qsec  vs    am    gear  carb  #>    <lgl> <dbl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> #>  1 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  2 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  3 FALSE     4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  4 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  5 FALSE     8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  6 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  7 FALSE     8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  8 FALSE     4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  9 FALSE     4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #> 10 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #> # ℹ 22 more rows ## gtsummary::trial |> ##   missings_logic_across() |> ##   gtsummary::tbl_summary()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate function of missingness in data — missings_validate","title":"Validate function of missingness in data — missings_validate","text":"Validate function missingness data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate function of missingness in data — missings_validate","text":"","code":"missings_validate(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate function of missingness in data — missings_validate","text":"data data set","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate function of missingness in data — missings_validate","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validate function of missingness in data — missings_validate","text":"","code":"df <- mtcars df[1, 2:4] <- NA missings_validate(df) #>   p_miss #> 1   0.85"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to modify quarto file to render specific formats — modify_qmd","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"Wrapper modify quarto file render specific formats","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"","code":"modify_qmd(file, format)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"file filename format desired output","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"none","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":null,"dir":"Reference","previous_headings":"","what":"Set values as names and names as values — names2val","title":"Set values as names and names as values — names2val","text":"Set values names names values","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Set values as names and names as values — names2val","text":"","code":"names2val(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Set values as names and names as values — names2val","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Set values as names and names as values — names2val","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Set values as names and names as values — names2val","text":"","code":"names2val(c(\"Cylinders\" = \"cyl\", \"Transmission\" = \"am\", \"Gears\" = \"gear\")) #>            cyl             am           gear  #>    \"Cylinders\" \"Transmission\"        \"Gears\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Observations filter test wrapper — obs_filter_validate","title":"Observations filter test wrapper — obs_filter_validate","text":"Observations filter test wrapper","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Observations filter test wrapper — obs_filter_validate","text":"","code":"obs_filter_validate(before, after)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Observations filter test wrapper — obs_filter_validate","text":"data data ","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Observations filter test wrapper — obs_filter_validate","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a data overview data.frame ready for sparklines — overview_vars","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"Create data overview data.frame ready sparklines","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"overview_vars(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"mtcars |> overview_vars() #> # A tibble: 11 × 7 #>    icon    class   name  n_missing p_complete n_unique vals         #>    <chr>   <chr>   <chr>     <dbl>      <dbl>    <int> <named list> #>  1 numeric numeric mpg           0          1       25 <dbl [32]>   #>  2 numeric numeric cyl           0          1        3 <dbl [32]>   #>  3 numeric numeric disp          0          1       27 <dbl [32]>   #>  4 numeric numeric hp            0          1       22 <dbl [32]>   #>  5 numeric numeric drat          0          1       22 <dbl [32]>   #>  6 numeric numeric wt            0          1       29 <dbl [32]>   #>  7 numeric numeric qsec          0          1       30 <dbl [32]>   #>  8 numeric numeric vs            0          1        2 <dbl [32]>   #>  9 numeric numeric am            0          1        2 <dbl [32]>   #> 10 numeric numeric gear          0          1        3 <dbl [32]>   #> 11 numeric numeric carb          0          1        6 <dbl [32]>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":null,"dir":"Reference","previous_headings":"","what":"Reduce character vector with the native pipe operator or character string — pipe_string","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"Reduce character vector native pipe operator character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"","code":"pipe_string(data, collapse = \"|>\\n\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"data list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"","code":"list(   \"mtcars\",   rlang::call2(.fn = \"select\", !!!list(c(\"cyl\", \"disp\")), .ns = \"dplyr\"),   rlang::call2(.fn = \"default_parsing\", .ns = \"FreesearchR\") ) |>   lapply(expression_string) |>   pipe_string() |>   expression_string(\"data<-\") #> [1] \"data<-mtcars|>\\ndplyr::select(c('cyl', 'disp'))|>\\nFreesearchR::default_parsing()\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":null,"dir":"Reference","previous_headings":"","what":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"Regression coef plot gtsummary. Slightly modified pass arguments","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"# S3 method for class 'tbl_regression' plot(   x,   plot_ref = TRUE,   remove_header_rows = TRUE,   remove_reference_rows = FALSE,   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"x (tbl_regression, tbl_uvregression) 'tbl_regression' 'tbl_uvregression' object plot_ref (scalar logical) plot reference values remove_header_rows (scalar logical) logical indicating whether remove header rows categorical variables. Default TRUE remove_reference_rows (scalar logical) logical indicating whether remove reference rows categorical variables. Default FALSE. ... arguments passed ggstats::ggcoef_plot(...)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"if (FALSE) { # \\dontrun{ mod <- lm(mpg ~ ., default_parsing(mtcars)) p <- mod |>   gtsummary::tbl_regression() |>   plot(colour = \"variable\") } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot euler diagrams — plot_euler","title":"Easily plot euler diagrams — plot_euler","text":"Easily plot euler diagrams","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot euler diagrams — plot_euler","text":"","code":"plot_euler(data, pri, sec, ter = NULL, seed = 2103)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily plot euler diagrams — plot_euler","text":"data data seed seed x name main variable y name secondary variables z grouping variable","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot euler diagrams — plot_euler","text":"patchwork object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot euler diagrams — plot_euler","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler(\"A\", c(\"B\", \"C\"), \"D\", seed = 4) #> Error in plot_euler(data.frame(A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),     B = sample(c(\"A\", \"C\"), 50, TRUE), C = sample(c(TRUE, FALSE,         FALSE, FALSE), 50, TRUE), D = sample(c(TRUE, FALSE, FALSE,         FALSE), 50, TRUE)), \"A\", c(\"B\", \"C\"), \"D\", seed = 4): object 'i18n' not found mtcars |> plot_euler(\"vs\", \"am\", seed = 1)  mtcars |> plot_euler(\"vs\", \"am\", \"cyl\", seed = 1) #> Error in plot_euler(mtcars, \"vs\", \"am\", \"cyl\", seed = 1): object 'i18n' not found stRoke::trial |>   dplyr::mutate(     mfi_cut = cut(mfi_6, c(0, 12, max(mfi_6, na.rm = TRUE))),     mdi_cut = cut(mdi_6, c(0, 20, max(mdi_6, na.rm = TRUE)))   ) |>   purrr::map2(     c(sapply(stRoke::trial, \\(.x)REDCapCAST::get_attr(.x, attr = \"label\")), \"Fatigue\", \"Depression\"),     \\(.x, .y){       REDCapCAST::set_attr(.x, .y, \"label\")     }   ) |>   dplyr::bind_cols() |>   plot_euler(\"mfi_cut\", \"mdi_cut\")  stRoke::trial |>   plot_euler(pri=\"male\", sec=c(\"hypertension\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot single euler diagrams — plot_euler_single","title":"Easily plot single euler diagrams — plot_euler_single","text":"Easily plot single euler diagrams","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"plot_euler_single(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot single euler diagrams — plot_euler_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler_single()  mtcars[c(\"vs\", \"am\")] |> plot_euler_single()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Beautiful sankey plot — plot_sankey_single","title":"Beautiful sankey plot — plot_sankey_single","text":"Beautiful sankey plot","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"plot_sankey_single(   data,   pri,   sec,   color.group = c(\"pri\", \"sec\"),   colors = NULL,   missing.level = \"Missing\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Beautiful sankey plot — plot_sankey_single","text":"color.group set group colour . \"x\" \"y\". colors optinally specify colors. Give NA color, color level primary group color level secondary group. ... passed sankey_ready()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Beautiful sankey plot — plot_sankey_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey_single(\"first\", \"last\")  ds |> plot_sankey_single(\"first\", \"last\", color.group = \"sec\")  data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   plot_sankey_single(\"first\", \"last\", color.group = \"pri\")  mtcars |>   default_parsing() |>   plot_sankey_single(\"cyl\", \"vs\", color.group = \"pri\")  stRoke::trial |>   default_parsing() |>   plot_sankey_single(\"diabetes\", \"hypertension\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes."},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_functions","title":"Get possible regression models — possible_functions","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_functions","text":"","code":"possible_functions(data, design = c(\"cross-sectional\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_functions","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_functions","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_functions","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\"  mtcars |>   default_parsing() |>   dplyr::select(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_plots","title":"Get possible regression models — possible_plots","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_plots","text":"","code":"possible_plots(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_plots","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_plots","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_plots","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_plots() #> Error in supported_plots(): object 'i18n' not found  mtcars |>   default_parsing() |>   dplyr::select(\"mpg\") |>   possible_plots() #> Error in supported_plots(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Flexible file import based on extension — read_input","title":"Flexible file import based on extension — read_input","text":"Flexible file import based extension","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(file, consider.na = c(\"NA\", \"\\\"\\\"\", \"\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Flexible file import based on extension — read_input","text":"file file name consider.na character vector strings consider NAs","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Flexible file import based on extension — read_input","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(\"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv\") #> Rows: 28 Columns: 8 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: \",\" #> dbl (8): id, ab, age, imm, vis, ver, att, del #>  #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 28 × 8 #>       id    ab   age   imm   vis   ver   att   del #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1     1     1    74    38    35    30    29    35 #>  2     1     2    69    36    36    21    27    37 #>  3     2     1    63    32    31    26    34    38 #>  4     2     2    64    37    34    26    36    46 #>  5     3     1    69    39    33    31    47    29 #>  6     3     2    70    40    36    31    46    25 #>  7     4     1    79    44    37    20    37    36 #>  8     4     2    81    35    36    31    37    40 #>  9     5     1    77    35    26    17    20    36 #> 10     5     2    80    29    34    18    23    36 #> # ℹ 18 more rows"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Shiny module to browser and export REDCap data — m_redcap_readUI","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"Shiny module browser export REDCap data Test app redcap_read_shiny_module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"m_redcap_readUI(id, title = TRUE, url = NULL)  m_redcap_readServer(id)  redcap_demo_app()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"id Namespace id include_title logical include title","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"shiny ui element shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"if (FALSE) { # \\dontrun{ redcap_demo_app() } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a regression model programatically — regression_model","title":"Create a regression model programatically — regression_model","text":"Output concatenated list model information model","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a regression model programatically — regression_model","text":"","code":"regression_model(   data,   outcome.str = NULL,   auto.mode = FALSE,   formula.str = NULL,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_uv(   data,   outcome.str,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )  regression_model_uv_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a regression model programatically — regression_model","text":"data data outcome.str name outcome variable auto.mode Make assumptions function dependent outcome data format. Overwrites arguments. formula.str custom formula glue string. Default NULL. args.list custom character string converted using argsstring2list() list arguments. Default NULL. fun name custom function. Default NULL. vars character vector variables include ... ignored fun.descr Description chosen function matching description \"supported_functions()\"","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a regression model programatically — regression_model","text":"object standard class fun object standard class fun list list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a regression model programatically — regression_model","text":"","code":"gtsummary::trial |>   regression_model(outcome.str = \"age\") #> Error in str2lang(x): <text>:2:0: unexpected end of input #> 1: age~ #>    ^ gtsummary::trial |>   regression_model(     outcome.str = \"age\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) #>  #> Call: #> (function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> })(formula = age ~ ., data = structure(list(trt = structure(c(1L,  #> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L,  #> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L,  #> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L,  #> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L,  #> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L,  #> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L,  #> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L,  #> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\", \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(0L,  #>     1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L,  #>     0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L,  #>     0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L,  #>     0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L,  #>     1L, 1L, 0L, 0L), label = \"Tumor Response\"), death = structure(c(0L,  #>     0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L,  #>     0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L,  #>     1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L,  #>     1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L,  #>     1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L,  #>     0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 1L, 0L), label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)    trtDrug B       marker      stageT2      stageT3      stageT4   #>     45.9247      -0.4052      -0.1435       2.0519       2.4437      -3.1573   #>     gradeII     gradeIII     response        death      ttdeath   #>      0.1750       1.6855       4.9885       3.0775      -0.1394   #>  gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     auto.mode = FALSE,     fun = \"stats::glm\",     args.list = list(family = binomial(link = \"logit\"))   ) #> Error in str2lang(x): <text>:2:0: unexpected end of input #> 1: trt~ #>    ^ m <- mtcars |>   default_parsing() |>   regression_model(     outcome.str = \"mpg\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~{paste(vars,collapse='+')}\",     args.list = NULL,     vars = c(\"mpg\", \"cyl\")   ) #> Warning: the response appeared on the right-hand side and was dropped #> Warning: problem with term 1 in model.matrix: no columns are assigned broom::tidy(m) #> # A tibble: 3 × 5 #>   term        estimate std.error statistic  p.value #>   <chr>          <dbl>     <dbl>     <dbl>    <dbl> #> 1 (Intercept)    26.7      0.972     27.4  2.69e-22 #> 2 cyl6           -6.92     1.56      -4.44 1.19e- 4 #> 3 cyl8          -11.6      1.30      -8.90 8.57e-10 if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model_uv(outcome.str = \"age\") gtsummary::trial |>   regression_model_uv(     outcome.str = \"age\",     fun = \"stats::lm\",     args.list = NULL   ) m <- gtsummary::trial |> regression_model_uv(   outcome.str = \"trt\",   fun = \"stats::glm\",   args.list = list(family = stats::binomial(link = \"logit\")) ) lapply(m, broom::tidy) |> dplyr::bind_rows() } # } if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model(     outcome.str = \"age\",     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) ls <- regression_model_list(data = default_parsing(mtcars), outcome.str = \"cyl\", fun.descr = \"Ordinal logistic regression model\") summary(ls$model) ls <- regression_model_list(data = default_parsing(mtcars), outcome.str = \"mpg\", fun.descr = \"Linear regression model\")  ls <- regression_model_list(data = default_parsing(gtsummary::trial), outcome.str = \"trt\", fun.descr = \"Logistic regression model\") tbl <- gtsummary::tbl_regression(ls$model, exponentiate = TRUE) m <- gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     fun = \"stats::glm\",     formula.str = \"{outcome.str}~.\",     args.list = list(family = \"binomial\")   ) tbl2 <- gtsummary::tbl_regression(m, exponentiate = TRUE) broom::tidy(ls$model) broom::tidy(m) } # } if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model_uv(     outcome.str = \"trt\",     fun = \"stats::glm\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) |>   lapply(broom::tidy) |>   dplyr::bind_rows() ms <- regression_model_uv_list(data = default_parsing(mtcars), outcome.str = \"mpg\", fun.descr = \"Linear regression model\") ms$code ls <- regression_model_uv_list(data = default_parsing(mtcars), outcome.str = \"am\", fun.descr = \"Logistic regression model\") ls$code lapply(ms$model, broom::tidy) |> dplyr::bind_rows() } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Create table of regression model — regression_table","title":"Create table of regression model — regression_table","text":"Create table regression model","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create table of regression model — regression_table","text":"","code":"regression_table(x, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create table of regression model — regression_table","text":"x regression model ... passed methods args.list list arguments passed 'fun'. fun function use table creation. Default \"gtsummary::tbl_regression\".","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create table of regression model — regression_table","text":"object standard class fun","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":null,"dir":"Reference","previous_headings":"","what":"Create regression summary table — regression_table_create","title":"Create regression summary table — regression_table_create","text":"Create regression summary table","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create regression summary table — regression_table_create","text":"","code":"regression_table_create(   x,   ...,   args.list = NULL,   fun = \"gtsummary::tbl_regression\",   theme = c(\"jama\", \"lancet\", \"nejm\", \"qjecon\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create regression summary table — regression_table_create","text":"x (list ) regression model ... ignored now args.list args.list summary function fun table summary function. Default \"gtsummary::tbl_regression\" theme summary table theme","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create regression summary table — regression_table_create","text":"gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Remove empty/NA attributes — remove_empty_attr","title":"Remove empty/NA attributes — remove_empty_attr","text":"Remove empty/NA attributes","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Remove empty/NA attributes — remove_empty_attr","text":"","code":"remove_empty_attr(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Remove empty/NA attributes — remove_empty_attr","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Remove empty/NA attributes — remove_empty_attr","text":"data class input","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Remove empty/NA attributes — remove_empty_attr","text":"","code":"ds <- mtcars |>   lapply(\\(.x) REDCapCAST::set_attr(.x, label = NA, attr = \"label\")) |>   dplyr::bind_cols() ds |>   remove_empty_attr() |>   str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : num [1:32] 0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num [1:32] 1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ... mtcars |>   lapply(\\(.x) REDCapCAST::set_attr(.x, label = NA, attr = \"label\")) |>   remove_empty_attr() |>   str() #> List of 11 #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : num [1:32] 0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num [1:32] 1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":null,"dir":"Reference","previous_headings":"","what":"Removes columns with completenes below cutoff — remove_empty_cols","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"Removes columns completenes cutoff","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"remove_empty_cols(data, cutoff = 0.7)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data data frame cutoff numeric","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"data.frame(a = 1:10, b = NA, c = c(2, NA)) |> remove_empty_cols(cutoff = .5) #>     a  c #> 1   1  2 #> 2   2 NA #> 3   3  2 #> 4   4 NA #> 5   5  2 #> 6   6 NA #> 7   7  2 #> 8   8 NA #> 9   9  2 #> 10 10 NA"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"simple function remove nested lists, like uploading .rds","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"","code":"remove_nested_list(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"","code":"dplyr::tibble(a = 1:10, b = rep(list(\"a\"), 10)) |> remove_nested_list() #> # A tibble: 10 × 1 #>        a #>    <int> #>  1     1 #>  2     2 #>  3     3 #>  4     4 #>  5     5 #>  6     6 #>  7     7 #>  8     8 #>  9     9 #> 10    10 dplyr::tibble(a = 1:10, b = rep(list(c(\"a\", \"b\")), 10)) |> as.data.frame() #>     a    b #> 1   1 a, b #> 2   2 a, b #> 3   3 a, b #> 4   4 a, b #> 5   5 a, b #> 6   6 a, b #> 7   7 a, b #> 8   8 a, b #> 9   9 a, b #> 10 10 a, b"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":null,"dir":"Reference","previous_headings":"","what":"Get names of repeated instruments — repeated_instruments","title":"Get names of repeated instruments — repeated_instruments","text":"Get names repeated instruments","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get names of repeated instruments — repeated_instruments","text":"","code":"repeated_instruments(uri, token)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get names of repeated instruments — repeated_instruments","text":"uri REDCap database uri token database token","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get names of repeated instruments — repeated_instruments","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a select input control with icon(s) — selectInputIcon","title":"Create a select input control with icon(s) — selectInputIcon","text":"Extend form controls adding text icons , , sides classic selectInput.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a select input control with icon(s) — selectInputIcon","text":"","code":"selectInputIcon(   inputId,   label,   choices,   selected = NULL,   multiple = FALSE,   selectize = TRUE,   size = NULL,   width = NULL,   icon = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a select input control with icon(s) — selectInputIcon","text":"inputId input slot used access value. label Display label control, NULL label. choices List values select . elements list named, name — rather value — displayed user. also possible group related inputs providing named list whose elements (either named unnamed) lists, vectors, factors. case, outermost names used group labels (leveraging <optgroup> HTML tag) elements respective sublist. See example section small demo feature. selected initially selected value (multiple values multiple = TRUE). specified defaults first value single-select lists values multiple select lists. multiple selection multiple items allowed? selectize Whether use selectize.js . size Number items show selection box; larger number result taller box. compatible selectize=TRUE. Normally, multiple=FALSE, select input drop-list, size set, box instead. width width input, e.g. '400px', '100%'; see validateCssUnit().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a select input control with icon(s) — selectInputIcon","text":"numeric input control can added UI definition.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":null,"dir":"Reference","previous_headings":"","what":"Separate string wide or long — separate_string","title":"Separate string wide or long — separate_string","text":"Separate string wide long","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Separate string wide or long — separate_string","text":"","code":"separate_string(data, col, delim, direction = c(\"wide\", \"long\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Separate string wide or long — separate_string","text":"data data col column delim delimiter direction target direction","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Separate string wide or long — separate_string","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":null,"dir":"Reference","previous_headings":"","what":"(Re)label columns in data.frame — set_column_label","title":"(Re)label columns in data.frame — set_column_label","text":"(Re)label columns data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"(Re)label columns in data.frame — set_column_label","text":"","code":"set_column_label(data, label, overwrite = TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"(Re)label columns in data.frame — set_column_label","text":"data data.frame labelled label named list vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"(Re)label columns in data.frame — set_column_label","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"(Re)label columns in data.frame — set_column_label","text":"","code":"ls <- list(\"mpg\" = \"\", \"cyl\" = \"Cylinders\", \"disp\" = \"\", \"hp\" = \"\", \"drat\" = \"\", \"wt\" = \"\", \"qsec\" = \"\", \"vs\" = \"\", \"am\" = \"\", \"gear\" = \"\", \"carb\" = \"\") ls2 <- c(\"mpg\" = \"\", \"cyl\" = \"Cylinders\", \"disp\" = \"\", \"hp\" = \"Horses\", \"drat\" = \"\", \"wt\" = \"\", \"qsec\" = \"\", \"vs\" = \"\", \"am\" = \"\", \"gear\" = \"\", \"carb\" = \"\") ls3 <- c(\"mpg\" = \"\", \"cyl\" = \"\", \"disp\" = \"\", \"hp\" = \"Horses\", \"drat\" = \"\", \"wt\" = \"\", \"qsec\" = \"\", \"vs\" = \"\", \"am\" = \"\", \"gear\" = \"\", \"carb\" = \"\") mtcars |>   set_column_label(ls) |>   set_column_label(ls2) |>   set_column_label(ls3) #> # A tibble: 32 × 11 #>      mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1  21       6  160    110  3.9   2.62  16.5     0     1     4     4 #>  2  21       6  160    110  3.9   2.88  17.0     0     1     4     4 #>  3  22.8     4  108     93  3.85  2.32  18.6     1     1     4     1 #>  4  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1 #>  5  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2 #>  6  18.1     6  225    105  2.76  3.46  20.2     1     0     3     1 #>  7  14.3     8  360    245  3.21  3.57  15.8     0     0     3     4 #>  8  24.4     4  147.    62  3.69  3.19  20       1     0     4     2 #>  9  22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2 #> 10  19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4 #> # ℹ 22 more rows rlang::expr(FreesearchR::set_column_label(label = !!ls3)) |> expression_string() #> [1] \"FreesearchR::set_column_label(label = c(mpg = '', cyl = '', disp = '', hp = 'Horses', drat = '', wt = '', qsec = '', vs = '', am = '', gear = '', carb = ''))\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Display a table in a window — show_data","title":"Display a table in a window — show_data","text":"Display table window","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Display a table in a window — show_data","text":"","code":"show_data(   data,   title = NULL,   options = NULL,   show_classes = TRUE,   type = c(\"popup\", \"modal\", \"winbox\"),   width = \"65%\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Display a table in a window — show_data","text":"data data object (either matrix data.frame). title Title displayed window. options Arguments passed toastui::datagrid(). show_classes Show variables classes variables names table header. type Display table pop-shinyWidgets::show_alert(), modal window shiny::showModal() WinBox window shinyWidgets::WinBox(). width Width window, used type = \"popup\" type = \"winbox\". ... Additional options, wbOptions = wbOptions() wbControls = wbControls().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Display a table in a window — show_data","text":"value.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Display a table in a window — show_data","text":"use type = \"winbox\", need use shinyWidgets::html_dependency_winbox() somewhere UI.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":null,"dir":"Reference","previous_headings":"","what":"Simplified version of the snakecase packages to_snake_case — simple_snake","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"Simplified version snakecase packages to_snake_case","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"","code":"simple_snake(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"data character string vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"","code":"c(\"foo bar\", \"fooBar21\", \"!!Foo'B'a-r\", \"foo_bar\", \"F  OO bar\") |> simple_snake() #> [1] \"foo_bar\"   \"foobar21\"  \"fooba-r\"   \"foo_bar\"   \"f__oo_bar\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"Drop-replacement base::sort_by option remove NAs","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"","code":"sort_by(x, y, na.rm = FALSE, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"x x y y na.rm remove NAs ... passed base_sort_by","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"","code":"sort_by(c(\"Multivariable\", \"Univariable\"), c(\"Univariable\", \"Minimal\", \"Multivariable\")) #> [1] \"Univariable\"   NA              \"Multivariable\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":null,"dir":"Reference","previous_headings":"","what":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"Specify format arguments include qmd header/frontmatter","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"","code":"specify_qmd_format(data, fileformat = c(\"docx\", \"odt\", \"pdf\", \"all\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"data vector fileformat format include","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":null,"dir":"Reference","previous_headings":"","what":"String split module based on tidyr::separate_ — split-string","title":"String split module based on tidyr::separate_ — split-string","text":"String split module based tidyr::separate_","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"String split module based on tidyr::separate_ — split-string","text":"","code":"string_split_ui(id)  string_split_server(id, data_r = reactive(NULL))  modal_string_split(   id,   title = i18n$t(\"Split character string\"),   easyClose = TRUE,   size = \"xl\",   footer = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"String split module based on tidyr::separate_ — split-string","text":"id id data_r reactive data title Modal title easyClose easyClose size size footer footer","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"String split module based on tidyr::separate_ — split-string","text":"shiny ui module shiny module server shiny modal","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily subset by data type function — subset_types","title":"Easily subset by data type function — subset_types","text":"Easily subset data type function","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily subset by data type function — subset_types","text":"","code":"subset_types(data, types, type.fun = data_type)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily subset by data type function — subset_types","text":"data data types desired types type.fun function get type. Default outcome_type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily subset by data type function — subset_types","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily subset by data type function — subset_types","text":"","code":"default_parsing(mtcars) |> subset_types(\"ordinal\") #> # A tibble: 32 × 0 default_parsing(mtcars) |> subset_types(c(\"dichotomous\", \"categorical\")) #> # A tibble: 32 × 5 #>    cyl   vs    am    gear  carb  #>    <fct> <lgl> <lgl> <fct> <fct> #>  1 6     FALSE TRUE  4     4     #>  2 6     FALSE TRUE  4     4     #>  3 4     TRUE  TRUE  4     1     #>  4 6     TRUE  FALSE 3     1     #>  5 8     FALSE FALSE 3     2     #>  6 6     TRUE  FALSE 3     1     #>  7 8     FALSE FALSE 3     4     #>  8 4     TRUE  FALSE 4     2     #>  9 4     TRUE  FALSE 4     2     #> 10 6     TRUE  FALSE 4     4     #> # ℹ 22 more rows #' default_parsing(mtcars) |> subset_types(\"factor\",class)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_functions","title":"Implemented functions — supported_functions","text":"Library supported functions. list name \"descr\" element unique element list.