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    ——————————– R environment ———————————
    |setting |value | |:———–|:——————————————| |version |R version 4.4.1 (2024-06-14) | |os |macOS 15.3.1 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2025-04-23 | |rstudio |2024.12.1+563 Kousa Dogwood (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.6.40 @ /usr/local/bin/quarto | |FreesearchR |25.4.3.250423 |
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    + + +
    + + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    +

    Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

    +
    + +
    + + + + + + + diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index 7f51cf33..de2ab26c 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -38,6 +38,8 @@
  • Roadmap
    • @@ -61,8 +63,7 @@
    - -

    FreesearchR

    +

    FreesearchR

    Source: vignettes/FreesearchR.Rmd @@ -156,7 +157,7 @@ data.

    and a few key measures. Also, data filtering is available at two levels:

      -

    • Data type filtering allows to filter by variable data +

    • Data type filtering allows to filter by variable data type

    • Observations level filtering allow to filter data by variable

      • @@ -165,6 +166,9 @@ variable

      Modify

      +

      Re-class, rename, and relabel variables. Subset data, create new +variables and reorder factor levels. Also, compare the modified dataset +to the original and restore the original data.

    diff --git a/articles/data-types.html b/articles/data-types.html index 899b5dc6..e3285709 100644 --- a/articles/data-types.html +++ b/articles/data-types.html @@ -38,6 +38,8 @@
  • Roadmap
    • @@ -61,8 +63,7 @@
    - -

    Data types

    +

    Data types

    Source: vignettes/data-types.Rmd diff --git a/articles/index.html b/articles/index.html index 35e5a3b6..af696f0f 100644 --- a/articles/index.html +++ b/articles/index.html @@ -1,5 +1,5 @@ -Articles • FreesearchR +Articles • FreesearchR Skip to contents @@ -20,6 +20,8 @@
  • Roadmap
  • Q&A
    • @@ -34,8 +36,7 @@
    - -

    Articles

    +

    Articles

    @@ -46,6 +47,10 @@
    FreesearchR
    +
    Session info
    +
    +
    On visuals
    +
    diff --git a/articles/session.html b/articles/session.html new file mode 100644 index 00000000..295e3339 --- /dev/null +++ b/articles/session.html @@ -0,0 +1,1040 @@ + + + + + + + +Session info • FreesearchR + + + + + + + + + + + Skip to contents + + +
    + + + + +
    +
    +

    Session info

    + + + Source: vignettes/session.Rmd +
    session.Rmd
    +
    + + + +
    +library(FreesearchR)
+#> 
+#> Attaching package: 'FreesearchR'
+#> The following object is masked from 'package:base':
+#> 
+#>     sort_by
    +

    This is the session info on the primary build machine. Inspect loaded +packages and the latest build info.

    +
    +

    Platform info +

    +
    +FreesearchR:::session_data$platform |> knitr::kable()
    + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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    quarto1.6.40 @ /usr/local/bin/quarto
    FreesearchR25.4.3.250423
    +
    +
    +

    Libraries +

    +
    +FreesearchR:::session_data$libs|> knitr::kable()
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    +
    +
    +
    + + + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    +

    Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

    +
    + +
    +
    + + + + + + + diff --git a/articles/visuals.html b/articles/visuals.html new file mode 100644 index 00000000..f6cce353 --- /dev/null +++ b/articles/visuals.html @@ -0,0 +1,211 @@ + + + + + + + +On visuals • FreesearchR + + + + + + + + + + + Skip to contents + + +
    + + + + +
    +
    +

    On visuals

    + + + Source: vignettes/visuals.Rmd +
    visuals.Rmd
    +
    + + + +
    +library(FreesearchR)
+#> 
+#> Attaching package: 'FreesearchR'
+#> The following object is masked from 'package:base':
+#> 
+#>     sort_by
    +
    +

    Basic visualisations +

    +

    The goal of FreesearchR is to keep things +simple. Visuals can get very complicated. We provide a selection of +plots, that helps visualise typical clinical and will be enough for most +use cases, and for publishing to most journals.

    +

    If you want to go further, have a look at these sites with +suggestions and sample code for data plotting:

    + +
    +

    Available plots +

    +

    Below are the available plot types listed.

    + +++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    Data typePlot typeDescription
    continuousViolin plotA modern alternative to the classic boxplot to +visualise data distribution
    continuousScatter plotA classic way of showing the association between to +variables
    continuousBox plotA classic way to plot data distribution by groups
    dichotomousStacked horizontal barsA classical way of visualising the distribution of an +ordinal scale like the modified Ranking Scale and known as Grotta +bars
    dichotomousViolin plotA modern alternative to the classic boxplot to +visualise data distribution
    dichotomousSankey plotA way of visualising change between groups
    dichotomousBox plotA classic way to plot data distribution by groups
    dichotomousEuler diagramGenerate area-proportional Euler diagrams to display +set relationships
    categoricalStacked horizontal barsA classical way of visualising the distribution of an +ordinal scale like the modified Ranking Scale and known as Grotta +bars
    categoricalViolin plotA modern alternative to the classic boxplot to +visualise data distribution
    categoricalSankey plotA way of visualising change between groups
    categoricalBox plotA classic way to plot data distribution by groups
    +
    +
    +
    +
    + + + +
    +

    Site built with pkgdown 2.1.1.

    +
    + +
    +

    Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

    +
    + +
    +
    + + + + + + + diff --git a/authors.html b/authors.html index 215852e6..cba7a7ae 100644 --- a/authors.html +++ b/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • FreesearchR +Authors and Citation • FreesearchR Skip to contents @@ -20,6 +20,8 @@
  • Roadmap
  • Q&A
    • @@ -34,8 +36,7 @@
    - -

    Authors and Citation

    +

    Authors and Citation

    diff --git a/index.html b/index.html index 9ebf1c3b..85a52819 100644 --- a/index.html +++ b/index.html @@ -16,6 +16,7 @@ + Skip to contents @@ -40,6 +41,8 @@
  • Roadmap
    • @@ -59,8 +62,11 @@
    -

    FreesearchR -

    +
    +

    FreesearchR + +

    +

    This package is the backbone of the FreesearchR, a free and open-source browser based data exploration and analysis tool intended to democratise clinical research by assisting any researcher to easily evaluate and analyse data and export publication ready results.

    @@ -97,10 +103,12 @@

    Like any other project, this project was never possible without the great work of others. These are some of the sources and packages I have used:

    +

    This project was all written by a human and not by any AI-based tools.