updated favicon

R/app_version.R

@@ -1 +1 @@
-app_version <- function()'v25.4.4.250428'
+app_version <- function()'v25.4.4.250429'

R/launch_FreesearchR.R

@@ -11,7 +11,7 @@
 #' @examples
 #' \dontrun{
 #' data(mtcars)
-#' shiny_FreesearchR(launch.browser = TRUE)
+#' launch_FreesearchR(launch.browser = TRUE)
 #' }
 launch_FreesearchR <- function(...){
   appDir <- system.file("apps", "FreesearchR", package = "FreesearchR")
@@ -22,3 +22,4 @@ launch_FreesearchR <- function(...){
   a <- shiny::runApp(appDir = paste0(appDir,"/app.R"), ...)
   return(invisible(a))
 }
+

README.md

@@ -53,4 +53,6 @@ Like any other project, this project was never possible without the great work o
 
 -   [easystats](https://easystats.github.io/easystats/): the [`performance::check_model()`](https://easystats.github.io/performance/articles/check_model.html) function was central in sparking the idea to create a data analysis tool.
 
+-   [IDEAfilter](https://biogen-inc.github.io/IDEAFilter/): a visually appealing data filter function based on the [{shinyDataFilter}](https://github.com/dgkf/shinyDataFilter).
+
 This project was all written by a human and not by any AI-based tools.

SESSION.md

@@ -1,21 +1,21 @@
 --------------------------------------------------------------------------------
 -------------------------------- R environment ---------------------------------
 --------------------------------------------------------------------------------
-|setting     |value                                 |
+|setting     |value                                      |
-|:-----------|:-------------------------------------|
+|:-----------|:------------------------------------------|
-|version     |R version 4.4.1 (2024-06-14)          |
+|version     |R version 4.4.1 (2024-06-14)               |
-|os          |macOS 15.3.1                          |
+|os          |macOS 15.3.1                               |
-|system      |aarch64, darwin20                     |
+|system      |aarch64, darwin20                          |
-|ui          |RStudio                               |
+|ui          |RStudio                                    |
-|language    |(EN)                                  |
+|language    |(EN)                                       |
-|collate     |en_US.UTF-8                           |
+|collate     |en_US.UTF-8                                |
-|ctype       |en_US.UTF-8                           |
+|ctype       |en_US.UTF-8                                |
-|tz          |Europe/Copenhagen                     |
+|tz          |Europe/Copenhagen                          |
-|date        |2025-04-28                            |
+|date        |2025-04-29                                 |
-|rstudio     |2024.12.1+563 Kousa Dogwood (desktop) |
+|rstudio     |2024.12.1+563 Kousa Dogwood (desktop)      |
-|pandoc      |3.6.4 @ /opt/homebrew/bin/pandoc      |
+|pandoc      |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
-|quarto      |1.6.40 @ /usr/local/bin/quarto        |
+|quarto      |1.6.40 @ /usr/local/bin/quarto             |
-|FreesearchR |25.4.4.250428                         |
+|FreesearchR |25.4.4.250429                              |
                                                                                 