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_functions","text":"","code":"supported_functions()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_functions","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_functions","text":"","code":"supported_functions() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>  #> $glm #> $glm$descr #> [1] \"Logistic regression model\" #>  #> $glm$design #> [1] \"cross-sectional\" #>  #> $glm$out.type #> [1] \"dichotomous\" #>  #> $glm$fun #> [1] \"stats::glm\" #>  #> $glm$args.list #> $glm$args.list$family #> [1] \"binomial\" #>  #>  #> $glm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $glm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $glm$table.args.list #> list() #>  #>  #> $polr #> $polr$descr #> [1] \"Ordinal logistic regression model\" #>  #> $polr$design #> [1] \"cross-sectional\" #>  #> $polr$out.type #> [1] \"categorical\" #>  #> $polr$fun #> [1] \"MASS::polr\" #>  #> $polr$args.list #> $polr$args.list$Hess #> [1] TRUE #>  #> $polr$args.list$method #> [1] \"logistic\" #>  #>  #> $polr$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $polr$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $polr$table.args.list #> list() #>  #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_plots","title":"Implemented functions — supported_plots","text":"Library supported functions. list name \"descr\" element unique element list. descr: Plot description primary.type: Primary variable data type (continuous, dichotomous ordinal) secondary.type: Secondary variable data type (continuous, dichotomous ordinal) secondary.extra: \"none\" NULL option choose none. tertiary.type: Tertiary variable data type (continuous, dichotomous ordinal)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_plots","text":"","code":"supported_plots()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_plots","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_plots","text":"","code":"supported_plots() |> str() #> Error in supported_plots(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":null,"dir":"Reference","previous_headings":"","what":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"Ensure symmetrical plot around 1 logarithmic x scale ratio plots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"","code":"symmetrical_scale_x_log10(plot, breaks = c(1, 2, 3, 5, 10), ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"plot ggplot2 plot breaks breaks used mirrored ... ignored","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":null,"dir":"Reference","previous_headings":"","what":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"substitue gtsummary::tbl_merge, use list names tab spanner names.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"","code":"tbl_merge(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"data gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"gt summary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":null,"dir":"Reference","previous_headings":"","what":"Get data type icons — type_icons","title":"Get data type icons — type_icons","text":"Get data type icons","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get data type icons — type_icons","text":"","code":"type_icons(x)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get data type icons — type_icons","text":"x character vector data classes","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get data type icons — type_icons","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get data type icons — type_icons","text":"","code":"\"ordinal\" |> type_icons() default_parsing(mtcars) |> sapply(data_type) |> type_icons() #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> $mpg #>  #> $cyl #>  #> $disp #>  #> $hp #>  #> $drat #>  #> $wt #>  #> $qsec #>  #> $vs #>  #> $am #>  #> $gear #>  #> $carb #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":null,"dir":"Reference","previous_headings":"","what":"FreesearchR UI elements list — ui_elements","title":"FreesearchR UI elements list — ui_elements","text":"FreesearchR UI elements list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"FreesearchR UI elements list — ui_elements","text":"","code":"ui_elements(selection)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"FreesearchR UI elements list — ui_elements","text":"selection specify element output","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"FreesearchR UI elements list — ui_elements","text":"Shinu UI elements","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Make unique variable names — unique_names","title":"Make unique variable names — unique_names","text":"Helper function create new variable names unique given set existing names (data set, example). variable name already exists, number appended.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Make unique variable names — unique_names","text":"","code":"unique_names(new, existing = character())"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Make unique variable names — unique_names","text":"new vector proposed new variable names existing vector existing variable names","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Make unique variable names — unique_names","text":"vector unique new variable names","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Make unique variable names — unique_names","text":"","code":"unique_names(c(\"var_x\", \"var_y\", \"var_x\"), c(\"var_x\", \"var_z\")) #> [1] \"var_x_1\" \"var_y\"   \"var_x_2\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":null,"dir":"Reference","previous_headings":"","what":"Create unique short names of character vector items based on index — unique_short","title":"Create unique short names of character vector items based on index — unique_short","text":"function prefer original names, append index long strings.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create unique short names of character vector items based on index — unique_short","text":"","code":"unique_short(data, max = 15)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create unique short names of character vector items based on index — unique_short","text":"data character vector max maximum final name length","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create unique short names of character vector items based on index — unique_short","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create unique short names of character vector items based on index — unique_short","text":"","code":"c(\"kahdleidnsallskdj\", \"hej\") |> unique_short() #> [1] \"kahdleidnsall_1\" \"hej\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Reorder the Levels of a Factor Variable — update-factor","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"module contain interface reorder levels factor variable.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"","code":"update_factor_ui(id)  update_factor_server(id, data_r = reactive(NULL))  modal_update_factor(   id,   title = i18n$t(\"Update levels of a factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_update_factor(   id,   title = i18n$t(\"Update levels of a factor\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":null,"dir":"Reference","previous_headings":"","what":"Select, rename and convert variables — update-variables","title":"Select, rename and convert variables — update-variables","text":"Select, rename convert variables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Select, rename and convert variables — update-variables","text":"","code":"update_variables_ui(id, title = \"\")  update_variables_server(   id,   data,   height = NULL,   return_data_on_init = FALSE,   try_silent = FALSE )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Select, rename and convert variables — update-variables","text":"id Module's ID title Module's title, TRUE use default title, use NULL title shiny.tag custom one. data data.frame reactive function returning data.frame. height Height table. return_data_on_init Return initial data module called. try_silent logical: report error messages suppressed?","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Select, rename and convert variables — update-variables","text":"shiny::reactive() function returning updated data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":null,"dir":"Reference","previous_headings":"","what":"Modified from the datamods pacakge — update_variables_datagrid","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"Modified datamods pacakge","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"update_variables_datagrid(   data,   height = NULL,   selectionId = NULL,   buttonId = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"data data height height selectionId selectionId buttonId buttonId","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"mtcars |>   summary_vars() |>   update_variables_datagrid() #> Error in update_variables_datagrid(summary_vars(mtcars)): could not find function \"update_variables_datagrid\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":null,"dir":"Reference","previous_headings":"","what":"Validation module — validation_ui","title":"Validation module — validation_ui","text":"Check dataset respect validation expectations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validation module — validation_ui","text":"","code":"validation_ui(id, max_height = NULL, ...)  validation_server(id, data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validation module — validation_ui","text":"id Module's ID. max_height Maximum height validation results element, useful many rules. ... Arguments passed actionButton uiOutput depending display mode, use inputId/outputId, label icon (button ). data reactive function returning data.frame.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validation module — validation_ui","text":"UI: HTML tags can included shiny's UI Server: list two slots: status: reactive function returning best status available \"OK\", \"Failed\" \"Error\". details: reactive function returning list validation details.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validation module — validation_ui","text":"","code":"#' Data and analyses validation demo #' #' @returns #' @export #' #' @examples #' \\dontrun{ #' validation_demo_app() #' } validation_demo_app <- function() {   ui <- shiny::fluidPage(     shiny::tags$h2(\"Validation\"),     IDEAFilter::IDEAFilter_ui(\"data_filter\"),     shiny::br(),     DT::DTOutput(\"data_final\"),     shiny::br(),     validation_ui(\"validation_demo_2\")   )    server <- function(input, output, session) {     rv <- shiny::reactiveValues(       data_original = shiny::reactive(mtcars),       data_filtered = NULL     )      rv_validation <- shiny::reactiveValues(       obs_filter = NULL,       vars_filter = NULL     )      data_filter <- IDEAFilter::IDEAFilter(       id = \"data_filter\",       data = mtcars,       verbose = TRUE     )      shiny::observeEvent(       data_filter(),       {         rv$data_filtered <- data_filter()       }     )      output$data_final <- DT::renderDT(       data_filter()     )      shiny::observeEvent(       list(         data_filter()       ),       {         to_make_validation <- data_filter()         ## Validation         if (!is.null(to_make_validation)) {           validation <-             make_validation(               ls = validation_lib(\"obs_filter\"),               list(                 x = mtcars,                 y = to_make_validation               )             )          rv_validation$vars_filter <- validation          validation_server(id = \"validation_demo_2\", data = rv_validation$vars_filter)          }         }     )      # shiny::observeEvent(     #   list(     #     shiny::reactive(rv_validation$vars_filter)(),     #     data_filter()     #   ),     #   {     #     # browser()     #     # to_make_alert <- shiny::isolate(rv_validation$vars_filter)     #     to_make_alert <- shiny::reactive(rv_validation$vars_filter)()     #     if (!is.null(rv_validation$vars_filter)) {     #       validation_server(id = \"validation_demo_2\", data = to_make_alert)     #     }     #   }     # )   }   shiny::shinyApp(ui, server) }   #' Title #' #' @returns #' @export #' #' @examples #' validation_nr_demo_app() validation_nr_demo_app <- function() {   ui <- shiny::fluidPage(     shiny::tags$h2(\"Validation\"),     shiny::br(),     validation_ui(\"validation_demo_1\", max_height = \"30px\"),     shiny::br(),     validation_ui(\"validation_demo_2\")   )    server <- function(input, output, session) {     df_original <- mtcars      df_obs <- mtcars |> dplyr::filter(mpg > 20)      df_vars <- df_obs[1:6]      val1 <- purrr::map2(       .x = validation_lib()[1],       .y = list(list(x = df_original, y = df_obs)),       make_validation     )      val2 <- make_validation(       ls = validation_lib()[[2]],       list(x = df_original, y = df_vars)     )      validation_server(id = \"validation_demo_1\", data = val1)      validation_server(id = \"validation_demo_2\", data = val2)   }   shiny::shinyApp(ui, server) }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":null,"dir":"Reference","previous_headings":"","what":"Validation library — validation_lib","title":"Validation library — validation_lib","text":"Validation library","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validation library — validation_lib","text":"","code":"validation_lib(name = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validation library — validation_lib","text":"name Index name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validation library — validation_lib","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validation library — validation_lib","text":"","code":"validation_lib() #> Error in validation_lib(): could not find function \"validation_lib\" validation_lib(\"missings\") #> Error in validation_lib(\"missings\"): could not find function \"validation_lib\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Variable filter test wrapper — vars_filter_validate","title":"Variable filter test wrapper — vars_filter_validate","text":"Variable filter test wrapper","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Variable filter test wrapper — vars_filter_validate","text":"","code":"vars_filter_validate(before, after)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Variable filter test wrapper — vars_filter_validate","text":"data data ","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Variable filter test wrapper — vars_filter_validate","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Variable filter test wrapper — vars_filter_validate","text":"","code":"vars_filter_validate(mtcars, mtcars[1:6]) #> Error in vars_filter_validate(mtcars, mtcars[1:6]): could not find function \"vars_filter_validate\" vars_filter_validate(mtcars, mtcars[0]) #> Error in vars_filter_validate(mtcars, mtcars[0]): could not find function \"vars_filter_validate\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":null,"dir":"Reference","previous_headings":"","what":"A selectizeInput customized for named vectors — vectorSelectInput","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput customized named vectors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"vectorSelectInput(   inputId,   label,   choices,   selected = \"\",   ...,   placeholder = \"\",   onInitialize )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"inputId passed selectizeInput label passed selectizeInput choices named vector fields populated selected default selection ... passed selectizeInput placeholder passed selectizeInput options onInitialize passed selectizeInput options","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput dropdown element","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"if (shiny::interactive()) {   shinyApp(     ui = fluidPage(       shiny::uiOutput(\"select\"),       tableOutput(\"data\")     ),     server = function(input, output) {       output$select <- shiny::renderUI({         vectorSelectInput(           inputId = \"variable\", label = \"Variable:\",           data = c(             \"Cylinders\" = \"cyl\",             \"Transmission\" = \"am\",             \"Gears\" = \"gear\"           )         )       })        output$data <- renderTable(         {           mtcars[, c(\"mpg\", input$variable), drop = FALSE]         },         rownames = TRUE       )     }   ) } #> Error: 'interactive' is not an exported object from 'namespace:shiny'"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":null,"dir":"Reference","previous_headings":"","what":"Vertical stacked bar plot wrapper — vertical_stacked_bars","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"Vertical stacked bar plot wrapper","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"","code":"vertical_stacked_bars(   data,   score = \"full_score\",   group = \"pase_0_q\",   strata = NULL,   t.size = 10,   l.color = \"black\",   l.size = 0.5,   draw.lines = TRUE,   label.str = \"{n}\\n{round(100 * p,0)}%\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"data data.frame score outcome variable group grouping variable strata stratifying variable t.size text size","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — visual-summary","title":"Data correlations evaluation module — visual-summary","text":"Data correlations evaluation module Visual summary server Visual summary modal Plot missings class apexcharter. use FreesearchR. Ggplot2 data summary visualisation based visdat::vis_dat.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — visual-summary","text":"","code":"visual_summary_ui(id)  visual_summary_server(id, data_r = shiny::reactive(NULL), ...)  modal_visual_summary(   id,   title = \"Visual overview of data classes and missing observations\",   easyClose = TRUE,   size = \"xl\",   footer = NULL,   ... )  missings_apex_plot(data, animation = FALSE, ...)  visual_summary(data, legend.title = NULL, ylab = \"Observations\", ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — visual-summary","text":"id id data_r reactive data ... optional arguments passed data_summary_gather() title title easyClose easyClose size modal size footer modal footer data data legend.title Legend title ylab Y axis label","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — visual-summary","text":"Shiny ui module shiny server shiny modal apexcharter::apexchart() htmlwidget object. ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":null,"dir":"Reference","previous_headings":"","what":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"function requires assumes systematic naming variables. now supports one level pivoting. Adding levels require added \"ignore\" string pattern similarly. Example 2.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"wide2long(   data,   pattern,   type = c(\"prefix\", \"infix\", \"suffix\"),   id.col = 1,   instance.name = \"instance\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data data pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\". id.col ID column. fill ID . Column name numeric index. Default \"1\", first column. instance.name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_1\", \"height_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight height #> 1   1  77        0     84     NA #> 2   1  NA        1     85    170 #> 3   2  75        0     95     NA #> 4   2  NA        1     98    193 #> 5   3  74        0     87     NA #> 6   3  NA        1     92    196 #> 7   4  73        0     77     NA #> 8   4  NA        1     71    188 #> 9   5  74        0     70     NA #> 10  5  NA        1     73    186 #> 11  6  78        0     72     NA #> 12  6  NA        1     76    191 #> 13  7  77        0     89     NA #> 14  7  NA        1     87    179 #> 15  8  73        0     84     NA #> 16  8  NA        1     84    178 #> 17  9  78        0     73     NA #> 18  9  NA        1     89    172 #> 19 10  77        0     72     NA #> 20 10  NA        1     98    193 #> 21 11  77        0     81     NA #> 22 11  NA        1    100    198 #> 23 12  76        0     76     NA #> 24 12  NA        1     83    191 #> 25 13  80        0     74     NA #> 26 13  NA        1     81    181 #> 27 14  78        0     92     NA #> 28 14  NA        1     88    175 #> 29 15  79        0     87     NA #> 30 15  NA        1     70    182 #> 31 16  77        0     77     NA #> 32 16  NA        1     87    184 #> 33 17  73        0     90     NA #> 34 17  NA        1     85    170 #> 35 18  70        0     71     NA #> 36 18  NA        1     79    183 #> 37 19  75        0     91     NA #> 38 19  NA        1     87    177 #> 39 20  74        0     96     NA #> 40 20  NA        1     75    189 data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_a_1\", \"height_b_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight weight_a height_b #> 1   1  71        0     97       NA       NA #> 2   1  NA        1     NA       71      178 #> 3   2  72        0     96       NA       NA #> 4   2  NA        1     NA       73      181 #> 5   3  80        0     83       NA       NA #> 6   3  NA        1     NA       99      182 #> 7   4  75        0     81       NA       NA #> 8   4  NA        1     NA       85      193 #> 9   5  73        0     80       NA       NA #> 10  5  NA        1     NA       97      176 #> 11  6  71        0     91       NA       NA #> 12  6  NA        1     NA       83      181 #> 13  7  70        0     79       NA       NA #> 14  7  NA        1     NA       71      197 #> 15  8  71        0     98       NA       NA #> 16  8  NA        1     NA       83      197 #> 17  9  73        0     96       NA       NA #> 18  9  NA        1     NA       82      171 #> 19 10  70        0     89       NA       NA #> 20 10  NA        1     NA       75      194 #> 21 11  74        0     88       NA       NA #> 22 11  NA        1     NA       93      192 #> 23 12  73        0     87       NA       NA #> 24 12  NA        1     NA       84      194 #> 25 13  76        0     90       NA       NA #> 26 13  NA        1     NA       90      174 #> 27 14  73        0     77       NA       NA #> 28 14  NA        1     NA       74      198 #> 29 15  71        0     99       NA       NA #> 30 15  NA        1     NA       76      172 #> 31 16  73        0    100       NA       NA #> 32 16  NA        1     NA       86      179 #> 33 17  78        0     72       NA       NA #> 34 17  NA        1     NA       81      182 #> 35 18  71        0     90       NA       NA #> 36 18  NA        1     NA       86      179 #> 37 19  73        0     91       NA       NA #> 38 19  NA        1     NA       83      196 #> 39 20  73        0     71       NA       NA #> 40 20  NA        1     NA       80      172 # Optional filling of missing values by last observation carried forward # Needed for mmrm analyses long_missings |>   # Fills record ID assuming none are missing   tidyr::fill(record_id) |>   # Grouping by ID for the last step   dplyr::group_by(record_id) |>   # Filling missing data by ID   tidyr::fill(names(long_missings)[!names(long_missings) %in% new_names]) |>   # Remove grouping   dplyr::ungroup() #> Error: object 'long_missings' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapping — wrap_plot_list","title":"Wrapping — wrap_plot_list","text":"Wrapping","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapping — wrap_plot_list","text":"","code":"wrap_plot_list(   data,   tag_levels = NULL,   title = NULL,   axis.font.family = NULL,   guides = \"collect\",   axes = \"collect\",   axis_titles = \"collect\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapping — wrap_plot_list","text":"data list ggplot2 objects tag_levels passed patchwork::plot_annotation given. Default NULL title panel title guides passed patchwork::wrap_plots() axes passed patchwork::wrap_plots() axis_titles passed patchwork::wrap_plots() ... passed patchwork::wrap_plots()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapping — wrap_plot_list","text":"list ggplot2 objects","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"Wrapper save data RDS, load specified qmd render","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"","code":"write_quarto(data, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"data list pass qmd ... Passed quarto::quarto_render()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"output file name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25125","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.5","title":"FreesearchR 25.12.5","text":"NEW Added option add pairwise differences discriptive table.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25124","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.4","title":"FreesearchR 25.12.4","text":"Republish 25.12.3","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25123","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.3","title":"FreesearchR 25.12.3","text":"NEW Extended missingness evaluation include two different approaches. Docs catch video tutorials coming.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25122","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.2","title":"FreesearchR 25.12.2","text":"FIX Fixed hanging interface splitting strings. NEW New option shorten character variables first N words characters. Shortening characters useful working eg. ICD-10 diagnostic codes.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25121","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.1","title":"FreesearchR 25.12.1","text":"NEW Option edit factor label names “New factor” pop-. allows easier naming tables, also combine levels. new variable appended dataset label names changed. Code now also exported. FIX Fixes bug, white space code exported removed. Now little many spaces included. Fine tuning continues. NEW Easily copy code just clicking “copy” code blocks.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25112","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.11.2","title":"FreesearchR 25.11.2","text":"NEW Vignettes moved FreesearchR project knowledge base. mainly ease rendering allow quick easy updates well future translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25111","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.11.1","title":"FreesearchR 25.11.1","text":"NEW Added option select extensive baseline table selecting “Minimal” (current) “Extensive” adds mean/sd min/max well plots levels also dichotomous variables.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25105","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.5","title":"FreesearchR 25.10.5","text":"NEW New character/text split function available. selection delimiters recognised selectable. Function available splittable variables present. NEW Distribution plotting factors much improved including two new bar plot styles removing options better suited continuous data. last major functions implemented workshops Jitimai Zanzibar City, Zanzibar October 2025.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25104","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.4","title":"FreesearchR 25.10.4","text":"NEW Two new options create new simplified factors factors. “top” option keep top N levels, “bottom” option combine levels occurring set percentage. NEW “New factor” function received updates include detailed information methods creating new factors. LANGUAGE Updated Swahili strings. Danish strings translated. New languages track.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25103","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.3","title":"FreesearchR 25.10.3","text":"NEW Improvements translations strings translated. Nearing completion marking strings translation, means (almost) complete interface now translatable.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25102","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.2","title":"FreesearchR 25.10.2","text":"NEW Improvements translations strings translated. NEW detailed label stacked horizontal bar plot. NEW Better .rds import import first element data.frame list-type element supplied. NEW limit imported dataset size added ensure performance hosted version. data limited 100.000 cells dropping rows fit. vast majority users never experience capping, adds layer security stability hosting framework.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25101","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.1","title":"FreesearchR 25.10.1","text":"NEW Improvements translations strings translated. NEW Sample data filtered include select packages (NHANES stRoke). NEW Missings evaluations slightly tweaked include bold significant p-values easier overview.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2592","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.9.2","title":"FreesearchR 25.9.2","text":"NEW Improvements translations strings translated. Euler visualisation option limited plot dichotomous variables. also makes sense.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2591","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.9.1","title":"FreesearchR 25.9.1","text":"NEW Language revised make app accessible easier understand. NEW Foundations introducing internationalised UI introduced. Initial rudimentary translation Danish Swahili included. languages can added well. NEW Alerts guide select important steps aspects introduced. expected expand.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2582","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.8.2","title":"FreesearchR 25.8.2","text":"NEW Including NHANES dataset experimentation. BUG Improved JS correctly handle menu drop downs mobile devices DOCS Updated “Prepare > Overview” “Prepare > Overview filter” better reflect options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2581","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.8.1","title":"FreesearchR 25.8.1","text":"NEW improved use wrap_plot_list() pass additional arguments patchwork::wrap_plots() allowed specify axes align align_axes(). FIX fixed axis text printed Euler diagrams","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2572","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.7.2","title":"FreesearchR 25.7.2","text":"FIX refining hiding drop downs. JavaScript now separate file. Coded GAI help claude.ai. FIX refined iconography navigation FIX updated intro docs.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2571","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.7.1","title":"FreesearchR 25.7.1","text":"NEW UI overhaul navigation update. interface simplified clearly show relationship panels sub-items abandoning multiple levels panel instead show drop-menu. also results simplified sidebar menus room add controls future.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2564","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.4","title":"FreesearchR 25.6.4","text":"app now also published docker container. See README instructions. mainly use hosting app. Work ongoing publish true standalone app, preferably Windows MacOS. FIX improved plot labels.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2563","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.3","title":"FreesearchR 25.6.3","text":"NEW Introducing options evaluate missing observations. Inspired [visdat()] function {visdat} package, specialised function introduced easily visualise data classes missing observations data set. highly increases options visually get overview data assess pattern missing data. Also Evaluate, comparison module introduced compare distribution observations across variables depending missing vs non-missing specified variable. FIX REDCap import module updated visually PAI token now hidden password. module still used running locally accessing sensitive data. minor rewordings updated UI.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2562","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.2","title":"FreesearchR 25.6.2","text":"FIX Added warning using REDCap sensitive data running locally. applies data actually. Considering taking REDCap hosted version. Standalone app works. FIX Reworded completeness filter missingness, commonly used concept. FIX Improved layout around data filters improve usage. FIX Regression table report respects inclusion p-values .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2561","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.1","title":"FreesearchR 25.6.1","text":"FIX big allowing browse data FIX caught last bugs initiating creation new variables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2556","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.6","title":"FreesearchR 25.5.6","text":"FIX note max file size 5 mb FIX added banner dev version shinyapps.io FIX updated intro text","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2555","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.5","title":"FreesearchR 25.5.5","text":"FIX several minor bugs polish FIX include/exclude p-values regression table.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2554","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.4","title":"FreesearchR 25.5.4","text":"FIX correctly omit NAs data_type() call FIX omit NAs plotting Euler diagrams. FIX print correct labels horizontal stacked bars. FIX initial app load feel faster.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2553","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.3","title":"FreesearchR 25.5.3","text":"FIX little polish data import FIX polished REDCap import new code reference REDCapCAST::easy_redcap() function. FIX updated documentation reflect new private hosting Hetzner server Germany.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2552","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.2","title":"FreesearchR 25.5.2","text":"FIX: correct export plots. solution last version broke solved. NEW: added simple loading animation. privately hosted version now live app.freesearchr.org. now, hosted Hetzner Yunohost.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2551","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.1","title":"FreesearchR 25.5.1","text":"FIX: correct export single variable plot. NEW: Include app version report reference. NEW: Show progress connecting REDCap database. FIX: Data import code export.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2545","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.5","title":"FreesearchR 25.4.5","text":"BUG: Regression results code returned correctly IMPROVED: analyses results reset data change NEW: app usage tracking hosted app. README updated reflect.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2544","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.4","title":"FreesearchR 25.4.4","text":"Minor updates docs easier citation.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2543","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.3","title":"FreesearchR 25.4.3","text":"NEW: Added variables type filter easily exclude unwanted types. also includes data type rather data class summary table. evaluate. Types simpler, practical version R data class easy interpretation. NEW: logo ! emphasize underlying reliance R also inspire explore. IMPROVED: docs updated much comprehensive. continuously updated. Polishing moved hosted app new address fully reflect name change: https://agdamsbo.shinyapps.io/FreesearchR/","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2542","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.2","title":"FreesearchR 25.4.2","text":"Polished simplified data import module including much improved REDCap import module. CHANGE default_parsing() now ensure unique variable names. NEW Working code output major modules including import, modifications, filter, evaluation, plotting regression. nicely formatted! NEW basics “Getting started”-vignette done, can expanded later.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2541","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.1","title":"FreesearchR 25.4.1","text":"Focus polish improved ui/ux. Updating project name FreesearchR, renamed repository. Graphics coming. may introduce breaking chances others calling installing package. additional future changes planned. complete transition planned attending presenting poster European Stroke Organisation Conference 2025 May. Testing file upload conducted improved. Working improving code export. difficult get perfect. Initial focus extracting enough able learn . Regression calculations, plots, checks improved moved standalone module. Data overview/modifications simplified slightly.","code":""}]