                                                                                 
 --------------------------------------------------------------------------------
@@ -23,41 +23,64 @@
 --------------------------------------------------------------------------------
 |package       |loadedversion |date       |source         |
 |:-------------|:-------------|:----------|:--------------|
+|apexcharter   |0.4.4         |2024-09-06 |CRAN (R 4.4.1) |
 |askpass       |1.2.1         |2024-10-04 |CRAN (R 4.4.1) |
 |assertthat    |0.2.1         |2019-03-21 |CRAN (R 4.4.1) |
+|backports     |1.5.0         |2024-05-23 |CRAN (R 4.4.1) |
+|bayestestR    |0.15.2        |2025-04-28 |CRAN (R 4.4.1) |
 |bit           |4.6.0         |2025-03-06 |CRAN (R 4.4.1) |
 |bit64         |4.6.0-1       |2025-01-16 |CRAN (R 4.4.1) |
+|boot          |1.3-31        |2024-08-28 |CRAN (R 4.4.1) |
+|broom         |1.0.8         |2025-03-28 |CRAN (R 4.4.1) |
+|broom.helpers |1.20.0        |2025-04-24 |CRAN (R 4.4.1) |
+|bsicons       |0.1.2         |2023-11-04 |CRAN (R 4.4.0) |
 |bslib         |0.9.0         |2025-01-30 |CRAN (R 4.4.1) |
 |cachem        |1.1.0         |2024-05-16 |CRAN (R 4.4.1) |
+|callr         |3.7.6         |2024-03-25 |CRAN (R 4.4.0) |
+|cellranger    |1.1.0         |2016-07-27 |CRAN (R 4.4.0) |
 |cffr          |1.2.0         |2025-01-25 |CRAN (R 4.4.1) |
 |class         |7.3-23        |2025-01-01 |CRAN (R 4.4.1) |
 |classInt      |0.4-11        |2025-01-08 |CRAN (R 4.4.1) |
 |cli           |3.6.5         |2025-04-23 |CRAN (R 4.4.1) |
+|commonmark    |1.9.5         |2025-03-17 |CRAN (R 4.4.1) |
+|correlation   |0.8.7         |2025-03-03 |CRAN (R 4.4.1) |
 |crayon        |1.5.3         |2024-06-20 |CRAN (R 4.4.1) |
-|credentials   |2.0.2         |2024-10-04 |CRAN (R 4.4.1) |
+|crosstalk     |1.2.1         |2023-11-23 |CRAN (R 4.4.0) |
 |curl          |6.2.2         |2025-03-24 |CRAN (R 4.4.1) |
 |data.table    |1.17.0        |2025-02-22 |CRAN (R 4.4.1) |
+|datamods      |1.5.3         |2024-10-02 |CRAN (R 4.4.1) |
+|datawizard    |1.0.2         |2025-03-24 |CRAN (R 4.4.1) |
 |desc          |1.4.3         |2023-12-10 |CRAN (R 4.4.1) |
 |devtools      |2.4.5         |2022-10-11 |CRAN (R 4.4.0) |
+|DHARMa        |0.4.7         |2024-10-18 |CRAN (R 4.4.1) |
 |digest        |0.6.37        |2024-08-19 |CRAN (R 4.4.1) |
 |dplyr         |1.1.4         |2023-11-17 |CRAN (R 4.4.0) |
+|DT            |0.33          |2024-04-04 |CRAN (R 4.4.0) |
 |e1071         |1.7-16        |2024-09-16 |CRAN (R 4.4.1) |
+|easystats     |0.7.4         |2025-02-06 |CRAN (R 4.4.1) |
+|effectsize    |1.0.0         |2024-12-10 |CRAN (R 4.4.1) |
 |ellipsis      |0.3.2         |2021-04-29 |CRAN (R 4.4.1) |
 |evaluate      |1.0.3         |2025-01-10 |CRAN (R 4.4.1) |
+|farver        |2.1.2         |2024-05-13 |CRAN (R 4.4.1) |
 |fastmap       |1.2.0         |2024-05-15 |CRAN (R 4.4.1) |
+|fontawesome   |0.5.3         |2024-11-16 |CRAN (R 4.4.1) |
+|forcats       |1.0.0         |2023-01-29 |CRAN (R 4.4.0) |