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Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. 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Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. 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GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. License gives permission license work way, invalidate permission separately received . work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. Convey individual copies object code copy written offer provide Corresponding Source. alternative allowed occasionally noncommercially, received object code offer, accord subsection 6b. Convey object code offering access designated place (gratis charge), offer equivalent access Corresponding Source way place charge. need require recipients copy Corresponding Source along object code. place copy object code network server, Corresponding Source may different server (operated third party) supports equivalent copying facilities, provided maintain clear directions next object code saying find Corresponding Source. Regardless server hosts Corresponding Source, remain obligated ensure available long needed satisfy requirements. Convey object code using peer--peer transmission, provided inform peers object code Corresponding Source work offered general public charge subsection 6d. separable portion object code, whose source code excluded Corresponding Source System Library, need included conveying object code work. “User Product” either (1) “consumer product”, means tangible personal property normally used personal, family, household purposes, (2) anything designed sold incorporation dwelling. determining whether product consumer product, doubtful cases shall resolved favor coverage. particular product received particular user, “normally used” refers typical common use class product, regardless status particular user way particular user actually uses, expects expected use, product. product consumer product regardless whether product substantial commercial, industrial non-consumer uses, unless uses represent significant mode use product. “Installation Information” User Product means methods, procedures, authorization keys, information required install execute modified versions covered work User Product modified version Corresponding Source. information must suffice ensure continued functioning modified object code case prevented interfered solely modification made. convey object code work section , , specifically use , User Product, conveying occurs part transaction right possession use User Product transferred recipient perpetuity fixed term (regardless transaction characterized), Corresponding Source conveyed section must accompanied Installation Information. requirement apply neither third party retains ability install modified object code User Product (example, work installed ROM). requirement provide Installation Information include requirement continue provide support service, warranty, updates work modified installed recipient, User Product modified installed. Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms.","title":"GNU Affero General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. Notwithstanding provision License, material add covered work, may (authorized copyright holders material) supplement terms License terms: Disclaiming warranty limiting liability differently terms sections 15 16 License; Requiring preservation specified reasonable legal notices author attributions material Appropriate Legal Notices displayed works containing ; Prohibiting misrepresentation origin material, requiring modified versions material marked reasonable ways different original version; Limiting use publicity purposes names licensors authors material; Declining grant rights trademark law use trade names, trademarks, service marks; Requiring indemnification licensors authors material anyone conveys material (modified versions ) contractual assumptions liability recipient, liability contractual assumptions directly impose licensors authors. non-permissive additional terms considered “restrictions” within meaning section 10. Program received , part , contains notice stating governed License along term restriction, may remove term. license document contains restriction permits relicensing conveying License, may add covered work material governed terms license document, provided restriction survive relicensing conveying. add terms covered work accord section, must place, relevant source files, statement additional terms apply files, notice indicating find applicable terms. Additional terms, permissive non-permissive, may stated form separately written license, stated exceptions; requirements apply either way.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_8-termination","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"8. Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies.","title":"GNU Affero General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents.","title":"GNU Affero General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom.","title":"GNU Affero General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_13-remote-network-interaction-use-with-the-gnu-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":"<one line to give the program's name and a brief idea of what it does.>     Copyright (C) <year>  <name of author>      This program is free software: you can redistribute it and/or modify     it under the terms of the GNU Affero General Public License as     published by the Free Software Foundation, either version 3 of the     License, or (at your option) any later version.      This program is distributed in the hope that it will be useful,     but WITHOUT ANY WARRANTY; without even the implied warranty of     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the     GNU Affero General Public License for more details.      You should have received a copy of the GNU Affero General Public License     along with this program.  If not, see <https://www.gnu.org/licenses/>."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, however, version 25.4.2, FreesearchR app considered functional can used data evaluation analyses. (actual list quite long growing) planned new features improvements:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"implementation-in-real-world-clinical-studies-and-projects","dir":"","previous_headings":"","what":"Implementation in real world clinical studies and projects","title":"Project roadmap","text":"really main goal whole project.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"new-features","dir":"","previous_headings":"","what":"New features:","title":"Project roadmap","text":"Merge data multiple sources (can merge sheets workbook (xls ods), allow merging several files /REDcap data) Additional plot types (bar plots, others…) Missingness analysis panel","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"expanded-options-for-regression-models","dir":"","previous_headings":"","what":"Expanded options for regression models:","title":"Project roadmap","text":"Expansion regression analysis functionality put hold now focus basic use-cases): study designs Cross-sectional data analyses Longitudinal data analyses Survival analysis regression models Stratified analyses Mixed models repeated measures Cox regression analyses Data handling Transforming data (transpose pivoting)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"improved-documentation","dir":"","previous_headings":"","what":"Improved documentation:","title":"Project roadmap","text":"Video walk-central functions","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"platform-info","dir":"Articles","previous_headings":"","what":"Platform info","title":"Session info","text":"","code":"FreesearchR:::session_data$platform |> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"libraries","dir":"Articles","previous_headings":"","what":"Libraries","title":"Session info","text":"","code":"FreesearchR:::session_data$libs|> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Jutta Mari Adelin Jørgensen. Contributor. Anne Brink Behrndtz. Contributor.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). FreesearchR: Easy data analysis clinicians. R package version 25.12.3, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{,   title = {FreesearchR: Easy data analysis for clinicians},   author = {Andreas Gammelgaard Damsbo},   year = {2025},   note = {R package version 25.12.3},   url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr-","dir":"","previous_headings":"","what":"Easy data analysis for clinicians","title":"Easy data analysis for clinicians","text":"FreesearchR simple, clinical health data exploration analysis tool democratise clinical research assisting researcher easily evaluate analyse data export publication ready results. FreesearchR free open-source, accessible web browser link. app can also run locally, please see . feedback welcome can shared GitHub issue. suggestions collaboration much welcomed. Please reach !","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"motivation","dir":"","previous_headings":"","what":"Motivation","title":"Easy data analysis for clinicians","text":"app following simple goals: help health clinician getting overview data quality improvement projects clinical research help learners get good start analysing data coding R ease quick data overview basic visualisations clinical researcher","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-locally-on-your-own-machine","dir":"","previous_headings":"","what":"Run locally on your own machine","title":"Easy data analysis for clinicians","text":"FreesearchR app can also run machine data transmitted anywhere. Blow available options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-from-r-or-rstduio","dir":"","previous_headings":"Run locally on your own machine","what":"Run from R (or RStduio)","title":"Easy data analysis for clinicians","text":"Working data R, FreesearchR quick easy tool get overview perform first explorative analyses get going. data available R session available FreesearchR app. Just follow steps get going: Requirement: need R installed possibly editor like RStudio. open R console copy/paste following code, install devtools package FreesearchR R-package dependencies:","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"running-with-docker-compose","dir":"","previous_headings":"Run locally on your own machine","what":"Running with docker compose","title":"Easy data analysis for clinicians","text":"advanced users, wanting deploy FreesearchR app run anywhere, docker image available. minimal docker_compose.yml file:","code":"services:   freesearchr:     image: ghcr.io/agdamsbo/freesearchr:latest     ports:       - '3838:3838'     restart: on-failure"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Easy data analysis for clinicians","text":"Please note FreesearchR project published Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"translators","dir":"","previous_headings":"","what":"Translators","title":"Easy data analysis for clinicians","text":"Thank much translators helped translate validate translation drafts.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"acknowledgements","dir":"","previous_headings":"","what":"Acknowledgements","title":"Easy data analysis for clinicians","text":"Like project, project never possible without great work others. sources packages used: FreesearchR app built Shiny based R. gtsummary: superb flexible way create publication-ready analytical summary tables. dreamRs: maintainers broad selection great extensions tools Shiny. easystats: performance::check_model() function central sparking idea create data analysis tool. IDEAfilter: visually appealing data filter function based {shinyDataFilter}. project written human AI-based tools. online FreesearchR app contains tracking script, transmitting minimal data usage. uploaded data transmitted anywhere. look tracking data . tracking data sent running app locally (see ).","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":null,"dir":"Reference","previous_headings":"","what":"Use the FreesearchR colors — FreesearchR_palette","title":"Use the FreesearchR colors — FreesearchR_palette","text":"Use FreesearchR colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Use the FreesearchR colors — FreesearchR_palette","text":"n number colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Use the FreesearchR colors — FreesearchR_palette","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n=7) #> [1] \"#1E4A8F\" \"#FF6F61\" \"#00C896\" \"#FFB100\" \"#CC2E25\" \"#8A4FFF\" \"#11A0EC\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\", fun = class_icons)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |>   overview_vars() |>   toastui::datagrid() |>   add_class_icon()      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May \"left\", \"right\" numeric index.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_column.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Append a column to a data.frame — append_column","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_column.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Append a column to a data.frame — append_column","text":"","code":"mtcars |>   dplyr::mutate(mpg_cut = mpg) |>   append_column(mtcars$mpg, \"mpg_cutter\") #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb mpg_cut #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4    21.0 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4    21.0 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1    22.8 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1    21.4 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2    18.7 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1    18.1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4    14.3 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2    24.4 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2    22.8 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4    19.2 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4    17.8 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3    16.4 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3    17.3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3    15.2 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4    10.4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4    10.4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4    14.7 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1    32.4 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2    30.4 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1    33.9 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1    21.5 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2    15.5 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2    15.2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4    13.3 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2    19.2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1    27.3 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2    26.0 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2    30.4 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4    15.8 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6    19.7 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8    15.0 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2    21.4 #>                     mpg_cutter #> Mazda RX4                 21.0 #> Mazda RX4 Wag             21.0 #> Datsun 710                22.8 #> Hornet 4 Drive            21.4 #> Hornet Sportabout         18.7 #> Valiant                   18.1 #> Duster 360                14.3 #> Merc 240D                 24.4 #> Merc 230                  22.8 #> Merc 280                  19.2 #> Merc 280C                 17.8 #> Merc 450SE                16.4 #> Merc 450SL                17.3 #> Merc 450SLC               15.2 #> Cadillac Fleetwood        10.4 #> Lincoln Continental       10.4 #> Chrysler Imperial         14.7 #> Fiat 128                  32.4 #> Honda Civic               30.4 #> Toyota Corolla            33.9 #> Toyota Corona             21.5 #> Dodge Challenger          15.5 #> AMC Javelin               15.2 #> Camaro Z28                13.3 #> Pontiac Firebird          19.2 #> Fiat X1-9                 27.3 #> Porsche 914-2             26.0 #> Lotus Europa              30.4 #> Ford Pantera L            15.8 #> Ferrari Dino              19.7 #> Maserati Bora             15.0 #> Volvo 142E                21.4"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Append list with named index — append_list","title":"Append list with named index — append_list","text":"Append list named index","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Append list with named index — append_list","text":"","code":"append_list(data, list, index)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Append list with named index — append_list","text":"data data add list list list index index name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Append list with named index — append_list","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/append_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Append list with named index — append_list","text":"","code":"ls_d <- list(test = c(1:20)) ls_d <- list() data.frame(letters[1:20], 1:20) |> append_list(ls_d, \"letters\") #> $letters #>    letters.1.20. X1.20 #> 1              a     1 #> 2              b     2 #> 3              c     3 #> 4              d     4 #> 5              e     5 #> 6              f     6 #> 7              g     7 #> 8              h     8 #> 9              i     9 #> 10             j    10 #> 11             k    11 #> 12             l    12 #> 13             m    13 #> 14             n    14 #> 15             o    15 #> 16             p    16 #> 17             q    17 #> 18             r    18 #> 19             s    19 #> 20             t    20 #>  letters[1:20] |> append_list(ls_d, \"letters\") #> $letters #>  [1] \"a\" \"b\" \"c\" \"d\" \"e\" \"f\" \"g\" \"h\" \"i\" \"j\" \"k\" \"l\" \"m\" \"n\" \"o\" \"p\" \"q\" \"r\" \"s\" #> [20] \"t\" #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert string of arguments to list of arguments — argsstring2list","title":"Convert string of arguments to list of arguments — argsstring2list","text":"Idea answer: https://stackoverflow.com//62979238","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert string of arguments to list of arguments — argsstring2list","text":"","code":"argsstring2list(string)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert string of arguments to list of arguments — argsstring2list","text":"string string convert list use .call","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert string of arguments to list of arguments — argsstring2list","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert string of arguments to list of arguments — argsstring2list","text":"","code":"argsstring2list(\"A=1:5,b=2:4\") #> $A #> [1] 1 2 3 4 5 #>  #> $b #> [1] 2 3 4 #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Print a flexible baseline characteristics table — baseline_table","title":"Print a flexible baseline characteristics table — baseline_table","text":"Print flexible baseline characteristics table","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Print a flexible baseline characteristics table — baseline_table","text":"","code":"baseline_table(   data,   fun.args = NULL,   fun = gtsummary::tbl_summary,   vars = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Print a flexible baseline characteristics table — baseline_table","text":"data data set fun.args list arguments passed fun function vars character vector variables include","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Print a flexible baseline characteristics table — baseline_table","text":"object standard class fun","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/baseline_table.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Print a flexible baseline characteristics table — baseline_table","text":"","code":"mtcars |> baseline_table()     Characteristic       N = 321     mpg 19.2 (15.4, 22.8)cyl     4 11 (34%)    6 7 (22%)    8 14 (44%)disp 196 (121, 334)hp 123 (96, 180)drat 3.70 (3.08, 3.92)wt 3.33 (2.54, 3.65)qsec 17.71 (16.89, 18.90)vs 14 (44%)am 13 (41%)gear     3 15 (47%)    4 12 (38%)    5 5 (16%)carb     1 7 (22%)    2 10 (31%)    3 3 (9.4%)    4 10 (31%)    6 1 (3.1%)    8 1 (3.1%)1 Median (Q1, Q3); n (%)     mtcars |> baseline_table(fun.args = list(by = \"gear\"))     Characteristic       3 N = 151       4 N = 121       5 N = 51     mpg 15.5 (14.3, 18.7) 22.8 (21.0, 28.9) 19.7 (15.8, 26.0)cyl       4 1 (6.7%) 8 (67%) 2 (40%)    6 2 (13%) 4 (33%) 1 (20%)    8 12 (80%) 0 (0%) 2 (40%)disp 318 (276, 400) 131 (79, 160) 145 (120, 301)hp 180 (150, 215) 94 (66, 110) 175 (113, 264)drat 3.08 (3.00, 3.21) 3.92 (3.90, 4.10) 3.77 (3.62, 4.22)wt 3.73 (3.44, 4.07) 2.70 (2.07, 3.17) 2.77 (2.14, 3.17)qsec 17.42 (17.02, 18.00) 18.76 (18.41, 19.69) 15.50 (14.60, 16.70)vs 3 (20%) 10 (83%) 1 (20%)am 0 (0%) 8 (67%) 5 (100%)carb       1 3 (20%) 4 (33%) 0 (0%)    2 4 (27%) 4 (33%) 2 (40%)    3 3 (20%) 0 (0%) 0 (0%)    4 5 (33%) 4 (33%) 1 (20%)    6 0 (0%) 0 (0%) 1 (20%)    8 0 (0%) 0 (0%) 1 (20%)1 Median (Q1, Q3); n (%)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":null,"dir":"Reference","previous_headings":"","what":"Get data class icons — class_icons","title":"Get data class icons — class_icons","text":"Get data class icons","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get data class icons — class_icons","text":"","code":"class_icons(x)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get data class icons — class_icons","text":"x character vector data classes","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get data class icons — class_icons","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/class_icons.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get data class icons — class_icons","text":"","code":"\"numeric\" |> class_icons()|> str() #> List of 3 #>  $ name    : chr \"i\" #>  $ attribs :List of 3 #>   ..$ class     : chr \"fas fa-calculator\" #>   ..$ role      : chr \"presentation\" #>   ..$ aria-label: chr \"calculator icon\" #>  $ children: list() #>  - attr(*, \"class\")= chr \"shiny.tag\" #>  - attr(*, \"browsable_html\")= logi TRUE #>  - attr(*, \"html_dependencies\")=List of 1 #>   ..$ :List of 10 #>   .. ..$ name      : chr \"font-awesome\" #>   .. ..$ version   : chr \"6.5.2\" #>   .. ..$ src       :List of 1 #>   .. .. ..$ file: chr \"fontawesome\" #>   .. ..$ meta      : NULL #>   .. ..$ script    : NULL #>   .. ..$ stylesheet: chr [1:2] \"css/all.min.css\" \"css/v4-shims.min.css\" #>   .. ..$ head      : NULL #>   .. ..$ attachment: NULL #>   .. ..$ package   : chr \"fontawesome\" #>   .. ..$ all_files : logi TRUE #>   .. ..- attr(*, \"class\")= chr \"html_dependency\" mtcars |> sapply(class) |> class_icons() |> str() #> List of 11 #>  $ mpg :List of 3 #>   ..$ name    : chr \"i\" #>   ..$ attribs :List of 3 #>   .. ..$ class     : chr \"fas fa-calculator\" #>   .. ..$ role      : chr \"presentation\" #>   .. ..$ aria-label: chr \"calculator icon\" #>   ..$ children: list() #>   ..- attr(*, \"class\")= chr \"shiny.tag\" #>   ..- attr(*, \"browsable_html\")= logi TRUE #>   ..- attr(*, \"html_dependencies\")=List of 1 #>   .. ..$ :List of 10 #>   .. .. ..$ name      : chr \"font-awesome\" #>   .. .. ..$ version   : chr \"6.5.2\" #>   .. .. ..$ src       :List of 1 #>   .. .. .. ..$ file: chr 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script    : NULL #>   .. .. ..$ stylesheet: chr [1:2] \"css/all.min.css\" \"css/v4-shims.min.css\" #>   .. .. ..$ head      : NULL #>   .. .. ..$ attachment: NULL #>   .. .. ..$ package   : chr \"fontawesome\" #>   .. .. ..$ all_files : logi TRUE #>   .. .. ..- attr(*, \"class\")= chr \"html_dependency\" #>  $ disp:List of 3 #>   ..$ name    : chr \"i\" #>   ..$ attribs :List of 3 #>   .. ..$ class     : chr \"fas fa-calculator\" #>   .. ..$ role      : chr \"presentation\" #>   .. ..$ aria-label: chr \"calculator icon\" #>   ..$ children: list() #>   ..- attr(*, \"class\")= chr \"shiny.tag\" #>   ..- attr(*, \"browsable_html\")= logi TRUE #>   ..- attr(*, \"html_dependencies\")=List of 1 #>   .. ..$ :List of 10 #>   .. .. ..$ name      : chr \"font-awesome\" #>   .. .. ..$ version   : chr \"6.5.2\" #>   .. .. ..$ src       :List of 1 #>   .. .. .. ..$ file: chr \"fontawesome\" #>   .. .. ..$ meta      : NULL #>   .. .. ..$ script    : NULL #>   .. .. ..$ stylesheet: chr [1:2] 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chr \"i\" #>   ..$ attribs :List of 3 #>   .. ..$ class     : chr \"fas fa-calculator\" #>   .. ..$ role      : chr \"presentation\" #>   .. ..$ aria-label: chr \"calculator icon\" #>   ..$ children: list() #>   ..- attr(*, \"class\")= chr \"shiny.tag\" #>   ..- attr(*, \"browsable_html\")= logi TRUE #>   ..- attr(*, \"html_dependencies\")=List of 1 #>   .. ..$ :List of 10 #>   .. .. ..$ name      : chr \"font-awesome\" #>   .. .. ..$ version   : chr \"6.5.2\" #>   .. .. ..$ src       :List of 1 #>   .. .. .. ..$ file: chr \"fontawesome\" #>   .. .. ..$ meta      : NULL #>   .. .. ..$ script    : NULL #>   .. .. ..$ stylesheet: chr [1:2] \"css/all.min.css\" \"css/v4-shims.min.css\" #>   .. .. ..$ head      : NULL #>   .. .. ..$ attachment: NULL #>   .. .. ..$ package   : chr \"fontawesome\" #>   .. .. ..$ all_files : logi TRUE #>   .. .. ..- attr(*, \"class\")= chr \"html_dependency\" #>  $ gear:List of 3 #>   ..$ name    : chr \"i\" #>   ..$ attribs :List of 3 #>   .. ..$ class     : chr \"fas fa-calculator\" #>   .. ..$ role      : chr \"presentation\" #>   .. ..$ aria-label: chr \"calculator icon\" #>   ..$ children: list() #>   ..- attr(*, \"class\")= chr \"shiny.tag\" #>   ..- attr(*, \"browsable_html\")= logi TRUE #>   ..- attr(*, \"html_dependencies\")=List of 1 #>   .. ..$ :List of 10 #>   .. .. ..$ name      : chr \"font-awesome\" #>   .. .. ..$ version   : chr \"6.5.2\" #>   .. .. ..$ src       :List of 1 #>   .. .. .. ..$ file: chr \"fontawesome\" #>   .. .. ..$ meta      : NULL #>   .. .. ..$ script    : NULL #>   .. .. ..$ stylesheet: chr [1:2] \"css/all.min.css\" \"css/v4-shims.min.css\" #>   .. .. ..$ head      : NULL #>   .. .. ..$ attachment: NULL #>   .. .. ..$ package   : chr \"fontawesome\" #>   .. .. ..$ all_files : logi TRUE #>   .. .. ..- attr(*, \"class\")= chr \"html_dependency\" #>  $ carb:List of 3 #>   ..$ name    : chr \"i\" #>   ..$ attribs :List of 3 #>   .. ..$ class     : chr \"fas fa-calculator\" #>   .. ..$ role      : chr \"presentation\" #>   .. ..$ aria-label: chr \"calculator icon\" #>   ..$ children: list() #>   ..- attr(*, \"class\")= chr \"shiny.tag\" #>   ..- attr(*, \"browsable_html\")= logi TRUE #>   ..- attr(*, \"html_dependencies\")=List of 1 #>   .. ..$ :List of 10 #>   .. .. ..$ name      : chr \"font-awesome\" #>   .. .. ..$ version   : chr \"6.5.2\" #>   .. .. ..$ src       :List of 1 #>   .. .. .. ..$ file: chr \"fontawesome\" #>   .. .. ..$ meta      : NULL #>   .. .. ..$ script    : NULL #>   .. .. ..$ stylesheet: chr [1:2] \"css/all.min.css\" \"css/v4-shims.min.css\" #>   .. .. ..$ head      : NULL #>   .. .. ..$ attachment: NULL #>   .. .. ..$ package   : chr \"fontawesome\" #>   .. .. ..$ all_files : logi TRUE #>   .. .. ..- attr(*, \"class\")= chr \"html_dependency\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_common_axis.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract and clean axis ranges — clean_common_axis","title":"Extract and clean axis ranges — clean_common_axis","text":"Extract clean axis ranges","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_common_axis.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract and clean axis ranges — clean_common_axis","text":"","code":"clean_common_axis(p, axis)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_common_axis.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract and clean axis ranges — clean_common_axis","text":"p plot axis axis. x y.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_common_axis.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract and clean axis ranges — clean_common_axis","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_date.html","id":null,"dir":"Reference","previous_headings":"","what":"Attempts at applying uniform date format — clean_date","title":"Attempts at applying uniform date format — clean_date","text":"Attempts applying uniform date format","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_date.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Attempts at applying uniform date format — clean_date","text":"","code":"clean_date(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_date.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Attempts at applying uniform date format — clean_date","text":"data character string vector possible dates","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_date.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Attempts at applying uniform date format — clean_date","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":null,"dir":"Reference","previous_headings":"","what":"gsub wrapper for piping with default values for separator substituting — clean_sep","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"gsub wrapper piping default values separator substituting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"","code":"clean_sep(data, old.sep = \"[-.,/]\", new.sep = \"-\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"data character vector old.sep old separator new.sep new separator","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/clean_sep.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"gsub wrapper for piping with default values for separator substituting — clean_sep","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":null,"dir":"Reference","previous_headings":"","what":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"Written assisted Claude.ai. long possibly complicated, works","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"","code":"collapse_spaces(x, preserve_newlines = TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"x character string preserve_newlines flag preserve new lines","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Substitue spaces/tabs with single space excluding text within quotes — collapse_spaces","text":"","code":"collapse_spaces(c(\"cyl\", \"di sp\",\"s e   d\",\"d  e'dl  e'\")) #> Error in collapse_spaces(c(\"cyl\", \"di sp\", \"s e   d\", \"d  e'dl  e'\")): could not find function \"collapse_spaces\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":null,"dir":"Reference","previous_headings":"","what":"A selectizeInput customized for data frames with column labels — columnSelectInput","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"Copied modified IDEAFilter package Adds option select \"none\" handled later","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"","code":"columnSelectInput(   inputId,   label,   data,   selected = \"\",   ...,   col_subset = NULL,   placeholder = \"\",   onInitialize,   none_label = \"No variable selected\",   maxItems = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"inputId passed selectizeInput label passed selectizeInput data data.frame object fields populated selected default selection ... passed selectizeInput col_subset vector containing list allowable columns select placeholder passed selectizeInput options onInitialize passed selectizeInput options none_label label \"none\" item maxItems max number items","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A selectizeInput customized for data frames with column labels — columnSelectInput","text":"selectizeInput dropdown element","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":null,"dir":"Reference","previous_headings":"","what":"Pairwise comparison of missings across covariables — compare_missings","title":"Pairwise comparison of missings across covariables — compare_missings","text":"Pairwise comparison missings across covariables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Pairwise comparison of missings across covariables — compare_missings","text":"","code":"compare_missings(   data,   by_var,   max_level = 20,   type = c(\"predictors\", \"outcome\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Pairwise comparison of missings across covariables — compare_missings","text":"data data frame by_var variable stratify missingness","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/compare_missings.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Pairwise comparison of missings across covariables — compare_missings","text":"gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":null,"dir":"Reference","previous_headings":"","what":"Contrast Text Color — contrast_text","title":"Contrast Text Color — contrast_text","text":"Calculates best contrast text color given background color.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(   background,   light_text = \"white\",   dark_text = \"black\",   threshold = 0.5,   method = \"perceived_2\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Contrast Text Color — contrast_text","text":"background hex/named color value represents background. light_text hex/named color value represents light text color. dark_text hex/named color value represents dark text color. threshold numeric value 0 1 used determine luminance threshold background color text color. method character string specifies method calculating luminance. Three different methods available: c(\"relative\",\"perceived\",\"perceived_2\") ... parameter overflow. Ignored.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Contrast Text Color — contrast_text","text":"character string contains best contrast text color.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Contrast Text Color — contrast_text","text":"function aids deciding font color print given background. function based example provided teppo: https://stackoverflow.com//66669838/21019325. different methods provided based methods outlined StackOverflow thread: https://stackoverflow.com/questions/596216/formula--determine-perceived-brightness--rgb-color","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/contrast_text.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(c(\"#F2F2F2\", \"blue\")) #> [1] \"black\" \"white\"  contrast_text(c(\"#F2F2F2\", \"blue\"), method=\"relative\") #> [1] \"black\" \"white\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Correlation pairs validation — corr_pairs_validate","title":"Correlation pairs validation — corr_pairs_validate","text":"Correlation pairs validation","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Correlation pairs validation — corr_pairs_validate","text":"","code":"corr_pairs_validate(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Correlation pairs validation — corr_pairs_validate","text":"data data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Correlation pairs validation — corr_pairs_validate","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Correlation pairs validation — corr_pairs_validate","text":"","code":"# correlation_pairs(mtcars) |> corr_pairs_validate()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":null,"dir":"Reference","previous_headings":"","what":"Determine significant correlations in the data set — correlation_pairs","title":"Determine significant correlations in the data set — correlation_pairs","text":"Determine significant correlations data set","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Determine significant correlations in the data set — correlation_pairs","text":"","code":"correlation_pairs(data, threshold = 0.8)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Determine significant correlations in the data set — correlation_pairs","text":"data data.frame threshold correlation threshold","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Determine significant correlations in the data set — correlation_pairs","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Determine significant correlations in the data set — correlation_pairs","text":"","code":"correlation_pairs(mtcars) #> Error in cor$r %>% as.table(): could not find function \"%>%\" correlation_pairs(mtcars,.9) #> Error in cor$r %>% as.table(): could not find function \"%>%\" correlation_pairs(mtcars[c(1:4),]) #> [1] var1 var2 cor  #> <0 rows> (or 0-length row.names)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":null,"dir":"Reference","previous_headings":"","what":"Create new column — create-column","title":"Create new column — create-column","text":"module allow enter expression create new column data.frame.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create new column — create-column","text":"","code":"create_column_ui(id)  create_column_server(   id,   data_r = reactive(NULL),   allowed_operations = list_allowed_operations() )  list_allowed_operations()  modal_create_column(   id,   title = i18n$t(\"Create a new column\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_create_column(   id,   title = i18n$t(\"Create a new column\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create new column — create-column","text":"id Module's ID. data_r shiny::reactive() function returning data.frame. allowed_operations list allowed operations, see details. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create new column — create-column","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Create new column — create-column","text":"User can use subset function: (, c, +, -, *, ^, %%, %/%, /, ==, >, <, !=, <=, >=, &, |, abs, sign, sqrt, ceiling, floor, trunc, cummax, cummin, cumprod, cumsum, exp, expm1, log, log10, log2, log1p, cos, cosh, sin, sinh, tan, tanh, acos, acosh, asin, asinh, atan, atanh, cospi, sinpi, tanpi, gamma, lgamma, digamma, trigamma, round, signif, max, min, range, prod, sum, , , pmin, pmax, mean, paste, paste0, substr, nchar, trimws, gsub, sub, grepl, ifelse, length, .numeric, .character, .integer, .Date, .POSIXct, .factor, factor. can add operations using allowed_operations argument,  example want allow use package lubridate, can :","code":"c(list_allowed_operations(), getNamespaceExports(\"lubridate\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create-column.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create new column — create-column","text":"","code":"library(shiny) library(reactable)  ui <- fluidPage(   theme = bslib::bs_theme(version = 5L, preset = \"bootstrap\"),   shinyWidgets::html_dependency_winbox(),   tags$h2(\"Create new column\"),   fluidRow(     column(       width = 4,       create_column_ui(\"inline\"),       actionButton(\"modal\", \"Or click here to open a modal to create a column\"),       tags$br(), tags$br(),       actionButton(\"winbox\", \"Or click here to open a WinBox to create a column\")     ),     column(       width = 8,       reactableOutput(outputId = \"table\"),       verbatimTextOutput(\"code\")     )   ) ) #> Error in create_column_ui(\"inline\"): object 'i18n' not found  server <- function(input, output, session) {    rv <- reactiveValues(data = MASS::Cars93[, c(1, 3, 4, 5, 6, 10)])    # inline mode   data_inline_r <- create_column_server(     id = \"inline\",     data_r = reactive(rv$data)   )   observeEvent(data_inline_r(), rv$data <- data_inline_r())    # modal window mode   observeEvent(input$modal, modal_create_column(\"modal\"))   data_modal_r <- create_column_server(     id = \"modal\",     data_r = reactive(rv$data)   )   observeEvent(data_modal_r(), rv$data <- data_modal_r())    # WinBox window mode   observeEvent(input$winbox, winbox_create_column(\"winbox\"))   data_winbox_r <- create_column_server(     id = \"winbox\",     data_r = reactive(rv$data)   )   observeEvent(data_winbox_r(), rv$data <- data_winbox_r())    # Show result   output$table <- renderReactable({     data <- req(rv$data)     reactable(       data = data,       bordered = TRUE,       compact = TRUE,       striped = TRUE     )   })    output$code <- renderPrint({     attr(rv$data, \"code\")   }) }  if (interactive())   shinyApp(ui, server)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a baseline table — create_baseline","title":"Create a baseline table — create_baseline","text":"Create baseline table","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a baseline table — create_baseline","text":"","code":"create_baseline(   data,   ...,   by.var,   add.p = FALSE,   add.overall = FALSE,   theme = c(\"jama\", \"lancet\", \"nejm\", \"qjecon\"),   detail_level = c(\"minimal\", \"extended\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a baseline table — create_baseline","text":"data data ... passed fun.arg baseline_table() .var specify stratification variable add.p add comparison/p-value add.overall add overall column theme set table theme detail_level specify detail level. Either \"minimal\" \"extended\".","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a baseline table — create_baseline","text":"gtsummary table list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_baseline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a baseline table — create_baseline","text":"","code":"mtcars |> create_baseline(by.var = \"gear\", add.p = \"yes\" == \"yes\")     Characteristic       3 N = 15       4 N = 12       5 N = 5       p-value1     mpg, Median (IQR) 15.5 (14.3 – 18.7) 22.8 (21.0 – 28.9) 19.7 (15.8 – 26.0) <0.001cyl, n (%)    <0.001    4 1 (6.7) 8 (67) 2 (40)     6 2 (13) 4 (33) 1 (20)     8 12 (80) 0 (0) 2 (40) disp, Median (IQR) 318 (276 – 400) 131 (79 – 160) 145 (120 – 301) <0.001hp, Median (IQR) 180 (150 – 215) 94 (66 – 110) 175 (113 – 264) <0.001drat, Median (IQR) 3.08 (3.00 – 3.21) 3.92 (3.90 – 4.10) 3.77 (3.62 – 4.22) <0.001wt, Median (IQR) 3.73 (3.44 – 4.07) 2.70 (2.07 – 3.17) 2.77 (2.14 – 3.17) <0.001qsec, Median (IQR) 17.42 (17.02 – 18.00) 18.76 (18.41 – 19.69) 15.50 (14.60 – 16.70) 0.002vs, n (%) 3 (20) 10 (83) 1 (20) 0.001am, n (%) 0 (0) 8 (67) 5 (100) <0.001carb, n (%)    0.24    1 3 (20) 4 (33) 0 (0)     2 4 (27) 4 (33) 2 (40)     3 3 (20) 0 (0) 0 (0)     4 5 (33) 4 (33) 1 (20)     6 0 (0) 0 (0) 1 (20)     8 0 (0) 0 (0) 1 (20) 1 Kruskal-Wallis rank sum test; Fisher’s exact test     mtcars |> create_baseline(by.var = \"gear\", detail_level = \"extended\")     Characteristic       3 N = 15       4 N = 12       5 N = 5     mpg       Median (Q1, Q3) 15.5 (14.3, 18.7) 22.8 (21.0, 28.9) 19.7 (15.8, 26.0)    Mean (SD) 16.1 (3.4) 24.5 (5.3) 21.4 (6.7)    Min, Max 10.4, 21.5 17.8, 33.9 15.0, 30.4cyl, n (%)       4 1 (6.7) 8 (67) 2 (40)    6 2 (13) 4 (33) 1 (20)    8 12 (80) 0 (0) 2 (40)disp       Median (Q1, Q3) 318 (276, 400) 131 (79, 160) 145 (120, 301)    Mean (SD) 326 (95) 123 (39) 202 (115)    Min, Max 120, 472 71, 168 95, 351hp       Median (Q1, Q3) 180 (150, 215) 94 (66, 110) 175 (113, 264)    Mean (SD) 176 (48) 90 (26) 196 (103)    Min, Max 97, 245 52, 123 91, 335drat       Median (Q1, Q3) 3.08 (3.00, 3.21) 3.92 (3.90, 4.10) 3.77 (3.62, 4.22)    Mean (SD) 3.13 (0.27) 4.04 (0.31) 3.92 (0.39)    Min, Max 2.76, 3.73 3.69, 4.93 3.54, 4.43wt       Median (Q1, Q3) 3.73 (3.44, 4.07) 2.70 (2.07, 3.17) 2.77 (2.14, 3.17)    Mean (SD) 3.89 (0.83) 2.62 (0.63) 2.63 (0.82)    Min, Max 2.47, 5.42 1.62, 3.44 1.51, 3.57qsec       Median (Q1, Q3) 17.42 (17.02, 18.00) 18.76 (18.41, 19.69) 15.50 (14.60, 16.70)    Mean (SD) 17.69 (1.35) 18.97 (1.61) 15.64 (1.13)    Min, Max 15.41, 20.22 16.46, 22.90 14.50, 16.90vs, n (%)       0 12 (80) 2 (17) 4 (80)    1 3 (20) 10 (83) 1 (20)am, n (%)       0 15 (100) 4 (33) 0 (0)    1 0 (0) 8 (67) 5 (100)carb, n (%)       1 3 (20) 4 (33) 0 (0)    2 4 (27) 4 (33) 2 (40)    3 3 (20) 0 (0) 0 (0)    4 5 (33) 4 (33) 1 (20)    6 0 (0) 0 (0) 1 (20)    8 0 (0) 0 (0) 1 (20)mtcars |> create_baseline(by.var = \"gear\", detail_level = \"extended\",type = list(gtsummary::all_dichotomous() ~ \"categorical\"),theme=\"nejm\")     Characteristic       3 N = 151       4 N = 121       5 N = 51     mpg 15.5 (14.3 – 18.7) 22.8 (21.0 – 28.9) 19.7 (15.8 – 26.0)cyl       4 1 (6.7) 8 (67) 2 (40)    6 2 (13) 4 (33) 1 (20)    8 12 (80) 0 (0) 2 (40)disp 318 (276 – 400) 131 (79 – 160) 145 (120 – 301)hp 180 (150 – 215) 94 (66 – 110) 175 (113 – 264)drat 3.08 (3.00 – 3.21) 3.92 (3.90 – 4.10) 3.77 (3.62 – 4.22)wt 3.73 (3.44 – 4.07) 2.70 (2.07 – 3.17) 2.77 (2.14 – 3.17)qsec 17.42 (17.02 – 18.00) 18.76 (18.41 – 19.69) 15.50 (14.60 – 16.70)vs       0 12 (80) 2 (17) 4 (80)    1 3 (20) 10 (83) 1 (20)am       0 15 (100) 4 (33) 0 (0)    1 0 (0) 8 (67) 5 (100)carb       1 3 (20) 4 (33) 0 (0)    2 4 (27) 4 (33) 2 (40)    3 3 (20) 0 (0) 0 (0)    4 5 (33) 4 (33) 1 (20)    6 0 (0) 0 (0) 1 (20)    8 0 (0) 0 (0) 1 (20)1 Median (IQR); n (%)      create_baseline(default_parsing(mtcars), by.var = \"am\", add.p = FALSE, add.overall = FALSE, theme = \"lancet\")     Characteristic       FALSE N = 191       TRUE N = 131     mpg 17·3 (14·7 – 19·2) 22·8 (21·0 – 30·4)cyl      4 3 (16%) 8 (62%)    6 4 (21%) 3 (23%)    8 12 (63%) 2 (15%)disp 276 (168 – 360) 120 (79 – 160)hp 175 (110 – 205) 109 (66 – 113)drat 3·15 (3·07 – 3·70) 4·08 (3·85 – 4·22)wt 3·52 (3·44 – 3·85) 2·32 (1·94 – 2·78)qsec 17·82 (17·05 – 19·44) 17·02 (16·46 – 18·61)vs 7 (37%) 7 (54%)gear      3 15 (79%) 0 (0%)    4 4 (21%) 8 (62%)    5 0 (0%) 5 (38%)carb      1 3 (16%) 4 (31%)    2 6 (32%) 4 (31%)    3 3 (16%) 0 (0%)    4 7 (37%) 3 (23%)    6 0 (0%) 1 (7·7%)    8 0 (0%) 1 (7·7%)1 Median (IQR); n (%)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":null,"dir":"Reference","previous_headings":"","what":"Create summetric log ticks — create_log_tics","title":"Create summetric log ticks — create_log_tics","text":"Create summetric log ticks","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create summetric log ticks — create_log_tics","text":"","code":"create_log_tics(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create summetric log ticks — create_log_tics","text":"data numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create summetric log ticks — create_log_tics","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create summetric log ticks — create_log_tics","text":"","code":"c(sample(seq(.1, 1, .1), 3), sample(1:10, 3)) |> create_log_tics() #>  [1]  0.10  0.20  0.30  0.50  0.90  1.00  1.11  2.00  3.33  5.00 10.00"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a data overview datagrid — create_overview_datagrid","title":"Create a data overview datagrid — create_overview_datagrid","text":"Create data overview datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a data overview datagrid — create_overview_datagrid","text":"","code":"create_overview_datagrid(data, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a data overview datagrid — create_overview_datagrid","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a data overview datagrid — create_overview_datagrid","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a data overview datagrid — create_overview_datagrid","text":"","code":"mtcars |>   overview_vars() |>   create_overview_datagrid()      {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\" 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'%';}\"},{\"header\":\"Unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}},\"resizable\":true},{\"header\":\"Distribution\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}},\"resizable\":true,\"width\":120}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"default\",\"themeOptions\":{\"selection\":{},\"scrollbar\":{},\"outline\":{},\"frozenBorder\":{},\"area\":{\"header\":{\"border\":\"#4C566A\"},\"body\":{},\"summary\":{}},\"row\":{\"odd\":{},\"even\":{},\"dummy\":{},\"hover\":{}},\"cell\":{\"normal\":{\"background\":\"#FFF\",\"border\":\"#D8DEE9\",\"showVerticalBorder\":true,\"showHorizontalBorder\":true},\"header\":{\"border\":\"#D8DEE9\"},\"rowHeader\":{},\"summary\":{\"border\":\"#D8DEE9\",\"showVerticalBorder\":true,\"showHorizontalBorder\":true},\"selectedHeader\":{},\"selectedRowHeader\":{},\"focused\":{},\"focusedInactive\":{},\"required\":{},\"editable\":{},\"disabled\":{},\"invalid\":{}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.0.renderer.type\",\"options.columns.4.formatter\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":null,"dir":"Reference","previous_headings":"","what":"Custom theme based on unity — custom_theme","title":"Custom theme based on unity — custom_theme","text":"Custom theme based unity","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Custom theme based on unity — custom_theme","text":"","code":"custom_theme(   ...,   version = 5,   primary = FreesearchR_colors(\"primary\"),   secondary = FreesearchR_colors(\"secondary\"),   bootswatch = \"united\",   base_font = bslib::font_google(\"Montserrat\"),   heading_font = bslib::font_google(\"Public Sans\", wght = \"700\"),   code_font = bslib::font_google(\"Open Sans\"),   success = FreesearchR_colors(\"success\"),   info = FreesearchR_colors(\"info\"),   warning = FreesearchR_colors(\"warning\"),   danger = FreesearchR_colors(\"danger\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Custom theme based on unity — custom_theme","text":"... everything passed bslib::bs_theme()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/custom_theme.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Custom theme based on unity — custom_theme","text":"theme list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Convert Numeric to Factor — cut-variable","title":"Module to Convert Numeric to Factor — cut-variable","text":"module contain interface cut numeric several intervals.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Convert Numeric to Factor — cut-variable","text":"","code":"cut_variable_ui(id)  cut_variable_server(id, data_r = reactive(NULL))  modal_cut_variable(   id,   title = i18n$t(\"Convert Numeric to Factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Convert Numeric to Factor — cut-variable","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut-variable.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Convert Numeric to Factor — cut-variable","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_methods.html","id":null,"dir":"Reference","previous_headings":"","what":"Library of cut methods with descriptions — cut_methods","title":"Library of cut methods with descriptions — cut_methods","text":"Library cut methods descriptions","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_methods.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Library of cut methods with descriptions — cut_methods","text":"","code":"cut_methods()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_methods.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Library of cut methods with descriptions — cut_methods","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended cutting function with fall-back to the native base::cut — cut_var","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"Extended cutting function fall-back native base::cut Simplify factor top bottom n levels Subset first part string factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"","code":"cut_var(x, ...)  # Default S3 method cut_var(x, ...)  # S3 method for class 'hms' cut_var(x, breaks, ...)  # S3 method for class 'POSIXt' cut_var(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'POSIXct' cut_var(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'Date' cut_var(x, breaks = NULL, start.on.monday = TRUE, ...)  # S3 method for class 'factor' cut_var(x, breaks = NULL, type = c(\"top\", \"bottom\"), other = \"Other\", ...)  # S3 method for class 'character' cut_var(x, breaks = NULL, type = c(\"characters\", \"words\"), ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"x object inheriting class \"POSIXct\" ... passed type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"factor factor factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/cut_var.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended cutting function with fall-back to the native base::cut — cut_var","text":"","code":"readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(2) #> [1] 01:00:20 01:00:20 01:00:20 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:20 #> 03:01:20 #> 21:20:20 #> Levels: 01:00:20 03:01:20 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(\"min\") #> [1] 01:00:00 03:00:00 01:20:00 08:20:00 21:20:00 03:02:00 #> attr(,\"brks\") #> 01:00:00 #> 01:20:00 #> 03:00:00 #> 03:02:00 #> 08:20:00 #> 21:20:00 #> 21:20:20 #> Levels: 01:00:00 01:20:00 03:00:00 03:02:00 08:20:00 21:20:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(breaks = \"hour\") #> [1] 01:00:00 03:00:00 01:00:00 08:00:00 21:00:00 03:00:00 #> attr(,\"brks\") #> 01:00:00 #> 03:00:00 #> 08:00:00 #> 21:00:00 #> 21:20:20 #> Levels: 01:00:00 03:00:00 08:00:00 21:00:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut_var(breaks = hms::as_hms(c(\"01:00:00\", \"03:01:20\", \"9:20:20\"))) #> [1] 01:00:00 01:00:00 01:00:00 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:00 #> 03:01:20 #> 09:20:20 #> Levels: 01:00:00 03:01:20 d_t <- readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) f <- d_t |> cut_var(2) readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) |> cut_var(breaks = lubridate::as_datetime(c(hms::as_hms(levels(f)), hms::as_hms(max(d_t, na.rm = TRUE) + 1))), right = FALSE) #> [1] 01:00:20 02:10:20 01:00:20 02:10:20 <NA>     #> attr(,\"brks\") #> 01:00:20 #> 02:10:20 #> 03:02:21 #> Levels: 01:00:20 02:10:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(2) #> [1] 1992-02-01 01:00:20 1992-02-01 01:00:20 1992-02-01 01:00:20 #> [4] 1992-02-01 01:00:20 1999-02-01 21:20:20 1992-02-01 01:00:20 #> Levels: 1992-02-01 01:00:20 1999-02-01 21:20:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = \"weekday\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = \"month_only\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = NULL, format = \"%A-%H\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = NULL, format = \"%W\") #> Error in cut.POSIXt(x, ...): invalid specification of 'breaks' as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(2) #> [1] 1992-02-01 1992-02-01 1992-02-01 1992-02-01 1999-02-01 1992-02-01 #> Levels: 1992-02-01 1999-02-01 as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(breaks = \"weekday\") #> Error in cut.Date(x, ...): invalid specification of 'breaks' as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut_var(format = \"%W\") #> Error in cut.Date(x, ...): argument \"breaks\" is missing, with no default mtcars$carb |>   as.factor() |>   cut_var(2) |>   table() #>  #>     2     4 Other  #>    10    10    12   mtcars$carb |>   as.factor() |>   cut_var(20, \"bottom\") |>   table() #>  #>     2     4     1 Other  #>    10    10     7     5  c(\"Sunday\", \"This week is short\") |> cut_var(breaks = 3) #> [1] Sun Thi #> attr(,\"brks\") #> [1] 3 #> Levels: Sun Thi"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-correlations","title":"Data correlations evaluation module — data-correlations","text":"Data correlations evaluation module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-correlations","text":"","code":"data_correlations_ui(id, ...)  data_correlations_server(   id,   data,   include.class = NULL,   cutoff = 0.7,   warning_str =     i18n$t(\"The following variable pairs are highly correlated: {sentence_paste(.x,and_str)}.\\nConsider excluding one {more}from the dataset to ensure variables are independent.\"),   warning_no_str = i18n$t(\"No variables have a correlation measure above the threshold.\"),   and_str = i18n$t(\"and\"),   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-correlations","text":"id id ... arguments passed toastui::datagrid data data include.class character vector classes include. Default NULL cutoff numeric warning_str Character string. Exposed allow dynamic translations warning_no_str Character string. Exposed allow dynamic translations and_strCharacter string. Exposed allow dynamic translations","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-correlations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-correlations","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-missings","title":"Data correlations evaluation module — data-missings","text":"Data correlations evaluation module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-missings","text":"","code":"data_missings_ui(id, ...)  data_missings_server(id, data, max_level = 20, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-missings","text":"id Module id ... additional UI elements show table overview data data output.format output format","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-missings.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-missings","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-plots","title":"Data correlations evaluation module — data-plots","text":"Data correlations evaluation module Wrapper create plot based provided type Single vertical barplot Beautiful box plot(s) Create nice box-plots Nice horizontal stacked bars (Grotta bars) Plot nice ridge plot Readying data sankey plot Beautiful sankey plot option split tertiary group Beautiful violin plot Beatiful violin plot","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-plots","text":"","code":"data_visuals_ui(id, tab_title = \"Plots\", ...)  data_visuals_server(id, data, ...)  create_plot(data, type, pri, sec, ter = NULL, ...)  plot_bar_single(   data,   pri,   sec = NULL,   style = c(\"stack\", \"dodge\", \"fill\"),   max_level = 30 )  plot_box(data, pri, sec, ter = NULL, ...)  plot_box_single(data, pri, sec = NULL, seed = 2103)  plot_hbars(data, pri, sec, ter = NULL)  plot_ridge(data, x, y, z = NULL, ...)  sankey_ready(data, pri, sec, numbers = \"count\", ...)  plot_sankey(   data,   pri,   sec,   ter = NULL,   color.group = \"pri\",   colors = NULL,   missing.level = \"Missing\" )  plot_scatter(data, pri, sec, ter = NULL)  plot_violin(data, pri, sec, ter = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-plots","text":"id Module id. (Use 'ns(\"id\")') ... passed wrap_plot_list data data frame type plot type (derived possible_plots() matches custom function) pri primary variable sec secondary variable ter tertiary variable style barplot style passed geom_bar position argument. One c(\"stack\", \"dodge\", \"fill\")","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-plots","text":"Shiny ui module shiny server module ggplot2 object ggplot object ggplot2 object ggplot object ggplot2 object ggplot2 object data.frame ggplot2 object ggplot2 object ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data correlations evaluation module — data-plots","text":"","code":"create_plot(mtcars, \"plot_violin\", \"mpg\", \"cyl\") |> attributes() #> $class #> [1] \"ggplot2::ggplot\" \"ggplot\"          \"ggplot2::gg\"     \"S7_object\"       #> [5] \"gg\"              #>  #> $S7_class #> <ggplot2::ggplot> class #> @ parent     : <ggplot2::gg> #> @ constructor: function(data, ..., layers, scales, guides, mapping, theme, coordinates, facet, layout, labels, meta, plot_env) {...} #> @ validator  : <NULL> #> @ properties : #>  $ data       : <ANY>              #>  $ layers     : <list>             #>  $ scales     : S3<ScalesList>     #>  $ guides     : S3<Guides>         #>  $ mapping    : <ggplot2::mapping> #>  $ theme      : <ggplot2::theme>   #>  $ coordinates: S3<Coord>          #>  $ facet      : S3<Facet>          #>  $ layout     : S3<Layout>         #>  $ labels     : <ggplot2::labels>  #>  $ meta       : <list>             #>  $ plot_env   : <environment>      #>  #> $data #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2 #>  #> $layers #> $layers$geom_violin #> geom_violin: na.rm = FALSE, orientation = NA, quantile_gp = list(colour = NULL, linetype = 0, linewidth = NULL) #> stat_ydensity: trim = TRUE, scale = area, na.rm = FALSE, orientation = NA, bounds = c(-Inf, Inf) #> position_dodge  #>  #> $layers$geom_point #> mapping: y = ~.data$Mean  #> geom_point: na.rm = FALSE #> stat_identity: na.rm = FALSE #> position_identity  #>  #> $layers$geom_errorbar #> mapping: y = ~.data$Mean, ymin = ~dataSummary[, 5], ymax = ~dataSummary[, 6]  #> geom_errorbar: na.rm = FALSE, orientation = NA, lineend = butt, width = 0.1 #> stat_identity: na.rm = FALSE #> position_identity  #>  #>  #> $scales #> <ggproto object: Class ScalesList, gg> #>     add: function #>     add_defaults: function #>     add_missing: function #>     backtransform_df: function #>     clone: function #>     find: function #>     get_scales: function #>     has_scale: function #>     input: function #>     map_df: function #>     n: function #>     non_position_scales: function #>     scales: list #>     set_palettes: function #>     train_df: function #>     transform_df: function #>     super:  <ggproto object: Class ScalesList, gg> #>  #> $guides #> <Guides[0] ggproto object> #>  #> <empty> #>  #> $mapping #> Aesthetic mapping:  #> * `x`    -> `.data[[\"cyl\"]]` #> * `y`    -> `.data[[\"mpg\"]]` #> * `fill` -> `.data[[\"cyl\"]]` #>  #> $theme #> <theme> List of 144 #>  $ line                            : <ggplot2::element_line> #>   ..@ colour       : chr \"black\" #>   ..@ linewidth    : num 1.09 #>   ..@ linetype     : num 1 #>   ..@ lineend      : chr \"butt\" #>   ..@ linejoin     : chr \"round\" #>   ..@ arrow        : logi FALSE #>   ..@ arrow.fill   : chr \"black\" #>   ..@ inherit.blank: logi TRUE #>  $ rect                            : <ggplot2::element_rect> #>   ..@ fill         : chr \"white\" #>   ..@ colour       : chr \"black\" #>  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face         : NULL #>   ..@ italic       : chr NA #>   ..@ fontweight   : num NA #>   ..@ fontwidth    : num NA #>   ..@ colour       : NULL #>   ..@ size         : NULL #>   ..@ hjust        : num 0 #>   ..@ vjust        : NULL #>   ..@ angle        : NULL #>   ..@ lineheight   : NULL #>   ..@ margin       : NULL #>   ..@ debug        : NULL #>   ..