 |FreesearchR   |25.4.4        |NA         |NA             |
 |fs            |1.6.6         |2025-04-12 |CRAN (R 4.4.1) |
 |generics      |0.1.3         |2022-07-05 |CRAN (R 4.4.1) |
-|gert          |2.1.5         |2025-03-25 |CRAN (R 4.4.1) |
+|ggplot2       |3.5.2         |2025-04-09 |CRAN (R 4.4.1) |
-|gh            |1.4.1         |2024-03-28 |CRAN (R 4.4.0) |
-|gitcreds      |0.1.2         |2022-09-08 |CRAN (R 4.4.1) |
 |glue          |1.8.0         |2024-09-30 |CRAN (R 4.4.1) |
+|gt            |1.0.0         |2025-04-05 |CRAN (R 4.4.1) |
+|gtable        |0.3.6         |2024-10-25 |CRAN (R 4.4.1) |
+|gtsummary     |2.2.0         |2025-04-14 |CRAN (R 4.4.1) |
+|haven         |2.5.4         |2023-11-30 |CRAN (R 4.4.0) |
 |here          |1.0.1         |2020-12-13 |CRAN (R 4.4.1) |
 |hms           |1.1.3         |2023-03-21 |CRAN (R 4.4.0) |
 |htmltools     |0.5.8.1       |2024-04-04 |CRAN (R 4.4.1) |
 |htmlwidgets   |1.6.4         |2023-12-06 |CRAN (R 4.4.0) |
 |httpuv        |1.6.16        |2025-04-16 |CRAN (R 4.4.1) |
-|httr2         |1.1.2         |2025-03-26 |CRAN (R 4.4.1) |
+|IDEAFilter    |0.2.0         |2024-04-15 |CRAN (R 4.4.0) |
+|insight       |1.2.0         |2025-04-22 |CRAN (R 4.4.1) |
 |jquerylib     |0.1.4         |2021-04-26 |CRAN (R 4.4.0) |
 |jsonlite      |2.0.0         |2025-03-27 |CRAN (R 4.4.1) |
 |jsonvalidate  |1.5.0         |2025-02-07 |CRAN (R 4.4.1) |
@@ -65,38 +88,65 @@
 |keyring       |1.3.2         |2023-12-11 |CRAN (R 4.4.0) |
 |knitr         |1.50          |2025-03-16 |CRAN (R 4.4.1) |
 |later         |1.4.2         |2025-04-08 |CRAN (R 4.4.1) |
+|lattice       |0.22-7        |2025-04-02 |CRAN (R 4.4.1) |
 |lifecycle     |1.0.4         |2023-11-07 |CRAN (R 4.4.1) |
+|lme4          |1.1-37        |2025-03-26 |CRAN (R 4.4.1) |
 |magrittr      |2.0.3         |2022-03-30 |CRAN (R 4.4.1) |
+|MASS          |7.3-65        |2025-02-28 |CRAN (R 4.4.1) |
+|Matrix        |1.7-3         |2025-03-11 |CRAN (R 4.4.1) |
 |memoise       |2.0.1         |2021-11-26 |CRAN (R 4.4.0) |
 |mime          |0.13          |2025-03-17 |CRAN (R 4.4.1) |
 |miniUI        |0.1.2         |2025-04-17 |CRAN (R 4.4.1) |
+|minqa         |1.2.8         |2024-08-17 |CRAN (R 4.4.1) |
+|modelbased    |0.10.0        |2025-03-10 |CRAN (R 4.4.1) |
+|nlme          |3.1-168       |2025-03-31 |CRAN (R 4.4.1) |
+|nloptr        |2.2.1         |2025-03-17 |CRAN (R 4.4.1) |
 |openssl       |2.3.2         |2025-02-03 |CRAN (R 4.4.1) |
-|pak           |0.8.0.2       |2025-04-08 |CRAN (R 4.4.1) |
+|parameters    |0.24.2        |2025-03-04 |CRAN (R 4.4.1) |
+|patchwork     |1.3.0         |2024-09-16 |CRAN (R 4.4.1) |
+|performance   |0.13.0        |2025-01-15 |CRAN (R 4.4.1) |
 |phosphoricons |0.2.1         |2024-04-08 |CRAN (R 4.4.0) |
 |pillar        |1.10.2        |2025-04-05 |CRAN (R 4.4.1) |
 |pkgbuild      |1.4.7         |2025-03-24 |CRAN (R 4.4.1) |
 |pkgconfig     |2.0.3         |2019-09-22 |CRAN (R 4.4.1) |
+|pkgdown       |2.1.1         |2025-04-28 |CRAN (R 4.4.1) |
 |pkgload       |1.4.0         |2024-06-28 |CRAN (R 4.4.0) |