@ inherit.blank: logi TRUE #>  $ legend.title.position           : NULL #>  $ legend.position                 : chr \"none\" #>  $ legend.position.inside          : NULL #>  $ legend.direction                : NULL #>  $ legend.byrow                    : NULL #>  $ legend.justification            : chr \"center\" #>  $ legend.justification.top        : NULL #>  $ legend.justification.bottom     : NULL #>  $ legend.justification.left       : NULL #>  $ legend.justification.right      : NULL #>  $ legend.justification.inside     : NULL #>   [list output truncated] #>  @ complete: logi TRUE #>  @ validate: logi TRUE #>  #> $coordinates #> <ggproto object: Class CoordCartesian, Coord, gg> #>     aspect: function #>     backtransform_range: function #>     clip: on #>     default: TRUE #>     distance: function #>     draw_panel: function #>     expand: TRUE #>     is_free: function #>     is_linear: function #>     labels: function #>     limits: list #>     modify_scales: function #>     range: function #>     ratio: NULL #>     render_axis_h: function #>     render_axis_v: function #>     render_bg: function #>     render_fg: function #>     reverse: none #>     setup_data: function #>     setup_layout: function #>     setup_panel_guides: function #>     setup_panel_params: function #>     setup_params: function #>     train_panel_guides: function #>     transform: function #>     super:  <ggproto object: Class CoordCartesian, Coord, gg> #>  #> $facet #> <ggproto object: Class FacetNull, Facet, gg> #>     attach_axes: function #>     attach_strips: function #>     compute_layout: function #>     draw_back: function #>     draw_front: function #>     draw_labels: function #>     draw_panel_content: function #>     draw_panels: function #>     finish_data: function #>     format_strip_labels: function #>     init_gtable: function #>     init_scales: function #>     map_data: function #>     params: list #>     set_panel_size: function #>     setup_data: function #>     setup_panel_params: function #>     setup_params: function #>     shrink: TRUE #>     train_scales: function #>     vars: function #>     super:  <ggproto object: Class FacetNull, Facet, gg> #>  #> $layout #> <ggproto object: Class Layout, gg> #>     coord: NULL #>     coord_params: list #>     facet: NULL #>     facet_params: list #>     finish_data: function #>     get_scales: function #>     layout: NULL #>     map_position: function #>     panel_params: NULL #>     panel_scales_x: NULL #>     panel_scales_y: NULL #>     render: function #>     render_labels: function #>     reset_scales: function #>     resolve_label: function #>     setup: function #>     setup_panel_guides: function #>     setup_panel_params: function #>     train_position: function #>     super:  <ggproto object: Class Layout, gg> #>  #> $labels #> <ggplot2::labels> List of 2 #>  $ x: chr \"cyl\" #>  $ y: chr \"mpg\" #>  #> $meta #> list() #>  #> $plot_env #> <environment: 0x564345c05938> #>  #> $code #> FreesearchR::plot_violin(pri = \"mpg\", sec = \"cyl\", ter = NULL) #>  mtcars |>   dplyr::mutate(cyl = factor(cyl), am = factor(am)) |>   plot_bar_single(pri = \"cyl\", sec = \"am\", style = \"fill\")   mtcars |>   dplyr::mutate(cyl = factor(cyl), am = factor(am)) |>   plot_bar_single(pri = \"cyl\", style = \"stack\")  mtcars |> plot_box(pri = \"mpg\", sec = \"gear\") #> Error in loadNamespace(x): there is no package called ‘viridis’ mtcars |> plot_box(pri = \"mpg\", sec=\"cyl\") #> Error in loadNamespace(x): there is no package called ‘viridis’ mtcars |>   default_parsing() |>   plot_box(pri = \"mpg\", sec = \"cyl\", ter = \"gear\") #> Error in loadNamespace(x): there is no package called ‘viridis’ mtcars |>   default_parsing() |>   plot_box(pri = \"mpg\", sec = \"cyl\", ter = \"gear\",axis.font.family=\"mono\") #> Error in loadNamespace(x): there is no package called ‘viridis’ mtcars |> plot_box_single(\"mpg\") #> Error in loadNamespace(x): there is no package called ‘viridis’ mtcars |> plot_box_single(\"mpg\",\"cyl\") #> Error in loadNamespace(x): there is no package called ‘viridis’ gtsummary::trial |> plot_box_single(\"age\",\"trt\") #> Error in loadNamespace(x): there is no package called ‘viridis’ mtcars |> plot_hbars(pri = \"carb\", sec = \"cyl\") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |> plot_hbars(pri = \"carb\", sec = \"cyl\", ter=\"am\") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |> plot_hbars(pri = \"carb\", sec = NULL) #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |>   default_parsing() |>   plot_ridge(x = \"mpg\", y = \"cyl\") #> Picking joint bandwidth of 1.38  mtcars |> plot_ridge(x = \"mpg\", y = \"cyl\", z = \"gear\") #> Picking joint bandwidth of 1.52 #> Warning: The following aesthetics were dropped during statistical transformation: y and #> fill. #> ℹ This can happen when ggplot fails to infer the correct grouping structure in #>   the data. #> ℹ Did you forget to specify a `group` aesthetic or to convert a numerical #>   variable into a factor? #> Error in ggridges::geom_density_ridges(): Problem while setting up geom. #> ℹ Error occurred in the 1st layer. #> Caused by error in `compute_geom_1()`: #> ! `geom_density_ridges()` requires the following missing aesthetics: y. ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = sample(c(letters[1:4], NA), 100, TRUE, prob = c(rep(.23, 4), .08))) ds |> sankey_ready(\"first\", \"last\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx          ly          #>    <fct> <fct> <int>  <int>  <int> <fct>       <fct>       #>  1 a     c         7     24     23 \"a\\n(n=24)\" \"c\\n(n=23)\" #>  2 a     b         6     24     25 \"a\\n(n=24)\" \"b\\n(n=25)\" #>  3 a     d         2     24     18 \"a\\n(n=24)\" \"d\\n(n=18)\" #>  4 a     a         8     24     29 \"a\\n(n=24)\" \"a\\n(n=29)\" #>  5 a     NA        1     24      5 \"a\\n(n=24)\"  NA         #>  6 c     c         1     24     23 \"c\\n(n=24)\" \"c\\n(n=23)\" #>  7 c     b        10     24     25 \"c\\n(n=24)\" \"b\\n(n=25)\" #>  8 c     d         3     24     18 \"c\\n(n=24)\" \"d\\n(n=18)\" #>  9 c     a         7     24     29 \"c\\n(n=24)\" \"a\\n(n=29)\" #> 10 c     NA        3     24      5 \"c\\n(n=24)\"  NA         #> 11 d     c         8     35     23 \"d\\n(n=35)\" \"c\\n(n=23)\" #> 12 d     b         6     35     25 \"d\\n(n=35)\" \"b\\n(n=25)\" #> 13 d     d        11     35     18 \"d\\n(n=35)\" \"d\\n(n=18)\" #> 14 d     a        10     35     29 \"d\\n(n=35)\" \"a\\n(n=29)\" #> 15 b     c         7     17     23 \"b\\n(n=17)\" \"c\\n(n=23)\" #> 16 b     b         3     17     25 \"b\\n(n=17)\" \"b\\n(n=25)\" #> 17 b     d         2     17     18 \"b\\n(n=17)\" \"d\\n(n=18)\" #> 18 b     a         4     17     29 \"b\\n(n=17)\" \"a\\n(n=29)\" #> 19 b     NA        1     17      5 \"b\\n(n=17)\"  NA         ds |> sankey_ready(\"first\", \"last\", numbers = \"percentage\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx         ly         #>    <fct> <fct> <int>  <int>  <int> <fct>      <fct>      #>  1 a     c         7     24     23 \"a\\n(24%)\" \"c\\n(23%)\" #>  2 a     b         6     24     25 \"a\\n(24%)\" \"b\\n(25%)\" #>  3 a     d         2     24     18 \"a\\n(24%)\" \"d\\n(18%)\" #>  4 a     a         8     24     29 \"a\\n(24%)\" \"a\\n(29%)\" #>  5 a     NA        1     24      5 \"a\\n(24%)\"  NA        #>  6 c     c         1     24     23 \"c\\n(24%)\" \"c\\n(23%)\" #>  7 c     b        10     24     25 \"c\\n(24%)\" \"b\\n(25%)\" #>  8 c     d         3     24     18 \"c\\n(24%)\" \"d\\n(18%)\" #>  9 c     a         7     24     29 \"c\\n(24%)\" \"a\\n(29%)\" #> 10 c     NA        3     24      5 \"c\\n(24%)\"  NA        #> 11 d     c         8     35     23 \"d\\n(35%)\" \"c\\n(23%)\" #> 12 d     b         6     35     25 \"d\\n(35%)\" \"b\\n(25%)\" #> 13 d     d        11     35     18 \"d\\n(35%)\" \"d\\n(18%)\" #> 14 d     a        10     35     29 \"d\\n(35%)\" \"a\\n(29%)\" #> 15 b     c         7     17     23 \"b\\n(17%)\" \"c\\n(23%)\" #> 16 b     b         3     17     25 \"b\\n(17%)\" \"b\\n(25%)\" #> 17 b     d         2     17     18 \"b\\n(17%)\" \"d\\n(18%)\" #> 18 b     a         4     17     29 \"b\\n(17%)\" \"a\\n(29%)\" #> 19 b     NA        1     17      5 \"b\\n(17%)\"  NA        data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   sankey_ready(\"first\", \"last\") #> # A tibble: 8 × 7 #>   first last      n gx.sum gy.sum lx          ly              #>   <fct> <fct> <int>  <int>  <int> <fct>       <fct>           #> 1 d     FALSE    13     21     66 \"d\\n(n=21)\" \"FALSE\\n(n=66)\" #> 2 d     TRUE      8     21     34 \"d\\n(n=21)\" \"TRUE\\n(n=34)\"  #> 3 b     FALSE    18     28     66 \"b\\n(n=28)\" \"FALSE\\n(n=66)\" #> 4 b     TRUE     10     28     34 \"b\\n(n=28)\" \"TRUE\\n(n=34)\"  #> 5 a     FALSE    19     25     66 \"a\\n(n=25)\" \"FALSE\\n(n=66)\" #> 6 a     TRUE      6     25     34 \"a\\n(n=25)\" \"TRUE\\n(n=34)\"  #> 7 c     FALSE    16     26     66 \"c\\n(n=26)\" \"FALSE\\n(n=66)\" #> 8 c     TRUE     10     26     34 \"c\\n(n=26)\" \"TRUE\\n(n=34)\"  ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey(\"first\", \"last\") #> Loading required package: ggplot2  ds |> plot_sankey(\"first\", \"last\", color.group = \"sec\")  ds |> plot_sankey(\"first\", \"last\", ter = \"g\", color.group = \"sec\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  mtcars |>   default_parsing() |>   plot_sankey(\"cyl\", \"gear\", \"am\", color.group = \"pri\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  ## In this case, the last plot as the secondary variable in wrong order ## Dont know why... mtcars |>   default_parsing() |>   plot_sankey(\"cyl\", \"gear\", \"vs\", color.group = \"pri\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  mtcars |> plot_scatter(pri = \"mpg\", sec = \"wt\") #> Ignoring unknown labels: #> • legend.title : \"\"  mtcars |> plot_violin(pri = \"mpg\", sec = \"cyl\", ter = \"gear\") #> Error in plot_violin(mtcars, pri = \"mpg\", sec = \"cyl\", ter = \"gear\"): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":null,"dir":"Reference","previous_headings":"","what":"Data summary module — data-summary","title":"Data summary module — data-summary","text":"Data summary module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data summary module — data-summary","text":"","code":"data_summary_ui(id)  data_summary_server(id, data, color.main, color.sec, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data summary module — data-summary","text":"id Module id. (Use 'ns(\"id\")') data data color.main main color color.sec secondary color ... arguments passed create_overview_datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data-summary.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data summary module — data-summary","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":null,"dir":"Reference","previous_headings":"","what":"Ultra short data dascription — data_description","title":"Ultra short data dascription — data_description","text":"Ultra short data dascription","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Ultra short data dascription — data_description","text":"","code":"data_description(data, data_text = \"Data\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Ultra short data dascription — data_description","text":"data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Ultra short data dascription — data_description","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_description.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Ultra short data dascription — data_description","text":"","code":"data.frame(   sample(1:8, 20, TRUE),   sample(c(1:8, NA), 20, TRUE) ) |> data_description() #> Error in data_description(data.frame(sample(1:8, 20, TRUE), sample(c(1:8,     NA), 20, TRUE))): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":null,"dir":"Reference","previous_headings":"","what":"Data summary for printing visual summary — data_summary_gather","title":"Data summary for printing visual summary — data_summary_gather","text":"Data summary printing visual summary","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data summary for printing visual summary — data_summary_gather","text":"","code":"data_summary_gather(   data,   summary.fun = class,   palette.fun = viridisLite::viridis,   na.label = \"NA\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data summary for printing visual summary — data_summary_gather","text":"data data.frame summary.fun fun summarising palette.fun optionally use specific palette functions. First argument length. na.label label NA ... overflow","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data summary for printing visual summary — data_summary_gather","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data summary for printing visual summary — data_summary_gather","text":"","code":"mtcars |> data_summary_gather() |> names() #> [1] \"data\"        \"colors\"      \"labels\"      \"summary.fun\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":null,"dir":"Reference","previous_headings":"","what":"Data type assessment. — data_type","title":"Data type assessment. — data_type","text":"overall native typeof. used assess meaningful \"clinical\" data type.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data type assessment. — data_type","text":"","code":"data_type(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data type assessment. — data_type","text":"data vector data.frame. data frame, column evaluated.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data type assessment. — data_type","text":"outcome type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data type assessment. — data_type","text":"","code":"mtcars |>   default_parsing() |>   lapply(data_type) #> $mpg #> [1] \"continuous\" #>  #> $cyl #> [1] \"categorical\" #>  #> $disp #> [1] \"continuous\" #>  #> $hp #> [1] \"continuous\" #>  #> $drat #> [1] \"continuous\" #>  #> $wt #> [1] \"continuous\" #>  #> $qsec #> [1] \"continuous\" #>  #> $vs #> [1] \"dichotomous\" #>  #> $am #> [1] \"dichotomous\" #>  #> $gear #> [1] \"categorical\" #>  #> $carb #> [1] \"categorical\" #>  mtcars |>   default_parsing() |>   data_type() #>           mpg           cyl          disp            hp          drat  #>  \"continuous\" \"categorical\"  \"continuous\"  \"continuous\"  \"continuous\"  #>            wt          qsec            vs            am          gear  #>  \"continuous\"  \"continuous\" \"dichotomous\" \"dichotomous\" \"categorical\"  #>          carb  #> \"categorical\"  c(1, 2) |> data_type() #> [1] \"dichotomous\" 1 |> data_type() #> [1] \"monotone\" c(rep(NA, 10)) |> data_type() #> [1] \"empty\" sample(1:100, 50) |> data_type() #> [1] \"continuous\" factor(letters[1:20]) |> data_type() #> [1] \"categorical\" as.Date(1:20) |> data_type() #> [1] \"datetime\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Filter function to filter data set by variable type — data_type_filter","title":"Filter function to filter data set by variable type — data_type_filter","text":"Filter function filter data set variable type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Filter function to filter data set by variable type — data_type_filter","text":"","code":"data_type_filter(data, type)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Filter function to filter data set by variable type — data_type_filter","text":"data data frame type vector data types (recognised: data_types)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Filter function to filter data set by variable type — data_type_filter","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Filter function to filter data set by variable type — data_type_filter","text":"","code":"default_parsing(mtcars) |>   data_type_filter(type = c(\"categorical\", \"continuous\")) |>   attributes() #> $names #> [1] \"mpg\"  \"cyl\"  \"disp\" \"hp\"   \"drat\" \"wt\"   \"qsec\" \"gear\" \"carb\" #>  #> $row.names #>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 #> [26] 26 27 28 29 30 31 32 #>  #> $class #> [1] \"tbl_df\"     \"tbl\"        \"data.frame\" #>  #> $code #> FreesearchR::data_type_filter(type = c(\"categorical\", \"continuous\" #> )) #>  default_parsing(mtcars) |>   data_type_filter(type = NULL) |>   attributes() #> $class #> [1] \"tbl_df\"     \"tbl\"        \"data.frame\" #>  #> $row.names #>  [1]  1  2  3  4  5  6  7  8  9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 #> [26] 26 27 28 29 30 31 32 #>  #> $names #>  [1] \"mpg\"  \"cyl\"  \"disp\" \"hp\"   \"drat\" \"wt\"   \"qsec\" \"vs\"   \"am\"   \"gear\" #> [11] \"carb\" #>  if (FALSE) { # \\dontrun{ default_parsing(mtcars) |> data_type_filter(type = c(\"test\", \"categorical\", \"continuous\")) } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Recognised data types from data_type — data_types","title":"Recognised data types from data_type — data_types","text":"Recognised data types data_type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Recognised data types from data_type — data_types","text":"","code":"data_types()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Recognised data types from data_type — data_types","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/data_types.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Recognised data types from data_type — data_types","text":"","code":"data_types() #> $empty #> $empty$descr #> [1] \"Variable of all NAs\" #>  #> $empty$classes #> [1] \"Any class\" #>  #>  #> $monotone #> $monotone$descr #> [1] \"Variable with only one unique value\" #>  #> $monotone$classes #> [1] \"Any class\" #>  #>  #> $dichotomous #> $dichotomous$descr #> [1] \"Variable with only two unique values\" #>  #> $dichotomous$classes #> [1] \"Any class\" #>  #>  #> $categorical #> $categorical$descr #> [1] \"Factor variable\" #>  #> $categorical$classes #> [1] \"factor (ordered or unordered)\" #>  #>  #> $text #> $text$descr #> [1] \"Character variable\" #>  #> $text$classes #> [1] \"character\" #>  #>  #> $datetime #> $datetime$descr #> [1] \"Variable of time, date or datetime values\" #>  #> $datetime$classes #> [1] \"hms, Date, POSIXct and POSIXt\" #>  #>  #> $continuous #> $continuous$descr #> [1] \"Numeric variable\" #>  #> $continuous$classes #> [1] \"numeric, integer or double\" #>  #>  #> $unknown #> $unknown$descr #> [1] \"Anything not falling within the previous\" #>  #> $unknown$classes #> [1] \"Any other class\" #>  #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.html","id":null,"dir":"Reference","previous_headings":"","what":"Defaults qmd formats — default_format_arguments","title":"Defaults qmd formats — default_format_arguments","text":"Defaults qmd formats","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Defaults qmd formats — default_format_arguments","text":"","code":"default_format_arguments()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Defaults qmd formats — default_format_arguments","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":null,"dir":"Reference","previous_headings":"","what":"Default data parsing — default_parsing","title":"Default data parsing — default_parsing","text":"Default data parsing","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Default data parsing — default_parsing","text":"","code":"default_parsing(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Default data parsing — default_parsing","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Default data parsing — default_parsing","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/default_parsing.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Default data parsing — default_parsing","text":"","code":"mtcars |> str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ... mtcars |>   default_parsing() |>   str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : Factor w/ 3 levels \"4\",\"6\",\"8\": 2 2 1 2 3 2 3 1 1 2 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : logi [1:32] FALSE FALSE TRUE TRUE FALSE TRUE ... #>  $ am  : logi [1:32] TRUE TRUE TRUE FALSE FALSE FALSE ... #>  $ gear: Factor w/ 3 levels \"3\",\"4\",\"5\": 2 2 2 1 1 1 1 2 2 2 ... #>  $ carb: Factor w/ 6 levels \"1\",\"2\",\"3\",\"4\",..: 4 4 1 1 2 1 4 2 2 4 ... head(starwars, 5) |> str() #> Error: object 'starwars' not found starwars |>   default_parsing() |>   head(5) |>   str() #> Error: object 'starwars' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":null,"dir":"Reference","previous_headings":"","what":"Detect delimiters in string based on allowed delimiters — detect_delimiter","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"Accepts repeat delimiters includes surrounding whitespace","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"","code":"detect_delimiter(data, delimiters = c(\"_\", \"-\", \";\", \"\\n\", \",\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"delimiters allowed delimiters text character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Detect delimiters in string based on allowed delimiters — detect_delimiter","text":"","code":"sapply(c(\"Walk - run\", \"Sel__Re\", \"what;now\"), detect_delimiter) #> Walk - run    Sel__Re   what;now  #>      \" - \"       \"__\"        \";\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":null,"dir":"Reference","previous_headings":"","what":"Dimensions validation — dim_change_call","title":"Dimensions validation — dim_change_call","text":"Dimensions validation","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Dimensions validation — dim_change_call","text":"","code":"dim_change_call(before, after, fun)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Dimensions validation — dim_change_call","text":"data data fun dimension function. ncol nrow","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Dimensions validation — dim_change_call","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop empty events from REDCap export — drop_empty_event","title":"Drop empty events from REDCap export — drop_empty_event","text":"Drop empty events REDCap export","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop empty events from REDCap export — drop_empty_event","text":"","code":"drop_empty_event(data, event = \"redcap_event_name\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop empty events from REDCap export — drop_empty_event","text":"data data event \"redcap_event_name\", \"redcap_repeat_instrument\" \"redcap_repeat_instance\"","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Drop empty events from REDCap export — drop_empty_event","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":null,"dir":"Reference","previous_headings":"","what":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"Deparses expression string, substitutes native pipe adds assign","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"","code":"expression_string(data, assign.str = \"\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"data expression","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/expression_string.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Deparses expression as string, substitutes native pipe and adds assign — expression_string","text":"","code":"list(   as.symbol(paste0(\"mtcars$\", \"mpg\")),   rlang::call2(.fn = \"select\", !!!list(c(\"cyl\", \"di  sp\")), .ns = \"dplyr\"),   rlang::call2(.fn = \"default_parsing\", .ns = \"FreesearchR\") ) |>   merge_expression() |>   expression_string() #> [1] \"mtcars$mpg |>dplyr::select(c('cyl', 'di  sp')) |>FreesearchR::default_parsing()\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"Simple function apply new levels /labels factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"","code":"factor_new_levels_labels(   data,   variable,   new_variable = TRUE,   new_levels = NULL,   new_labels = NULL,   ignore = \"New label\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"variable factor variable ignore character string ignore new labels new_level new levels, length original new_label new labels, length original","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple function to apply new levels and/or labels to factor — factor_new_levels_labels","text":"","code":"data_n <- mtcars data_n$cyl <- factor(data_n$cyl) factor_new_levels_labels(data_n, \"cyl\", new_labels = c(\"four\", \"New label\", \"New label\")) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2 #>                     cyl_updated #> Mazda RX4                     6 #> Mazda RX4 Wag                 6 #> Datsun 710                 four #> Hornet 4 Drive                6 #> Hornet Sportabout             8 #> Valiant                       6 #> Duster 360                    8 #> Merc 240D                  four #> Merc 230                   four #> Merc 280                      6 #> Merc 280C                     6 #> Merc 450SE                    8 #> Merc 450SL                    8 #> Merc 450SLC                   8 #> Cadillac Fleetwood            8 #> Lincoln Continental           8 #> Chrysler Imperial             8 #> Fiat 128                   four #> Honda Civic                four #> Toyota Corolla             four #> Toyota Corona              four #> Dodge Challenger              8 #> AMC Javelin                   8 #> Camaro Z28                    8 #> Pontiac Firebird              8 #> Fiat X1-9                  four #> Porsche 914-2              four #> Lotus Europa               four #> Ford Pantera L                8 #> Ferrari Dino                  6 #> Maserati Bora                 8 #> Volvo 142E                 four"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":null,"dir":"Reference","previous_headings":"","what":"Factorize variables in data.frame — factorize","title":"Factorize variables in data.frame — factorize","text":"Factorize variables data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Factorize variables in data.frame — factorize","text":"","code":"factorize(data, vars)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Factorize variables in data.frame — factorize","text":"data data.frame vars variables force factorize","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Factorize variables in data.frame — factorize","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/factorize.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Factorize variables in data.frame — factorize","text":"","code":"factorize(mtcars, names(mtcars)) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4             21   6   160 110  3.9  2.62 16.46  0  1    4    4 #> Mazda RX4 Wag         21   6   160 110  3.9 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4   108  93 3.85  2.32 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6   258 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8   360 175 3.15  3.44 17.02  0  0    3    2 #> Valiant             18.1   6   225 105 2.76  3.46 20.22  1  0    3    1 #> Duster 360          14.3   8   360 245 3.21  3.57 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69  3.19    20  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92  3.15  22.9  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92  3.44  18.3  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92  3.44  18.9  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07  4.07  17.4  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07  3.73  17.6  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07  3.78    18  0  0    3    3 #> Cadillac Fleetwood  10.4   8   472 205 2.93  5.25 17.98  0  0    3    4 #> Lincoln Continental 10.4   8   460 215    3 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8   440 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08   2.2 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835  19.9  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97  3.7 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8   318 150 2.76  3.52 16.87  0  0    3    2 #> AMC Javelin         15.2   8   304 150 3.15 3.435  17.3  0  0    3    2 #> Camaro Z28          13.3   8   350 245 3.73  3.84 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8   400 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4    79  66 4.08 1.935  18.9  1  1    4    1 #> Porsche 914-2         26   4 120.3  91 4.43  2.14  16.7  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513  16.9  1  1    5    2 #> Ford Pantera L      15.8   8   351 264 4.22  3.17  14.5  0  1    5    4 #> Ferrari Dino        19.7   6   145 175 3.62  2.77  15.5  0  1    5    6 #> Maserati Bora         15   8   301 335 3.54  3.57  14.6  0  1    5    8 #> Volvo 142E          21.4   4   121 109 4.11  2.78  18.6  1  1    4    2"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":null,"dir":"Reference","previous_headings":"","what":"Title — file_export","title":"Title — file_export","text":"Title","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Title — file_export","text":"","code":"file_export(data, output.format = c(\"df\", \"teal\", \"list\"), filename, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Title — file_export","text":"data data output.format output filename filename ... passed ","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/file_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Title — file_export","text":"data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":null,"dir":"Reference","previous_headings":"","what":"Merges list of named arguments for qmd header generation — format_writer","title":"Merges list of named arguments for qmd header generation — format_writer","text":"Merges list named arguments qmd header generation","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merges list of named arguments for qmd header generation — format_writer","text":"","code":"format_writer(data, name)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merges list of named arguments for qmd header generation — format_writer","text":"data vector name name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/format_writer.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merges list of named arguments for qmd header generation — format_writer","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":null,"dir":"Reference","previous_headings":"","what":"Get packages containing datasets — get_data_packages","title":"Get packages containing datasets — get_data_packages","text":"Get packages containing datasets","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get packages containing datasets — get_data_packages","text":"","code":"get_data_packages()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get packages containing datasets — get_data_packages","text":"character vector packages names","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get packages containing datasets — get_data_packages","text":"","code":"if (interactive()) {    get_data_packages()  }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_fun_options","title":"Get the function options based on the selected function description — get_fun_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"get_fun_options(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_fun_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_fun_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_functions(design = \"cross-sectional\") |>   (\\(.x){     .x[[1]]   })() |>   get_fun_options() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Print label, and if missing print variable name for plots — get_label","title":"Print label, and if missing print variable name for plots — get_label","text":"Print label, missing print variable name plots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Print label, and if missing print variable name for plots — get_label","text":"","code":"get_label(data, var = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Print label, and if missing print variable name for plots — get_label","text":"data vector data frame var variable name. Optional.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Print label, and if missing print variable name for plots — get_label","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Print label, and if missing print variable name for plots — get_label","text":"","code":"mtcars |> get_label(var = \"mpg\") #> [1] \"mpg\" mtcars |> get_label() #> [1] \"mtcars\" mtcars$mpg |> get_label() #> [1] \"mtcars$mpg\" gtsummary::trial |> get_label(var = \"trt\") #> [1] \"Chemotherapy Treatment\" gtsummary::trial$trt |> get_label() #> [1] \"Chemotherapy Treatment\" 1:10 |> get_label() #> [1] \"1:10\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":null,"dir":"Reference","previous_headings":"","what":"Subset elements from list of lists — get_list_elements","title":"Subset elements from list of lists — get_list_elements","text":"General function sub-setting details stored list dictionaries.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subset elements from list of lists — get_list_elements","text":"","code":"get_list_elements(name, element, dict = cut_methods())"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Subset elements from list of lists — get_list_elements","text":"name list name lookup element element get dict dictionary use","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Subset elements from list of lists — get_list_elements","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Subset elements from list of lists — get_list_elements","text":"","code":"get_list_elements(c(\"top\", \"bottom\"), \"descr\") #> Error in cut_methods(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_plot_options","title":"Get the function options based on the selected function description — get_plot_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"get_plot_options(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_plot_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_plot_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"ls <- mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_plots() |>   (\\(.x){     .x[[1]]   })() |>   get_plot_options() #> Error in supported_plots(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily get variable icon based on data type or class — get_var_icon","title":"Easily get variable icon based on data type or class — get_var_icon","text":"Easily get variable icon based data type class","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily get variable icon based on data type or class — get_var_icon","text":"","code":"get_var_icon(data, class.type = c(\"class\", \"type\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily get variable icon based on data type or class — get_var_icon","text":"data variable data frame class.type \"type\" \"class\". Default \"class\"","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily get variable icon based on data type or class — get_var_icon","text":"svg icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily get variable icon based on data type or class — get_var_icon","text":"","code":"mtcars[1] |> get_var_icon(\"class\") #> $mpg #>  default_parsing(mtcars) |> get_var_icon() #> $mpg #>  #> $cyl #>  #> $disp #>  #> $hp #>  #> $drat #>  #> $wt #>  #> $qsec #>  #> $vs #>  #> $am #>  #> $gear #>  #> $carb #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function follows idea comment: https://stackoverflow.com/questions/38983179/-call--function--r-without-loading--package","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(x)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"x function function name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/getfun.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(\"stats::lm\") #> function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> } #> <bytecode: 0x5643483de740> #> <environment: namespace:stats>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting export objects — gg_theme_export","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"GGplot default theme plotting export objects","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"","code":"gg_theme_export()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting in Shiny — gg_theme_shiny","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"GGplot default theme plotting Shiny","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"","code":"gg_theme_shiny()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.html","id":null,"dir":"Reference","previous_headings":"","what":"Area proportional venn diagrams — ggeulerr","title":"Area proportional venn diagrams — ggeulerr","text":"slightly modified https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded functions uses eulerr::euler plot area proportional venn diagramms plots using ggplot2","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Area proportional venn diagrams — ggeulerr","text":"","code":"ggeulerr(combinations, show_quantities = TRUE, show_labels = TRUE, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Area proportional venn diagrams — ggeulerr","text":"combinations set relationships named numeric vector, matrix, data.frame(See eulerr::euler) show_quantities whether show number intersecting elements show_labels whether show set names ... arguments passed eulerr::euler","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":null,"dir":"Reference","previous_headings":"","what":"Matches pattern to vector based on match type — grepl_fix","title":"Matches pattern to vector based on match type — grepl_fix","text":"Matches pattern vector based match type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"grepl_fix(data, pattern, type = c(\"prefix\", \"infix\", \"suffix\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Matches pattern to vector based on match type — grepl_fix","text":"data vector pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\".","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Matches pattern to vector based on match type — grepl_fix","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"c(\"id\", \"age\", \"weight_0\", \"weight_1\") |> grepl_fix(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #> [1] FALSE FALSE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":null,"dir":"Reference","previous_headings":"","what":"Return if available — if_not_missing","title":"Return if available — if_not_missing","text":"Return available","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Return if available — if_not_missing","text":"","code":"if_not_missing(data, default = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Return if available — if_not_missing","text":"data vector default assigned value missings","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Return if available — if_not_missing","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Return if available — if_not_missing","text":"","code":"NULL |> if_not_missing(\"new\") #> [1] \"new\" c(2, \"a\", NA) |> if_not_missing() #> [1] \"2\" \"a\" \"See\" |> if_not_missing() #> [1] \"See\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to ease data file import — import-file-type","title":"Wrapper to ease data file import — import-file-type","text":"Wrapper ease data file import","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to ease data file import — import-file-type","text":"","code":"import_delim(file, skip, encoding, na.strings)  import_xls(file, sheet, skip, na.strings)  import_ods(file, sheet, skip, na.strings)  import_dta(file)  import_rds(file)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to ease data file import — import-file-type","text":"file path file skip number row skip encoding file encoding na.strings character(s) interpret missing values. sheet Excel files, sheet read","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file-type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to ease data file import — import-file-type","text":"data.frame data.frame data.frame data.frame data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file.html","id":null,"dir":"Reference","previous_headings":"","what":"Import data from a file — import-file","title":"Import data from a file — import-file","text":"Let user upload file import data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Import data from a file — import-file","text":"","code":"import_file_ui(   id,   title = \"\",   preview_data = TRUE,   file_extensions = c(\".csv\", \".txt\", \".xls\", \".xlsx\", \".rds\", \".fst\", \".sas7bdat\",     \".sav\"),   layout_params = c(\"dropdown\", \"inline\") )  import_file_server(   id,   btn_show_data = TRUE,   show_data_in = c(\"popup\", \"modal\"),   trigger_return = c(\"button\", \"change\"),   return_class = c(\"data.frame\", \"data.table\", \"tbl_df\", \"raw\"),   reset = reactive(NULL),   limit = 1e+05 )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Import data from a file — import-file","text":"preview_data Show preview data file input. file_extensions File extensions accepted shiny::fileInput(), can also MIME type. layout_params display import parameters : dropdown button inline file input.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Test app for the import_file module — import_file_demo_app","title":"Test app for the import_file module — import_file_demo_app","text":"Test app import_file module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"import_file_demo_app()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-file_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"if (FALSE) { # \\dontrun{ import_file_demo_app() } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.html","id":null,"dir":"Reference","previous_headings":"","what":"Import data from an Environment — import-globalenv","title":"Import data from an Environment — import-globalenv","text":"Let user select dataset environment package's environment. Modified datamods","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Import data from an Environment — import-globalenv","text":"","code":"import_globalenv_ui(   id,   globalenv = TRUE,   packages = datamods::get_data_packages(),   title = TRUE )  import_globalenv_server(   id,   btn_show_data = TRUE,   show_data_in = c(\"popup\", \"modal\"),   trigger_return = c(\"button\", \"change\"),   return_class = c(\"data.frame\", \"data.table\", \"tbl_df\", \"raw\"),   reset = reactive(NULL) )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Import data from an Environment — import-globalenv","text":"id Module's ID. globalenv Search data Global environment. packages Name packages search data. title Module's title, TRUE use default title, use NULL title shiny.tag custom one. btn_show_data Display button display data modal window import successful. show_data_in display data: \"popup\" \"modal\" window. trigger_return update selected data: \"button\" (user click button) \"change\" (time user select dataset list). return_class Class returned data: data.frame, data.table, tbl_df (tibble) raw. reset reactive function triggered resets data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":null,"dir":"Reference","previous_headings":"","what":"Split vector by an index and embed addition — index_embed","title":"Split vector by an index and embed addition — index_embed","text":"Split vector index embed addition","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split vector by an index and embed addition — index_embed","text":"","code":"index_embed(data, index, add = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split vector by an index and embed addition — index_embed","text":"data vector index split index add addition","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/index_embed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split vector by an index and embed addition — index_embed","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":null,"dir":"Reference","previous_headings":"","what":"Test class — is_any_class","title":"Test class — is_any_class","text":"Test class","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test class — is_any_class","text":"","code":"is_any_class(data, class.vec)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test class — is_any_class","text":"data data class.vec vector class names test","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test class — is_any_class","text":"factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_any_class.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test class — is_any_class","text":"","code":"if (FALSE) { # \\dontrun{ vapply(REDCapCAST::redcapcast_data, \\(.x){   is_any_class(.x, c(\"hms\", \"Date\", \"POSIXct\", \"POSIXt\")) }, logical(1)) } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"Checks elements vector equally spaced indication ID","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"is_consecutive(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"1:10 |> is_consecutive() #> [1] TRUE sample(1:100,40) |> is_consecutive() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":null,"dir":"Reference","previous_headings":"","what":"Test is date/datetime/time — is_datetime","title":"Test is date/datetime/time — is_datetime","text":"Test date/datetime/time","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test is date/datetime/time — is_datetime","text":"","code":"is_datetime(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test is date/datetime/time — is_datetime","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test is date/datetime/time — is_datetime","text":"factor","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_datetime.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test is date/datetime/time — is_datetime","text":"","code":"vapply(REDCapCAST::redcapcast_data, is_datetime, logical(1)) #>                    record_id            redcap_event_name  #>                        FALSE                        FALSE  #>     redcap_repeat_instrument       redcap_repeat_instance  #>                        FALSE                        FALSE  #>                          cpr                    inclusion  #>                        FALSE                         TRUE  #>               inclusion_time                          dob  #>                         TRUE                         TRUE  #>                          age                  age_integer  #>                        FALSE                        FALSE  #>                          sex                 cohabitation  #>                        FALSE                        FALSE  #>                 hypertension                     diabetes  #>                        FALSE                        FALSE  #>                       region baseline_data_start_complete  #>                        FALSE                        FALSE  #>                 mrs_assessed                     mrs_date  #>                        FALSE                         TRUE  #>                    mrs_score                 mrs_complete  #>                        FALSE                        FALSE  #>                      con_mrs                     con_calc  #>                        FALSE                        FALSE  #>           consensus_complete               event_datetime  #>                        FALSE                         TRUE  #>                    event_age                   event_type  #>                        FALSE                        FALSE  #>           new_event_complete  #>                        FALSE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if element is identical to the previous — is_identical_to_previous","title":"Test if element is identical to the previous — is_identical_to_previous","text":"Test element identical previous","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if element is identical to the previous — is_identical_to_previous","text":"","code":"is_identical_to_previous(data, no.name = TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if element is identical to the previous — is_identical_to_previous","text":"data data. vector, data.frame list .name logical remove names attribute testing","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if element is identical to the previous — is_identical_to_previous","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if element is identical to the previous — is_identical_to_previous","text":"","code":"c(1, 1, 2, 3, 3, 2, 4, 4) |> is_identical_to_previous() #> [1] FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE mtcars[c(1, 1, 2, 3, 3, 2, 4, 4)] |> is_identical_to_previous() #> [1] FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE list(1, 1, list(2), \"A\", \"a\", \"a\") |> is_identical_to_previous() #> [1] FALSE  TRUE FALSE FALSE FALSE  TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":null,"dir":"Reference","previous_headings":"","what":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"Determine variable data frame character contains recognized delimiters","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"","code":"is_splittable(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"data vector data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_splittable.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Determine if any variable in data frame character and contains recognized delimiters — is_splittable","text":"","code":"any(apply(mtcars, 2, is_splittable)) #> [1] FALSE is_splittable(mtcars) #>   mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb  #> FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if url is valid format for REDCap API — is_valid_redcap_url","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"Test url valid format REDCap API","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"is_valid_redcap_url(url)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"url url","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"url <- c(   \"www.example.com\",   \"redcap.your.inst/api/\",   \"https://redcap.your.inst/api/\",   \"https://your.inst/redcap/api/\",   \"https://www.your.inst/redcap/api/\" ) is_valid_redcap_url(url) #> [1] FALSE FALSE  TRUE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate REDCap token — is_valid_token","title":"Validate REDCap token — is_valid_token","text":"Validate REDCap token","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate REDCap token — is_valid_token","text":"","code":"is_valid_token(token, pattern_env = NULL, nchar = 32)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate REDCap token — is_valid_token","text":"token token pattern_env pattern","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate REDCap token — is_valid_token","text":"logical","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validate REDCap token — is_valid_token","text":"","code":"token <- paste(sample(c(1:9, LETTERS[1:6]), 32, TRUE), collapse = \"\") is_valid_token(token) #> [1] TRUE"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily launch the FreesearchR app — launch_FreesearchR","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"data.frames global environment accessible app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"","code":"launch_FreesearchR(...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"... passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"","code":"if (FALSE) { # \\dontrun{ data(mtcars) launch_FreesearchR(launch.browser = TRUE) } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":null,"dir":"Reference","previous_headings":"","what":"Limit the allowed data set size by number of cells — limit_data_size","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"function may act guard hosted app large data sets addition file size limitations. function limit data set dropping rows.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"","code":"limit_data_size(data, limit = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"data data.frame limit cell number limit. Default NULL.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Limit the allowed data set size by number of cells — limit_data_size","text":"","code":"prod(dim(mtcars)) #> [1] 352 limit_data_size(mtcars) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2 limit_data_size(mtcars,100) #>                    mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4         21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag     21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710        22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive    21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout 18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant           18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360        14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D         24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230          22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily round log scale limits for nice plots — limit_log","title":"Easily round log scale limits for nice plots — limit_log","text":"Easily round log scale limits nice plots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily round log scale limits for nice plots — limit_log","text":"","code":"limit_log(data, fun, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily round log scale limits for nice plots — limit_log","text":"data data fun rounding function (floor/ceiling) ... ignored","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily round log scale limits for nice plots — limit_log","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/limit_log.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily round log scale limits for nice plots — limit_log","text":"","code":"limit_log(-.1, floor) #> [1] 0.7 limit_log(.1, ceiling) #> [1] 2 limit_log(-2.1, ceiling) #> [1] 0.008 limit_log(2.1, ceiling) #> [1] 200"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":null,"dir":"Reference","previous_headings":"","what":"Line breaking at given number of characters for nicely plotting labels — line_break","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"Line breaking given number characters nicely plotting labels","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"line_break(data, lineLength = 20, force = FALSE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"data string lineLength maximum line length fixed flag force split exactly value given lineLength. Default FALSE, splitting spaces.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/line_break.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"\"Lorem ipsum... you know the routine\" |> line_break() #> [1] \"Lorem ipsum... you\\nknow the routine\" paste(sample(letters[1:10], 100, TRUE), collapse = \"\") |> line_break(force = TRUE) #> [1] \"gccehdajdebjihfdbcgb\\ncigaffbaadgbabdedhfc\\neaifgdbjhieacaaggaja\\ndfeediafjfibbfjihdhe\\niebfajgfhcgbidc\\n\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":null,"dir":"Reference","previous_headings":"","what":"List dataset contained in a package — list_pkg_data","title":"List dataset contained in a package — list_pkg_data","text":"List dataset contained package","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List dataset contained in a package — list_pkg_data","text":"","code":"list_pkg_data(pkg)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List dataset contained in a package — list_pkg_data","text":"pkg Name package, must installed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List dataset contained in a package — list_pkg_data","text":"character vector NULL.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List dataset contained in a package — list_pkg_data","text":"","code":"list_pkg_data(\"ggplot2\") #>  [1] \"diamonds\"       \"economics\"      \"economics_long\" \"faithfuld\"      #>  [5] \"luv_colours\"    \"midwest\"        \"mpg\"            \"msleep\"         #>  [9] \"presidential\"   \"seals\"          \"txhousing\"      #> attr(,\"package\") #> [1] \"ggplot2\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":null,"dir":"Reference","previous_headings":"","what":"Create validation data.frame — make_validation","title":"Create validation data.frame — make_validation","text":"Create validation data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create validation data.frame — make_validation","text":"","code":"make_validation(ls, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create validation data.frame — make_validation","text":"ls validation list ... magic dots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create validation data.frame — make_validation","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create validation data.frame — make_validation","text":"","code":"i18n <- shiny.i18n::Translator$new(translation_csvs_path = here::here(\"inst/translations\")) #> Warning: You didn't specify config translation yaml file. Default settings are used. i18n$set_translation_language(\"en\") df_original <- mtcars df_original[1, 2:4] <- NA df_obs <- df_original |> dplyr::filter(carb == 4) df_vars <- df_original[1:7] val <- purrr::map2(   .x = validation_lib(),   .y = list(     list(x = df_original, y = df_obs),     list(x = df_original, y = df_vars),     list(x = df_original)   ),   make_validation ) #> Error in validation_lib(): could not find function \"validation_lib\" val |> make_validation_alerts() #> Error: object 'val' not found  val2 <- purrr::map2(   .x = validation_lib()[2],   .y = list(list(x = mtcars, y = mtcars[0])),   make_validation ) #> Error in validation_lib(): could not find function \"validation_lib\" val2 |> make_validation_alerts() #> Error: object 'val2' not found  val3 <- make_validation(   ls = validation_lib()[[2]],   list(x = mtcars, y = mtcars[0]) ) #> Error in validation_lib(): could not find function \"validation_lib\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.html","id":null,"dir":"Reference","previous_headings":"","what":"Create alert from validation data.frame — make_validation_alerts","title":"Create alert from validation data.frame — make_validation_alerts","text":"Create alert validation data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create alert from validation data.frame — make_validation_alerts","text":"","code":"make_validation_alerts(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create alert from validation data.frame — make_validation_alerts","text":"data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"MCAR validation based on a gtsummary table bady — mcar_validate","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"MCAR validation based gtsummary table bady","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"","code":"mcar_validate(data, outcome = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"data data outcome outcome variable","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"MCAR validation based on a gtsummary table bady — mcar_validate","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":null,"dir":"Reference","previous_headings":"","what":"Merge list of expressions — merge_expression","title":"Merge list of expressions — merge_expression","text":"Merge list expressions","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merge list of expressions — merge_expression","text":"","code":"merge_expression(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merge list of expressions — merge_expression","text":"data list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merge list of expressions — merge_expression","text":"expression","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_expression.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Merge list of expressions — merge_expression","text":"","code":"list(   rlang::call2(.fn = \"select\", !!!list(c(\"cyl\", \"disp\")), .ns = \"dplyr\"),   rlang::call2(.fn = \"default_parsing\", .ns = \"FreesearchR\") ) |> merge_expression() #> dplyr::select(c(\"cyl\", \"disp\")) %>% FreesearchR::default_parsing()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"Wrapper pivot gtsummary table data long plotting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"","code":"merge_long(list, model.names)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list custom regression models list model.names names models include","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/merge_long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":null,"dir":"Reference","previous_headings":"","what":"Get missingsness fraction — missing_fraction","title":"Get missingsness fraction — missing_fraction","text":"Get missingsness fraction","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get missingsness fraction — missing_fraction","text":"","code":"missing_fraction(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get missingsness fraction — missing_fraction","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get missingsness fraction — missing_fraction","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get missingsness fraction — missing_fraction","text":"","code":"c(NA, 1:10, rep(NA, 3)) |> missing_fraction() #> [1] 0.2857143"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":null,"dir":"Reference","previous_headings":"","what":"Converting all variables to logicals by missing status — missings_logic_across","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"Converting variables logicals missing status","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"","code":"missings_logic_across(data, exclude = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"data data exclude character vector variable names excluded","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"data frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converting all variables to logicals by missing status — missings_logic_across","text":"","code":"mtcars |> missings_logic_across(\"cyl\") #> # A tibble: 32 × 11 #>    mpg     cyl disp  hp    drat  wt    qsec  vs    am    gear  carb  #>    <lgl> <dbl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> <lgl> #>  1 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  2 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  3 FALSE     4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  4 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  5 FALSE     8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  6 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  7 FALSE     8 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  8 FALSE     4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #>  9 FALSE     4 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #> 10 FALSE     6 FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE #> # ℹ 22 more rows ## gtsummary::trial |> ##   missings_logic_across() |> ##   gtsummary::tbl_summary()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate function of missingness in data — missings_validate","title":"Validate function of missingness in data — missings_validate","text":"Validate function missingness data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate function of missingness in data — missings_validate","text":"","code":"missings_validate(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate function of missingness in data — missings_validate","text":"data data set","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate function of missingness in data — missings_validate","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/missings_validate.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validate function of missingness in data — missings_validate","text":"","code":"df <- mtcars df[1, 2:4] <- NA missings_validate(df) #>   p_miss #> 1   0.85"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to modify quarto file to render specific formats — modify_qmd","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"Wrapper modify quarto file render specific formats","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"","code":"modify_qmd(file, format)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"file filename format desired output","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"none","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":null,"dir":"Reference","previous_headings":"","what":"Set values as names and names as values — names2val","title":"Set values as names and names as values — names2val","text":"Set values names names values","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Set values as names and names as values — names2val","text":"","code":"names2val(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Set values as names and names as values — names2val","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Set values as names and names as values — names2val","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/names2val.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Set values as names and names as values — names2val","text":"","code":"names2val(c(\"Cylinders\" = \"cyl\", \"Transmission\" = \"am\", \"Gears\" = \"gear\")) #>            cyl             am           gear  #>    \"Cylinders\" \"Transmission\"        \"Gears\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Observations filter test wrapper — obs_filter_validate","title":"Observations filter test wrapper — obs_filter_validate","text":"Observations filter test wrapper","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Observations filter test wrapper — obs_filter_validate","text":"","code":"obs_filter_validate(before, after)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Observations filter test wrapper — obs_filter_validate","text":"data data ","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Observations filter test wrapper — obs_filter_validate","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a data overview data.frame ready for sparklines — overview_vars","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"Create data overview data.frame ready sparklines","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"overview_vars(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/overview_vars.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"mtcars |> overview_vars() #> # A tibble: 11 × 7 #>    icon    class   name  n_missing p_complete n_unique vals         #>    <chr>   <chr>   <chr>     <dbl>      <dbl>    <int> <named list> #>  1 numeric numeric mpg           0          1       25 <dbl [32]>   #>  2 numeric numeric cyl           0          1        3 <dbl [32]>   #>  3 numeric numeric disp          0          1       27 <dbl [32]>   #>  4 numeric numeric hp            0          1       22 <dbl [32]>   #>  5 numeric numeric drat          0          1       22 <dbl [32]>   #>  6 numeric numeric wt            0          1       29 <dbl [32]>   #>  7 numeric numeric qsec          0          1       30 <dbl [32]>   #>  8 numeric numeric vs            0          1        2 <dbl [32]>   #>  9 numeric numeric am            0          1        2 <dbl [32]>   #> 10 numeric numeric gear          0          1        3 <dbl [32]>   #> 11 numeric numeric carb          0          1        6 <dbl [32]>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":null,"dir":"Reference","previous_headings":"","what":"Reduce character vector with the native pipe operator or character string — pipe_string","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"Reduce character vector native pipe operator character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"","code":"pipe_string(data, collapse = \"|>\\n\")"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"data list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"character string","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/pipe_string.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Reduce character vector with the native pipe operator or character string — pipe_string","text":"","code":"list(   \"mtcars\",   rlang::call2(.fn = \"select\", !!!list(c(\"cyl\", \"disp\")), .ns = \"dplyr\"),   rlang::call2(.fn = \"default_parsing\", .ns = \"FreesearchR\") ) |>   lapply(expression_string) |>   pipe_string() |>   expression_string(\"data<-\") #> [1] \"data<-mtcars|>\\ndplyr::select(c('cyl', 'disp'))|>\\nFreesearchR::default_parsing()\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":null,"dir":"Reference","previous_headings":"","what":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"Regression coef plot gtsummary. Slightly modified pass arguments","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"# S3 method for class 'tbl_regression' plot(   x,   plot_ref = TRUE,   remove_header_rows = TRUE,   remove_reference_rows = FALSE,   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"x (tbl_regression, tbl_uvregression) 'tbl_regression' 'tbl_uvregression' object plot_ref (scalar logical) plot reference values remove_header_rows (scalar logical) logical indicating whether remove header rows categorical variables. Default TRUE remove_reference_rows (scalar logical) logical indicating whether remove reference rows categorical variables. Default FALSE. ... arguments passed ggstats::ggcoef_plot(...)