+|processx      |3.8.6         |2025-02-21 |CRAN (R 4.4.1) |
 |profvis       |0.4.0         |2024-09-20 |CRAN (R 4.4.1) |
 |promises      |1.3.2         |2024-11-28 |CRAN (R 4.4.1) |
 |proxy         |0.4-27        |2022-06-09 |CRAN (R 4.4.1) |
+|ps            |1.9.1         |2025-04-12 |CRAN (R 4.4.1) |
 |purrr         |1.0.4         |2025-02-05 |CRAN (R 4.4.1) |
+|quarto        |1.4.4         |2024-07-20 |CRAN (R 4.4.0) |
 |R6            |2.6.1         |2025-02-15 |CRAN (R 4.4.1) |
-|rappdirs      |0.3.3         |2021-01-31 |CRAN (R 4.4.1) |
+|rbibutils     |2.3           |2024-10-04 |CRAN (R 4.4.1) |
+|RColorBrewer  |1.1-3         |2022-04-03 |CRAN (R 4.4.1) |
 |Rcpp          |1.0.14        |2025-01-12 |CRAN (R 4.4.1) |
+|Rdpack        |2.6.4         |2025-04-09 |CRAN (R 4.4.1) |
+|reactable     |0.4.4         |2023-03-12 |CRAN (R 4.4.0) |
+|readODS       |2.3.2         |2025-01-13 |CRAN (R 4.4.1) |
 |readr         |2.1.5         |2024-01-10 |CRAN (R 4.4.0) |
+|readxl        |1.4.5         |2025-03-07 |CRAN (R 4.4.1) |
+|reformulas    |0.4.0         |2024-11-03 |CRAN (R 4.4.1) |
 |remotes       |2.5.0         |2024-03-17 |CRAN (R 4.4.1) |
 |renv          |1.1.4         |2025-03-20 |CRAN (R 4.4.1) |
+|report        |0.6.1         |2025-02-07 |CRAN (R 4.4.1) |
+|rio           |1.2.3         |2024-09-25 |CRAN (R 4.4.1) |
 |rlang         |1.1.6         |2025-04-11 |CRAN (R 4.4.1) |
+|rmarkdown     |2.29          |2024-11-04 |CRAN (R 4.4.1) |
 |rprojroot     |2.0.4         |2023-11-05 |CRAN (R 4.4.1) |
 |rsconnect     |1.3.4         |2025-01-22 |CRAN (R 4.4.1) |
 |rstudioapi    |0.17.1        |2024-10-22 |CRAN (R 4.4.1) |
 |sass          |0.4.10        |2025-04-11 |CRAN (R 4.4.1) |
+|scales        |1.4.0         |2025-04-24 |CRAN (R 4.4.1) |
+|see           |0.11.0        |2025-03-11 |CRAN (R 4.4.1) |
 |sessioninfo   |1.2.3         |2025-02-05 |CRAN (R 4.4.1) |
 |shiny         |1.10.0        |2024-12-14 |CRAN (R 4.4.1) |
+|shinybusy     |0.3.3         |2024-03-09 |CRAN (R 4.4.0) |
+|shinyTime     |1.0.3         |2022-08-19 |CRAN (R 4.4.0) |
 |shinyWidgets  |0.9.0         |2025-02-21 |CRAN (R 4.4.1) |
-|sys           |3.4.3         |2024-10-04 |CRAN (R 4.4.1) |
 |tibble        |3.2.1         |2023-03-20 |CRAN (R 4.4.0) |
+|tidyr         |1.3.1         |2024-01-24 |CRAN (R 4.4.1) |
 |tidyselect    |1.2.1         |2024-03-11 |CRAN (R 4.4.0) |
 |toastui       |0.4.0         |2025-04-03 |CRAN (R 4.4.1) |
 |tzdb          |0.5.0         |2025-03-15 |CRAN (R 4.4.1) |
@@ -106,6 +156,8 @@
 |vctrs         |0.6.5         |2023-12-01 |CRAN (R 4.4.0) |
 |vroom         |1.6.5         |2023-12-05 |CRAN (R 4.4.0) |
 |withr         |3.0.2         |2024-10-28 |CRAN (R 4.4.1) |
+|writexl       |1.5.4         |2025-04-15 |CRAN (R 4.4.1) |
 |xfun          |0.52          |2025-04-02 |CRAN (R 4.4.1) |
+|xml2          |1.3.8         |2025-03-14 |CRAN (R 4.4.1) |
 |xtable        |1.8-4         |2019-04-21 |CRAN (R 4.4.1) |
 |yaml          |2.3.10        |2024-07-26 |CRAN (R 4.4.1) |