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"if (FALSE) { # \\dontrun{ mod <- lm(mpg ~ ., default_parsing(mtcars)) p <- mod |>   gtsummary::tbl_regression() |>   plot(colour = \"variable\") } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot euler diagrams — plot_euler","title":"Easily plot euler diagrams — plot_euler","text":"Easily plot euler diagrams","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot euler diagrams — plot_euler","text":"","code":"plot_euler(data, pri, sec, ter = NULL, seed = 2103)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily plot euler diagrams — plot_euler","text":"data data seed seed x name main variable y name secondary variables z grouping variable","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot euler diagrams — plot_euler","text":"patchwork object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot euler diagrams — plot_euler","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler(\"A\", c(\"B\", \"C\"), \"D\", seed = 4) #> Error in plot_euler(data.frame(A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),     B = sample(c(\"A\", \"C\"), 50, TRUE), C = sample(c(TRUE, FALSE,         FALSE, FALSE), 50, TRUE), D = sample(c(TRUE, FALSE, FALSE,         FALSE), 50, TRUE)), \"A\", c(\"B\", \"C\"), \"D\", seed = 4): object 'i18n' not found mtcars |> plot_euler(\"vs\", \"am\", seed = 1)  mtcars |> plot_euler(\"vs\", \"am\", \"cyl\", seed = 1) #> Error in plot_euler(mtcars, \"vs\", \"am\", \"cyl\", seed = 1): object 'i18n' not found stRoke::trial |>   dplyr::mutate(     mfi_cut = cut(mfi_6, c(0, 12, max(mfi_6, na.rm = TRUE))),     mdi_cut = cut(mdi_6, c(0, 20, max(mdi_6, na.rm = TRUE)))   ) |>   purrr::map2(     c(sapply(stRoke::trial, \\(.x)REDCapCAST::get_attr(.x, attr = \"label\")), \"Fatigue\", \"Depression\"),     \\(.x, .y){       REDCapCAST::set_attr(.x, .y, \"label\")     }   ) |>   dplyr::bind_cols() |>   plot_euler(\"mfi_cut\", \"mdi_cut\")  stRoke::trial |>   plot_euler(pri=\"male\", sec=c(\"hypertension\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot single euler diagrams — plot_euler_single","title":"Easily plot single euler diagrams — plot_euler_single","text":"Easily plot single euler diagrams","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"plot_euler_single(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot single euler diagrams — plot_euler_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler_single()  mtcars[c(\"vs\", \"am\")] |> plot_euler_single()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Beautiful sankey plot — plot_sankey_single","title":"Beautiful sankey plot — plot_sankey_single","text":"Beautiful sankey plot","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"plot_sankey_single(   data,   pri,   sec,   color.group = c(\"pri\", \"sec\"),   colors = NULL,   missing.level = \"Missing\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Beautiful sankey plot — plot_sankey_single","text":"color.group set group colour . \"x\" \"y\". colors optinally specify colors. Give NA color, color level primary group color level secondary group. ... passed sankey_ready()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Beautiful sankey plot — plot_sankey_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey_single(\"first\", \"last\")  ds |> plot_sankey_single(\"first\", \"last\", color.group = \"sec\")  data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   plot_sankey_single(\"first\", \"last\", color.group = \"pri\")  mtcars |>   default_parsing() |>   plot_sankey_single(\"cyl\", \"vs\", color.group = \"pri\")  stRoke::trial |>   default_parsing() |>   plot_sankey_single(\"diabetes\", \"hypertension\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes."},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_functions","title":"Get possible regression models — possible_functions","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_functions","text":"","code":"possible_functions(data, design = c(\"cross-sectional\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_functions","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_functions","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_functions","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\"  mtcars |>   default_parsing() |>   dplyr::select(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_plots","title":"Get possible regression models — possible_plots","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_plots","text":"","code":"possible_plots(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_plots","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_plots","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/possible_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_plots","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_plots() #> Error in supported_plots(): object 'i18n' not found  mtcars |>   default_parsing() |>   dplyr::select(\"mpg\") |>   possible_plots() #> Error in supported_plots(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Flexible file import based on extension — read_input","title":"Flexible file import based on extension — read_input","text":"Flexible file import based extension","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(file, consider.na = c(\"NA\", \"\\\"\\\"\", \"\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Flexible file import based on extension — read_input","text":"file file name consider.na character vector strings consider NAs","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Flexible file import based on extension — read_input","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/read_input.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(\"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv\") #> Rows: 28 Columns: 8 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: \",\" #> dbl (8): id, ab, age, imm, vis, ver, att, del #>  #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 28 × 8 #>       id    ab   age   imm   vis   ver   att   del #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1     1     1    74    38    35    30    29    35 #>  2     1     2    69    36    36    21    27    37 #>  3     2     1    63    32    31    26    34    38 #>  4     2     2    64    37    34    26    36    46 #>  5     3     1    69    39    33    31    47    29 #>  6     3     2    70    40    36    31    46    25 #>  7     4     1    79    44    37    20    37    36 #>  8     4     2    81    35    36    31    37    40 #>  9     5     1    77    35    26    17    20    36 #> 10     5     2    80    29    34    18    23    36 #> # ℹ 18 more rows"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Shiny module to browser and export REDCap data — m_redcap_readUI","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"Shiny module browser export REDCap data Test app redcap_read_shiny_module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"m_redcap_readUI(id, title = TRUE, url = NULL)  m_redcap_readServer(id)  redcap_demo_app()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"id Namespace id include_title logical include title","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"shiny ui element shiny server module","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"if (FALSE) { # \\dontrun{ redcap_demo_app() } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a regression model programatically — regression_model","title":"Create a regression model programatically — regression_model","text":"Output concatenated list model information model","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a regression model programatically — regression_model","text":"","code":"regression_model(   data,   outcome.str = NULL,   auto.mode = FALSE,   formula.str = NULL,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_uv(   data,   outcome.str,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )  regression_model_uv_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a regression model programatically — regression_model","text":"data data outcome.str name outcome variable auto.mode Make assumptions function dependent outcome data format. Overwrites arguments. formula.str custom formula glue string. Default NULL. args.list custom character string converted using argsstring2list() list arguments. Default NULL. fun name custom function. Default NULL. vars character vector variables include ... ignored fun.descr Description chosen function matching description \"supported_functions()\"","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a regression model programatically — regression_model","text":"object standard class fun object standard class fun list list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_model.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a regression model programatically — regression_model","text":"","code":"gtsummary::trial |>   regression_model(outcome.str = \"age\") #> Error in str2lang(x): <text>:2:0: unexpected end of input #> 1: age~ #>    ^ gtsummary::trial |>   regression_model(     outcome.str = \"age\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) #>  #> Call: #> (function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> })(formula = age ~ ., data = structure(list(trt = structure(c(1L,  #> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L,  #> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L,  #> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L,  #> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L,  #> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L,  #> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L,  #> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L,  #> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\", \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(0L,  #>     1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L,  #>     0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L,  #>     0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L,  #>     0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L,  #>     1L, 1L, 0L, 0L), label = \"Tumor Response\"), death = structure(c(0L,  #>     0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L,  #>     0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L,  #>     1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L,  #>     1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L,  #>     1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L,  #>     0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 1L, 0L), label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)    trtDrug B       marker      stageT2      stageT3      stageT4   #>     45.9247      -0.4052      -0.1435       2.0519       2.4437      -3.1573   #>     gradeII     gradeIII     response        death      ttdeath   #>      0.1750       1.6855       4.9885       3.0775      -0.1394   #>  gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     auto.mode = FALSE,     fun = \"stats::glm\",     args.list = list(family = binomial(link = \"logit\"))   ) #> Error in str2lang(x): <text>:2:0: unexpected end of input #> 1: trt~ #>    ^ m <- mtcars |>   default_parsing() |>   regression_model(     outcome.str = \"mpg\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~{paste(vars,collapse='+')}\",     args.list = NULL,     vars = c(\"mpg\", \"cyl\")   ) #> Warning: the response appeared on the right-hand side and was dropped #> Warning: problem with term 1 in model.matrix: no columns are assigned broom::tidy(m) #> # A tibble: 3 × 5 #>   term        estimate std.error statistic  p.value #>   <chr>          <dbl>     <dbl>     <dbl>    <dbl> #> 1 (Intercept)    26.7      0.972     27.4  2.69e-22 #> 2 cyl6           -6.92     1.56      -4.44 1.19e- 4 #> 3 cyl8          -11.6      1.30      -8.90 8.57e-10 if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model_uv(outcome.str = \"age\") gtsummary::trial |>   regression_model_uv(     outcome.str = \"age\",     fun = \"stats::lm\",     args.list = NULL   ) m <- gtsummary::trial |> regression_model_uv(   outcome.str = \"trt\",   fun = \"stats::glm\",   args.list = list(family = stats::binomial(link = \"logit\")) ) lapply(m, broom::tidy) |> dplyr::bind_rows() } # } if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model(     outcome.str = \"age\",     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) ls <- regression_model_list(data = default_parsing(mtcars), outcome.str = \"cyl\", fun.descr = \"Ordinal logistic regression model\") summary(ls$model) ls <- regression_model_list(data = default_parsing(mtcars), outcome.str = \"mpg\", fun.descr = \"Linear regression model\")  ls <- regression_model_list(data = default_parsing(gtsummary::trial), outcome.str = \"trt\", fun.descr = \"Logistic regression model\") tbl <- gtsummary::tbl_regression(ls$model, exponentiate = TRUE) m <- gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     fun = \"stats::glm\",     formula.str = \"{outcome.str}~.\",     args.list = list(family = \"binomial\")   ) tbl2 <- gtsummary::tbl_regression(m, exponentiate = TRUE) broom::tidy(ls$model) broom::tidy(m) } # } if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model_uv(     outcome.str = \"trt\",     fun = \"stats::glm\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) |>   lapply(broom::tidy) |>   dplyr::bind_rows() ms <- regression_model_uv_list(data = default_parsing(mtcars), outcome.str = \"mpg\", fun.descr = \"Linear regression model\") ms$code ls <- regression_model_uv_list(data = default_parsing(mtcars), outcome.str = \"am\", fun.descr = \"Logistic regression model\") ls$code lapply(ms$model, broom::tidy) |> dplyr::bind_rows() } # }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Create table of regression model — regression_table","title":"Create table of regression model — regression_table","text":"Create table regression model","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create table of regression model — regression_table","text":"","code":"regression_table(x, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create table of regression model — regression_table","text":"x regression model ... passed methods args.list list arguments passed 'fun'. fun function use table creation. Default \"gtsummary::tbl_regression\".","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create table of regression model — regression_table","text":"object standard class fun","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":null,"dir":"Reference","previous_headings":"","what":"Create regression summary table — regression_table_create","title":"Create regression summary table — regression_table_create","text":"Create regression summary table","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create regression summary table — regression_table_create","text":"","code":"regression_table_create(   x,   ...,   args.list = NULL,   fun = \"gtsummary::tbl_regression\",   theme = c(\"jama\", \"lancet\", \"nejm\", \"qjecon\") )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create regression summary table — regression_table_create","text":"x (list ) regression model ... ignored now args.list args.list summary function fun table summary function. Default \"gtsummary::tbl_regression\" theme summary table theme","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create regression summary table — regression_table_create","text":"gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Remove empty/NA attributes — remove_empty_attr","title":"Remove empty/NA attributes — remove_empty_attr","text":"Remove empty/NA attributes","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Remove empty/NA attributes — remove_empty_attr","text":"","code":"remove_empty_attr(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Remove empty/NA attributes — remove_empty_attr","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Remove empty/NA attributes — remove_empty_attr","text":"data class input","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Remove empty/NA attributes — remove_empty_attr","text":"","code":"ds <- mtcars |>   lapply(\\(.x) REDCapCAST::set_attr(.x, label = NA, attr = \"label\")) |>   dplyr::bind_cols() ds |>   remove_empty_attr() |>   str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : num [1:32] 0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num [1:32] 1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ... mtcars |>   lapply(\\(.x) REDCapCAST::set_attr(.x, label = NA, attr = \"label\")) |>   remove_empty_attr() |>   str() #> List of 11 #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : num [1:32] 0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num [1:32] 1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":null,"dir":"Reference","previous_headings":"","what":"Removes columns with completenes below cutoff — remove_empty_cols","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"Removes columns completenes cutoff","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"remove_empty_cols(data, cutoff = 0.7)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data data frame cutoff numeric","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"data.frame(a = 1:10, b = NA, c = c(2, NA)) |> remove_empty_cols(cutoff = .5) #>     a  c #> 1   1  2 #> 2   2 NA #> 3   3  2 #> 4   4 NA #> 5   5  2 #> 6   6 NA #> 7   7  2 #> 8   8 NA #> 9   9  2 #> 10 10 NA"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"simple function remove nested lists, like uploading .rds","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"","code":"remove_nested_list(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"data data","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Very simple function to remove nested lists, like when uploading .rds — remove_nested_list","text":"","code":"dplyr::tibble(a = 1:10, b = rep(list(\"a\"), 10)) |> remove_nested_list() #> # A tibble: 10 × 1 #>        a #>    <int> #>  1     1 #>  2     2 #>  3     3 #>  4     4 #>  5     5 #>  6     6 #>  7     7 #>  8     8 #>  9     9 #> 10    10 dplyr::tibble(a = 1:10, b = rep(list(c(\"a\", \"b\")), 10)) |> as.data.frame() #>     a    b #> 1   1 a, b #> 2   2 a, b #> 3   3 a, b #> 4   4 a, b #> 5   5 a, b #> 6   6 a, b #> 7   7 a, b #> 8   8 a, b #> 9   9 a, b #> 10 10 a, b"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":null,"dir":"Reference","previous_headings":"","what":"Get names of repeated instruments — repeated_instruments","title":"Get names of repeated instruments — repeated_instruments","text":"Get names repeated instruments","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get names of repeated instruments — repeated_instruments","text":"","code":"repeated_instruments(uri, token)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get names of repeated instruments — repeated_instruments","text":"uri REDCap database uri token database token","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get names of repeated instruments — repeated_instruments","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a select input control with icon(s) — selectInputIcon","title":"Create a select input control with icon(s) — selectInputIcon","text":"Extend form controls adding text icons , , sides classic selectInput.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a select input control with icon(s) — selectInputIcon","text":"","code":"selectInputIcon(   inputId,   label,   choices,   selected = NULL,   multiple = FALSE,   selectize = TRUE,   size = NULL,   width = NULL,   icon = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a select input control with icon(s) — selectInputIcon","text":"inputId input slot used access value. label Display label control, NULL label. choices List values select . elements list named, name — rather value — displayed user. also possible group related inputs providing named list whose elements (either named unnamed) lists, vectors, factors. case, outermost names used group labels (leveraging <optgroup> HTML tag) elements respective sublist. See example section small demo feature. selected initially selected value (multiple values multiple = TRUE). specified defaults first value single-select lists values multiple select lists. multiple selection multiple items allowed? selectize Whether use selectize.js . size Number items show selection box; larger number result taller box. compatible selectize=TRUE. Normally, multiple=FALSE, select input drop-list, size set, box instead. width width input, e.g. '400px', '100%'; see validateCssUnit().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a select input control with icon(s) — selectInputIcon","text":"numeric input control can added UI definition.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":null,"dir":"Reference","previous_headings":"","what":"Separate string wide or long — separate_string","title":"Separate string wide or long — separate_string","text":"Separate string wide long","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Separate string wide or long — separate_string","text":"","code":"separate_string(data, col, delim, direction = c(\"wide\", \"long\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Separate string wide or long — separate_string","text":"data data col column delim delimiter direction target direction","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/separate_string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Separate string wide or long — separate_string","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":null,"dir":"Reference","previous_headings":"","what":"(Re)label columns in data.frame — set_column_label","title":"(Re)label columns in data.frame — set_column_label","text":"(Re)label columns data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"(Re)label columns in data.frame — set_column_label","text":"","code":"set_column_label(data, label, overwrite = TRUE)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"(Re)label columns in data.frame — set_column_label","text":"data data.frame labelled label named list vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"(Re)label columns in data.frame — set_column_label","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/set_column_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"(Re)label columns in data.frame — set_column_label","text":"","code":"ls <- list(\"mpg\" = \"\", \"cyl\" = \"Cylinders\", \"disp\" = \"\", \"hp\" = \"\", \"drat\" = \"\", \"wt\" = \"\", \"qsec\" = \"\", \"vs\" = \"\", \"am\" = \"\", \"gear\" = \"\", \"carb\" = \"\") ls2 <- c(\"mpg\" = \"\", \"cyl\" = \"Cylinders\", \"disp\" = \"\", \"hp\" = \"Horses\", \"drat\" = \"\", \"wt\" = \"\", \"qsec\" = \"\", \"vs\" = \"\", \"am\" = \"\", \"gear\" = \"\", \"carb\" = \"\") ls3 <- c(\"mpg\" = \"\", \"cyl\" = \"\", \"disp\" = \"\", \"hp\" = \"Horses\", \"drat\" = \"\", \"wt\" = \"\", \"qsec\" = \"\", \"vs\" = \"\", \"am\" = \"\", \"gear\" = \"\", \"carb\" = \"\") mtcars |>   set_column_label(ls) |>   set_column_label(ls2) |>   set_column_label(ls3) #> # A tibble: 32 × 11 #>      mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1  21       6  160    110  3.9   2.62  16.5     0     1     4     4 #>  2  21       6  160    110  3.9   2.88  17.0     0     1     4     4 #>  3  22.8     4  108     93  3.85  2.32  18.6     1     1     4     1 #>  4  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1 #>  5  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2 #>  6  18.1     6  225    105  2.76  3.46  20.2     1     0     3     1 #>  7  14.3     8  360    245  3.21  3.57  15.8     0     0     3     4 #>  8  24.4     4  147.    62  3.69  3.19  20       1     0     4     2 #>  9  22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2 #> 10  19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4 #> # ℹ 22 more rows rlang::expr(FreesearchR::set_column_label(label = !!ls3)) |> expression_string() #> [1] \"FreesearchR::set_column_label(label = c(mpg = '', cyl = '', disp = '', hp = 'Horses', drat = '', wt = '', qsec = '', vs = '', am = '', gear = '', carb = ''))\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Display a table in a window — show_data","title":"Display a table in a window — show_data","text":"Display table window","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Display a table in a window — show_data","text":"","code":"show_data(   data,   title = NULL,   options = NULL,   show_classes = TRUE,   type = c(\"popup\", \"modal\", \"winbox\"),   width = \"65%\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Display a table in a window — show_data","text":"data data object (either matrix data.frame). title Title displayed window. options Arguments passed toastui::datagrid(). show_classes Show variables classes variables names table header. type Display table pop-shinyWidgets::show_alert(), modal window shiny::showModal() WinBox window shinyWidgets::WinBox(). width Width window, used type = \"popup\" type = \"winbox\". ... Additional options, wbOptions = wbOptions() wbControls = wbControls().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Display a table in a window — show_data","text":"value.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/show_data.html","id":"note","dir":"Reference","previous_headings":"","what":"Note","title":"Display a table in a window — show_data","text":"use type = \"winbox\", need use shinyWidgets::html_dependency_winbox() somewhere UI.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":null,"dir":"Reference","previous_headings":"","what":"Simplified version of the snakecase packages to_snake_case — simple_snake","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"Simplified version snakecase packages to_snake_case","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"","code":"simple_snake(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"data character string vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/simple_snake.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simplified version of the snakecase packages to_snake_case — simple_snake","text":"","code":"c(\"foo bar\", \"fooBar21\", \"!!Foo'B'a-r\", \"foo_bar\", \"F  OO bar\") |> simple_snake() #> [1] \"foo_bar\"   \"foobar21\"  \"fooba-r\"   \"foo_bar\"   \"f__oo_bar\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"Drop-replacement base::sort_by option remove NAs","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"","code":"sort_by(x, y, na.rm = FALSE, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"x x y y na.rm remove NAs ... passed base_sort_by","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/sort_by.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Drop-in replacement for the base::sort_by with option to remove NAs — sort_by","text":"","code":"sort_by(c(\"Multivariable\", \"Univariable\"), c(\"Univariable\", \"Minimal\", \"Multivariable\")) #> [1] \"Univariable\"   NA              \"Multivariable\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":null,"dir":"Reference","previous_headings":"","what":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"Specify format arguments include qmd header/frontmatter","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"","code":"specify_qmd_format(data, fileformat = c(\"docx\", \"odt\", \"pdf\", \"all\"))"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"data vector fileformat format include","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":null,"dir":"Reference","previous_headings":"","what":"String split module based on tidyr::separate_ — split-string","title":"String split module based on tidyr::separate_ — split-string","text":"String split module based tidyr::separate_","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"String split module based on tidyr::separate_ — split-string","text":"","code":"string_split_ui(id)  string_split_server(id, data_r = reactive(NULL))  modal_string_split(   id,   title = i18n$t(\"Split character string\"),   easyClose = TRUE,   size = \"xl\",   footer = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"String split module based on tidyr::separate_ — split-string","text":"id id data_r reactive data title Modal title easyClose easyClose size size footer footer","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/split-string.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"String split module based on tidyr::separate_ — split-string","text":"shiny ui module shiny module server shiny modal","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily subset by data type function — subset_types","title":"Easily subset by data type function — subset_types","text":"Easily subset data type function","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily subset by data type function — subset_types","text":"","code":"subset_types(data, types, type.fun = data_type)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily subset by data type function — subset_types","text":"data data types desired types type.fun function get type. Default outcome_type","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily subset by data type function — subset_types","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/subset_types.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily subset by data type function — subset_types","text":"","code":"default_parsing(mtcars) |> subset_types(\"ordinal\") #> # A tibble: 32 × 0 default_parsing(mtcars) |> subset_types(c(\"dichotomous\", \"categorical\")) #> # A tibble: 32 × 5 #>    cyl   vs    am    gear  carb  #>    <fct> <lgl> <lgl> <fct> <fct> #>  1 6     FALSE TRUE  4     4     #>  2 6     FALSE TRUE  4     4     #>  3 4     TRUE  TRUE  4     1     #>  4 6     TRUE  FALSE 3     1     #>  5 8     FALSE FALSE 3     2     #>  6 6     TRUE  FALSE 3     1     #>  7 8     FALSE FALSE 3     4     #>  8 4     TRUE  FALSE 4     2     #>  9 4     TRUE  FALSE 4     2     #> 10 6     TRUE  FALSE 4     4     #> # ℹ 22 more rows #' default_parsing(mtcars) |> subset_types(\"factor\",class)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_functions","title":"Implemented functions — supported_functions","text":"Library supported functions. list name \"descr\" element unique element list.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_functions","text":"","code":"supported_functions()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_functions","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_functions","text":"","code":"supported_functions() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>  #> $glm #> $glm$descr #> [1] \"Logistic regression model\" #>  #> $glm$design #> [1] \"cross-sectional\" #>  #> $glm$out.type #> [1] \"dichotomous\" #>  #> $glm$fun #> [1] \"stats::glm\" #>  #> $glm$args.list #> $glm$args.list$family #> [1] \"binomial\" #>  #>  #> $glm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $glm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $glm$table.args.list #> list() #>  #>  #> $polr #> $polr$descr #> [1] \"Ordinal logistic regression model\" #>  #> $polr$design #> [1] \"cross-sectional\" #>  #> $polr$out.type #> [1] \"categorical\" #>  #> $polr$fun #> [1] \"MASS::polr\" #>  #> $polr$args.list #> $polr$args.list$Hess #> [1] TRUE #>  #> $polr$args.list$method #> [1] \"logistic\" #>  #>  #> $polr$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $polr$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $polr$table.args.list #> list() #>  #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_plots","title":"Implemented functions — supported_plots","text":"Library supported functions. list name \"descr\" element unique element list. descr: Plot description primary.type: Primary variable data type (continuous, dichotomous ordinal) secondary.type: Secondary variable data type (continuous, dichotomous ordinal) secondary.extra: \"none\" NULL option choose none. tertiary.type: Tertiary variable data type (continuous, dichotomous ordinal)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_plots","text":"","code":"supported_plots()"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_plots","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/supported_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_plots","text":"","code":"supported_plots() |> str() #> Error in supported_plots(): object 'i18n' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":null,"dir":"Reference","previous_headings":"","what":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"Ensure symmetrical plot around 1 logarithmic x scale ratio plots","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"","code":"symmetrical_scale_x_log10(plot, breaks = c(1, 2, 3, 5, 10), ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"plot ggplot2 plot breaks breaks used mirrored ... ignored","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots — symmetrical_scale_x_log10","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":null,"dir":"Reference","previous_headings":"","what":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"substitue gtsummary::tbl_merge, use list names tab spanner names.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"","code":"tbl_merge(data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"data gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"gt summary list object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":null,"dir":"Reference","previous_headings":"","what":"Get data type icons — type_icons","title":"Get data type icons — type_icons","text":"Get data type icons","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get data type icons — type_icons","text":"","code":"type_icons(x)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get data type icons — type_icons","text":"x character vector data classes","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get data type icons — type_icons","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/type_icons.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get data type icons — type_icons","text":"","code":"\"ordinal\" |> type_icons() default_parsing(mtcars) |> sapply(data_type) |> type_icons() #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> Warning: coercing argument of type 'character' to logical #> $mpg #>  #> $cyl #>  #> $disp #>  #> $hp #>  #> $drat #>  #> $wt #>  #> $qsec #>  #> $vs #>  #> $am #>  #> $gear #>  #> $carb #>"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":null,"dir":"Reference","previous_headings":"","what":"FreesearchR UI elements list — ui_elements","title":"FreesearchR UI elements list — ui_elements","text":"FreesearchR UI elements list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"FreesearchR UI elements list — ui_elements","text":"","code":"ui_elements(selection)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"FreesearchR UI elements list — ui_elements","text":"selection specify element output","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/ui_elements.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"FreesearchR UI elements list — ui_elements","text":"Shinu UI elements","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Make unique variable names — unique_names","title":"Make unique variable names — unique_names","text":"Helper function create new variable names unique given set existing names (data set, example). variable name already exists, number appended.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Make unique variable names — unique_names","text":"","code":"unique_names(new, existing = character())"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Make unique variable names — unique_names","text":"new vector proposed new variable names existing vector existing variable names","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Make unique variable names — unique_names","text":"vector unique new variable names","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_names.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Make unique variable names — unique_names","text":"","code":"unique_names(c(\"var_x\", \"var_y\", \"var_x\"), c(\"var_x\", \"var_z\")) #> [1] \"var_x_1\" \"var_y\"   \"var_x_2\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":null,"dir":"Reference","previous_headings":"","what":"Create unique short names of character vector items based on index — unique_short","title":"Create unique short names of character vector items based on index — unique_short","text":"function prefer original names, append index long strings.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create unique short names of character vector items based on index — unique_short","text":"","code":"unique_short(data, max = 15)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create unique short names of character vector items based on index — unique_short","text":"data character vector max maximum final name length","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create unique short names of character vector items based on index — unique_short","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/unique_short.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create unique short names of character vector items based on index — unique_short","text":"","code":"c(\"kahdleidnsallskdj\", \"hej\") |> unique_short() #> [1] \"kahdleidnsall_1\" \"hej\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Reorder the Levels of a Factor Variable — update-factor","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"module contain interface reorder levels factor variable.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"","code":"update_factor_ui(id)  update_factor_server(id, data_r = reactive(NULL))  modal_update_factor(   id,   title = i18n$t(\"Update levels of a factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_update_factor(   id,   title = i18n$t(\"Update levels of a factor\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-factor.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":null,"dir":"Reference","previous_headings":"","what":"Select, rename and convert variables — update-variables","title":"Select, rename and convert variables — update-variables","text":"Select, rename convert variables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Select, rename and convert variables — update-variables","text":"","code":"update_variables_ui(id, title = \"\")  update_variables_server(   id,   data,   height = NULL,   return_data_on_init = FALSE,   try_silent = FALSE )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Select, rename and convert variables — update-variables","text":"id Module's ID title Module's title, TRUE use default title, use NULL title shiny.tag custom one. data data.frame reactive function returning data.frame. height Height table. return_data_on_init Return initial data module called. try_silent logical: report error messages suppressed?","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update-variables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Select, rename and convert variables — update-variables","text":"shiny::reactive() function returning updated data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":null,"dir":"Reference","previous_headings":"","what":"Modified from the datamods pacakge — update_variables_datagrid","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"Modified datamods pacakge","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"update_variables_datagrid(   data,   height = NULL,   selectionId = NULL,   buttonId = NULL )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"data data height height selectionId selectionId buttonId buttonId","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"mtcars |>   summary_vars() |>   update_variables_datagrid() #> Error in update_variables_datagrid(summary_vars(mtcars)): could not find function \"update_variables_datagrid\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":null,"dir":"Reference","previous_headings":"","what":"Validation module — validation_ui","title":"Validation module — validation_ui","text":"Check dataset respect validation expectations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validation module — validation_ui","text":"","code":"validation_ui(id, max_height = NULL, ...)  validation_server(id, data)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validation module — validation_ui","text":"id Module's ID. max_height Maximum height validation results element, useful many rules. ... Arguments passed actionButton uiOutput depending display mode, use inputId/outputId, label icon (button ). data reactive function returning data.frame.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validation module — validation_ui","text":"UI: HTML tags can included shiny's UI Server: list two slots: status: reactive function returning best status available \"OK\", \"Failed\" \"Error\". details: reactive function returning list validation details.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validation module — validation_ui","text":"","code":"#' Data and analyses validation demo #' #' @returns #' @export #' #' @examples #' \\dontrun{ #' validation_demo_app() #' } validation_demo_app <- function() {   ui <- shiny::fluidPage(     shiny::tags$h2(\"Validation\"),     IDEAFilter::IDEAFilter_ui(\"data_filter\"),     shiny::br(),     DT::DTOutput(\"data_final\"),     shiny::br(),     validation_ui(\"validation_demo_2\")   )    server <- function(input, output, session) {     rv <- shiny::reactiveValues(       data_original = shiny::reactive(mtcars),       data_filtered = NULL     )      rv_validation <- shiny::reactiveValues(       obs_filter = NULL,       vars_filter = NULL     )      data_filter <- IDEAFilter::IDEAFilter(       id = \"data_filter\",       data = mtcars,       verbose = TRUE     )      shiny::observeEvent(       data_filter(),       {         rv$data_filtered <- data_filter()       }     )      output$data_final <- DT::renderDT(       data_filter()     )      shiny::observeEvent(       list(         data_filter()       ),       {         to_make_validation <- data_filter()         ## Validation         if (!is.null(to_make_validation)) {           validation <-             make_validation(               ls = validation_lib(\"obs_filter\"),               list(                 x = mtcars,                 y = to_make_validation               )             )          rv_validation$vars_filter <- validation          validation_server(id = \"validation_demo_2\", data = rv_validation$vars_filter)          }         }     )      # shiny::observeEvent(     #   list(     #     shiny::reactive(rv_validation$vars_filter)(),     #     data_filter()     #   ),     #   {     #     # browser()     #     # to_make_alert <- shiny::isolate(rv_validation$vars_filter)     #     to_make_alert <- shiny::reactive(rv_validation$vars_filter)()     #     if (!is.null(rv_validation$vars_filter)) {     #       validation_server(id = \"validation_demo_2\", data = to_make_alert)     #     }     #   }     # )   }   shiny::shinyApp(ui, server) }   #' Title #' #' @returns #' @export #' #' @examples #' validation_nr_demo_app() validation_nr_demo_app <- function() {   ui <- shiny::fluidPage(     shiny::tags$h2(\"Validation\"),     shiny::br(),     validation_ui(\"validation_demo_1\", max_height = \"30px\"),     shiny::br(),     validation_ui(\"validation_demo_2\")   )    server <- function(input, output, session) {     df_original <- mtcars      df_obs <- mtcars |> dplyr::filter(mpg > 20)      df_vars <- df_obs[1:6]      val1 <- purrr::map2(       .x = validation_lib()[1],       .y = list(list(x = df_original, y = df_obs)),       make_validation     )      val2 <- make_validation(       ls = validation_lib()[[2]],       list(x = df_original, y = df_vars)     )      validation_server(id = \"validation_demo_1\", data = val1)      validation_server(id = \"validation_demo_2\", data = val2)   }   shiny::shinyApp(ui, server) }"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":null,"dir":"Reference","previous_headings":"","what":"Validation library — validation_lib","title":"Validation library — validation_lib","text":"Validation library","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validation library — validation_lib","text":"","code":"validation_lib(name = NULL)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validation library — validation_lib","text":"name Index name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validation library — validation_lib","text":"list","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/validation_lib.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validation library — validation_lib","text":"","code":"validation_lib() #> Error in validation_lib(): could not find function \"validation_lib\" validation_lib(\"missings\") #> Error in validation_lib(\"missings\"): could not find function \"validation_lib\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":null,"dir":"Reference","previous_headings":"","what":"Variable filter test wrapper — vars_filter_validate","title":"Variable filter test wrapper — vars_filter_validate","text":"Variable filter test wrapper","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Variable filter test wrapper — vars_filter_validate","text":"","code":"vars_filter_validate(before, after)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Variable filter test wrapper — vars_filter_validate","text":"data data ","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Variable filter test wrapper — vars_filter_validate","text":"vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Variable filter test wrapper — vars_filter_validate","text":"","code":"vars_filter_validate(mtcars, mtcars[1:6]) #> Error in vars_filter_validate(mtcars, mtcars[1:6]): could not find function \"vars_filter_validate\" vars_filter_validate(mtcars, mtcars[0]) #> Error in vars_filter_validate(mtcars, mtcars[0]): could not find function \"vars_filter_validate\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":null,"dir":"Reference","previous_headings":"","what":"A selectizeInput customized for named vectors — vectorSelectInput","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput customized named vectors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"vectorSelectInput(   inputId,   label,   choices,   selected = \"\",   ...,   placeholder = \"\",   onInitialize )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"inputId passed selectizeInput label passed selectizeInput choices named vector fields populated selected default selection ... passed selectizeInput placeholder passed selectizeInput options onInitialize passed selectizeInput options","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput dropdown element","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"if (shiny::interactive()) {   shinyApp(     ui = fluidPage(       shiny::uiOutput(\"select\"),       tableOutput(\"data\")     ),     server = function(input, output) {       output$select <- shiny::renderUI({         vectorSelectInput(           inputId = \"variable\", label = \"Variable:\",           data = c(             \"Cylinders\" = \"cyl\",             \"Transmission\" = \"am\",             \"Gears\" = \"gear\"           )         )       })        output$data <- renderTable(         {           mtcars[, c(\"mpg\", input$variable), drop = FALSE]         },         rownames = TRUE       )     }   ) } #> Error: 'interactive' is not an exported object from 'namespace:shiny'"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":null,"dir":"Reference","previous_headings":"","what":"Vertical stacked bar plot wrapper — vertical_stacked_bars","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"Vertical stacked bar plot wrapper","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"","code":"vertical_stacked_bars(   data,   score = \"full_score\",   group = \"pase_0_q\",   strata = NULL,   t.size = 10,   l.color = \"black\",   l.size = 0.5,   draw.lines = TRUE,   label.str = \"{n}\\n{round(100 * p,0)}%\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"data data.frame score outcome variable group grouping variable strata stratifying variable t.size text size","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — visual-summary","title":"Data correlations evaluation module — visual-summary","text":"Data correlations evaluation module Visual summary server Visual summary modal Plot missings class apexcharter. use FreesearchR. Ggplot2 data summary visualisation based visdat::vis_dat.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — visual-summary","text":"","code":"visual_summary_ui(id)  visual_summary_server(id, data_r = shiny::reactive(NULL), ...)  modal_visual_summary(   id,   title = \"Visual overview of data classes and missing observations\",   easyClose = TRUE,   size = \"xl\",   footer = NULL,   ... )  missings_apex_plot(data, animation = FALSE, ...)  visual_summary(data, legend.title = NULL, ylab = \"Observations\", ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — visual-summary","text":"id id data_r reactive data ... optional arguments passed data_summary_gather() title title easyClose easyClose size modal size footer modal footer data data legend.title Legend title ylab Y axis label","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/visual-summary.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — visual-summary","text":"Shiny ui module shiny server shiny modal apexcharter::apexchart() htmlwidget object. ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":null,"dir":"Reference","previous_headings":"","what":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"function requires assumes systematic naming variables. now supports one level pivoting. Adding levels require added \"ignore\" string pattern similarly. Example 2.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"wide2long(   data,   pattern,   type = c(\"prefix\", \"infix\", \"suffix\"),   id.col = 1,   instance.name = \"instance\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data data pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\". id.col ID column. fill ID . Column name numeric index. Default \"1\", first column. instance.name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wide2long.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_1\", \"height_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight height #> 1   1  77        0     84     NA #> 2   1  NA        1     85    170 #> 3   2  75        0     95     NA #> 4   2  NA        1     98    193 #> 5   3  74        0     87     NA #> 6   3  NA        1     92    196 #> 7   4  73        0     77     NA #> 8   4  NA        1     71    188 #> 9   5  74        0     70     NA #> 10  5  NA        1     73    186 #> 11  6  78        0     72     NA #> 12  6  NA        1     76    191 #> 13  7  77        0     89     NA #> 14  7  NA        1     87    179 #> 15  8  73        0     84     NA #> 16  8  NA        1     84    178 #> 17  9  78        0     73     NA #> 18  9  NA        1     89    172 #> 19 10  77        0     72     NA #> 20 10  NA        1     98    193 #> 21 11  77        0     81     NA #> 22 11  NA        1    100    198 #> 23 12  76        0     76     NA #> 24 12  NA        1     83    191 #> 25 13  80        0     74     NA #> 26 13  NA        1     81    181 #> 27 14  78        0     92     NA #> 28 14  NA        1     88    175 #> 29 15  79        0     87     NA #> 30 15  NA        1     70    182 #> 31 16  77        0     77     NA #> 32 16  NA        1     87    184 #> 33 17  73        0     90     NA #> 34 17  NA        1     85    170 #> 35 18  70        0     71     NA #> 36 18  NA        1     79    183 #> 37 19  75        0     91     NA #> 38 19  NA        1     87    177 #> 39 20  74        0     96     NA #> 40 20  NA        1     75    189 data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_a_1\", \"height_b_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight weight_a height_b #> 1   1  71        0     97       NA       NA #> 2   1  NA        1     NA       71      178 #> 3   2  72        0     96       NA       NA #> 4   2  NA        1     NA       73      181 #> 5   3  80        0     83       NA       NA #> 6   3  NA        1     NA       99      182 #> 7   4  75        0     81       NA       NA #> 8   4  NA        1     NA       85      193 #> 9   5  73        0     80       NA       NA #> 10  5  NA        1     NA       97      176 #> 11  6  71        0     91       NA       NA #> 12  6  NA        1     NA       83      181 #> 13  7  70        0     79       NA       NA #> 14  7  NA        1     NA       71      197 #> 15  8  71        0     98       NA       NA #> 16  8  NA        1     NA       83      197 #> 17  9  73        0     96       NA       NA #> 18  9  NA        1     NA       82      171 #> 19 10  70        0     89       NA       NA #> 20 10  NA        1     NA       75      194 #> 21 11  74        0     88       NA       NA #> 22 11  NA        1     NA       93      192 #> 23 12  73        0     87       NA       NA #> 24 12  NA        1     NA       84      194 #> 25 13  76        0     90       NA       NA #> 26 13  NA        1     NA       90      174 #> 27 14  73        0     77       NA       NA #> 28 14  NA        1     NA       74      198 #> 29 15  71        0     99       NA       NA #> 30 15  NA        1     NA       76      172 #> 31 16  73        0    100       NA       NA #> 32 16  NA        1     NA       86      179 #> 33 17  78        0     72       NA       NA #> 34 17  NA        1     NA       81      182 #> 35 18  71        0     90       NA       NA #> 36 18  NA        1     NA       86      179 #> 37 19  73        0     91       NA       NA #> 38 19  NA        1     NA       83      196 #> 39 20  73        0     71       NA       NA #> 40 20  NA        1     NA       80      172 # Optional filling of missing values by last observation carried forward # Needed for mmrm analyses long_missings |>   # Fills record ID assuming none are missing   tidyr::fill(record_id) |>   # Grouping by ID for the last step   dplyr::group_by(record_id) |>   # Filling missing data by ID   tidyr::fill(names(long_missings)[!names(long_missings) %in% new_names]) |>   # Remove grouping   dplyr::ungroup() #> Error: object 'long_missings' not found"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapping — wrap_plot_list","title":"Wrapping — wrap_plot_list","text":"Wrapping","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapping — wrap_plot_list","text":"","code":"wrap_plot_list(   data,   tag_levels = NULL,   title = NULL,   axis.font.family = NULL,   guides = \"collect\",   axes = \"collect\",   axis_titles = \"collect\",   ... )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapping — wrap_plot_list","text":"data list ggplot2 objects tag_levels passed patchwork::plot_annotation given. Default NULL title panel title guides passed patchwork::wrap_plots() axes passed patchwork::wrap_plots() axis_titles passed patchwork::wrap_plots() ... passed patchwork::wrap_plots()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapping — wrap_plot_list","text":"list ggplot2 objects","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"Wrapper save data RDS, load specified qmd render","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"","code":"write_quarto(data, ...)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"data list pass qmd ... Passed quarto::quarto_render()","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/write_quarto.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"output file name","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25123","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.3","title":"FreesearchR 25.12.3","text":"NEW Extended missingness evaluation include two different approaches. Docs catch video tutorials coming.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25122","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.2","title":"FreesearchR 25.12.2","text":"FIX Fixed hanging interface splitting strings. NEW New option shorten character variables first N words characters. Shortening characters useful working eg. ICD-10 diagnostic codes.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25121","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.12.1","title":"FreesearchR 25.12.1","text":"NEW Option edit factor label names “New factor” pop-. allows easier naming tables, also combine levels. new variable appended dataset label names changed. Code now also exported. FIX Fixes bug, white space code exported removed. Now little many spaces included. Fine tuning continues. NEW Easily copy code just clicking “copy” code blocks.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25112","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.11.2","title":"FreesearchR 25.11.2","text":"NEW Vignettes moved FreesearchR project knowledge base. mainly ease rendering allow quick easy updates well future translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25111","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.11.1","title":"FreesearchR 25.11.1","text":"NEW Added option select extensive baseline table selecting “Minimal” (current) “Extensive” adds mean/sd min/max well plots levels also dichotomous variables.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25105","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.5","title":"FreesearchR 25.10.5","text":"NEW New character/text split function available. selection delimiters recognised selectable. Function available splittable variables present. NEW Distribution plotting factors much improved including two new bar plot styles removing options better suited continuous data. last major functions implemented workshops Jitimai Zanzibar City, Zanzibar October 2025.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25104","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.4","title":"FreesearchR 25.10.4","text":"NEW Two new options create new simplified factors factors. “top” option keep top N levels, “bottom” option combine levels occurring set percentage. NEW “New factor” function received updates include detailed information methods creating new factors. LANGUAGE Updated Swahili strings. Danish strings translated. New languages track.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25103","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.3","title":"FreesearchR 25.10.3","text":"NEW Improvements translations strings translated. Nearing completion marking strings translation, means (almost) complete interface now translatable.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25102","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.2","title":"FreesearchR 25.10.2","text":"NEW Improvements translations strings translated. NEW detailed label stacked horizontal bar plot. NEW Better .rds import import first element data.frame list-type element supplied. NEW limit imported dataset size added ensure performance hosted version. data limited 100.000 cells dropping rows fit. vast majority users never experience capping, adds layer security stability hosting framework.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-25101","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.10.1","title":"FreesearchR 25.10.1","text":"NEW Improvements translations strings translated. NEW Sample data filtered include select packages (NHANES stRoke). NEW Missings evaluations slightly tweaked include bold significant p-values easier overview.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2592","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.9.2","title":"FreesearchR 25.9.2","text":"NEW Improvements translations strings translated. Euler visualisation option limited plot dichotomous variables. also makes sense.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2591","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.9.1","title":"FreesearchR 25.9.1","text":"NEW Language revised make app accessible easier understand. NEW Foundations introducing internationalised UI introduced. Initial rudimentary translation Danish Swahili included. languages can added well. NEW Alerts guide select important steps aspects introduced. expected expand.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2582","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.8.2","title":"FreesearchR 25.8.2","text":"NEW Including NHANES dataset experimentation. BUG Improved JS correctly handle menu drop downs mobile devices DOCS Updated “Prepare > Overview” “Prepare > Overview filter” better reflect options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2581","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.8.1","title":"FreesearchR 25.8.1","text":"NEW improved use wrap_plot_list() pass additional arguments patchwork::wrap_plots() allowed specify axes align align_axes(). FIX fixed axis text printed Euler diagrams","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2572","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.7.2","title":"FreesearchR 25.7.2","text":"FIX refining hiding drop downs. JavaScript now separate file. Coded GAI help claude.ai. FIX refined iconography navigation FIX updated intro docs.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2571","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.7.1","title":"FreesearchR 25.7.1","text":"NEW UI overhaul navigation update. interface simplified clearly show relationship panels sub-items abandoning multiple levels panel instead show drop-menu. also results simplified sidebar menus room add controls future.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2564","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.4","title":"FreesearchR 25.6.4","text":"app now also published docker container. See README instructions. mainly use hosting app. Work ongoing publish true standalone app, preferably Windows MacOS. FIX improved plot labels.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2563","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.3","title":"FreesearchR 25.6.3","text":"NEW Introducing options evaluate missing observations. Inspired [visdat()] function {visdat} package, specialised function introduced easily visualise data classes missing observations data set. highly increases options visually get overview data assess pattern missing data. Also Evaluate, comparison module introduced compare distribution observations across variables depending missing vs non-missing specified variable. FIX REDCap import module updated visually PAI token now hidden password. module still used running locally accessing sensitive data. minor rewordings updated UI.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2562","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.2","title":"FreesearchR 25.6.2","text":"FIX Added warning using REDCap sensitive data running locally. applies data actually. Considering taking REDCap hosted version. Standalone app works. FIX Reworded completeness filter missingness, commonly used concept. FIX Improved layout around data filters improve usage. FIX Regression table report respects inclusion p-values .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2561","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.6.1","title":"FreesearchR 25.6.1","text":"FIX big allowing browse data FIX caught last bugs initiating creation new variables","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2556","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.6","title":"FreesearchR 25.5.6","text":"FIX note max file size 5 mb FIX added banner dev version shinyapps.io FIX updated intro text","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2555","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.5","title":"FreesearchR 25.5.5","text":"FIX several minor bugs polish FIX include/exclude p-values regression table.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2554","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.4","title":"FreesearchR 25.5.4","text":"FIX correctly omit NAs data_type() call FIX omit NAs plotting Euler diagrams. FIX print correct labels horizontal stacked bars. FIX initial app load feel faster.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2553","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.3","title":"FreesearchR 25.5.3","text":"FIX little polish data import FIX polished REDCap import new code reference REDCapCAST::easy_redcap() function. FIX updated documentation reflect new private hosting Hetzner server Germany.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2552","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.2","title":"FreesearchR 25.5.2","text":"FIX: correct export plots. solution last version broke solved. NEW: added simple loading animation. privately hosted version now live app.freesearchr.org. now, hosted Hetzner Yunohost.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2551","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.5.1","title":"FreesearchR 25.5.1","text":"FIX: correct export single variable plot. NEW: Include app version report reference. NEW: Show progress connecting REDCap database. FIX: Data import code export.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2545","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.5","title":"FreesearchR 25.4.5","text":"BUG: Regression results code returned correctly IMPROVED: analyses results reset data change NEW: app usage tracking hosted app. README updated reflect.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2544","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.4","title":"FreesearchR 25.4.4","text":"Minor updates docs easier citation.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2543","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.3","title":"FreesearchR 25.4.3","text":"NEW: Added variables type filter easily exclude unwanted types. also includes data type rather data class summary table. evaluate. Types simpler, practical version R data class easy interpretation. NEW: logo ! emphasize underlying reliance R also inspire explore. IMPROVED: docs updated much comprehensive. continuously updated. Polishing moved hosted app new address fully reflect name change: https://agdamsbo.shinyapps.io/FreesearchR/","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2542","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.2","title":"FreesearchR 25.4.2","text":"Polished simplified data import module including much improved REDCap import module. CHANGE default_parsing() now ensure unique variable names. NEW Working code output major modules including import, modifications, filter, evaluation, plotting regression. nicely formatted! NEW basics “Getting started”-vignette done, can expanded later.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/news/index.html","id":"freesearchr-2541","dir":"Changelog","previous_headings":"","what":"FreesearchR 25.4.1","title":"FreesearchR 25.4.1","text":"Focus polish improved ui/ux. Updating project name FreesearchR, renamed repository. Graphics coming. may introduce breaking chances others calling installing package. additional future changes planned. complete transition planned attending presenting poster European Stroke Organisation Conference 2025 May. Testing file upload conducted improved. Working improving code export. difficult get perfect. Initial focus extracting enough able learn . Regression calculations, plots, checks improved moved standalone module. Data overview/modifications simplified slightly.","code":""}]