inst/apps/FreesearchR/app.R

@@ -10,7 +10,7 @@
 #### Current file: /Users/au301842/FreesearchR/R//app_version.R 
 ########
 
-app_version <- function()'v25.4.4.250428'
+app_version <- function()'v25.4.4.250429'
 
 
 ########
@@ -4553,7 +4553,7 @@ import_file_demo_app <- function() {
 #' @examples
 #' \dontrun{
 #' data(mtcars)
-#' shiny_FreesearchR(launch.browser = TRUE)
+#' launch_FreesearchR(launch.browser = TRUE)
 #' }
 launch_FreesearchR <- function(...){
   appDir <- system.file("apps", "FreesearchR", package = "FreesearchR")
@@ -4566,6 +4566,7 @@ launch_FreesearchR <- function(...){
 }
 
 
+
 ########
 #### Current file: /Users/au301842/FreesearchR/R//plot_box.R 
 ########
@@ -9201,14 +9202,15 @@ ui_elements <- list(
         shiny::br(),
         shinyWidgets::radioGroupButtons(
           inputId = "source",
-          selected = "env",
+          selected = "file",
           choices = c(
             "File upload" = "file",
             "REDCap server export" = "redcap",
             "Local or sample data" = "env"
           ),
-          width = "100%"
+          size = "lg"
         ),
+        shiny::tags$script('document.querySelector("#source div").style.width = "100%"'),
         shiny::helpText("Upload a file from your device, get data directly from REDCap or select a sample data set for testing from the app."),
         shiny::br(),
         shiny::br(),
@@ -9679,6 +9681,7 @@ ui <- bslib::page_fixed(
   shiny::tags$head(
     includeHTML(("www/umami-app.html")),
     tags$link(rel = "stylesheet", type = "text/css", href = "style.css")),
+  tags$head(tags$link(rel="shortcut icon", href="favicon.svg")),
   title = "FreesearchR",
   theme = light,
   shiny::useBusyIndicators(),
@@ -9702,7 +9705,7 @@ ui <- bslib::page_fixed(
       ),
       shiny::p(
         style = "margin: 1; color: #888;",
-        shiny::tags$a("AG Damsbo", href = "https://andreas.gdamsbo.dk/", target = "_blank", rel = "noopener noreferrer")," | ", app_version(), " | ", shiny::tags$a("License: AGPLv3", href = "https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Source", href = "https://github.com/agdamsbo/FreesearchR/", target = "_blank", rel = "noopener noreferrer")
+        shiny::tags$a("Docs", href = "https://agdamsbo.github.io/FreesearchR/", target = "_blank", rel = "noopener noreferrer")," | ", app_version(), " | ", shiny::tags$a("License: AGPLv3", href = "https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Source", href = "https://github.com/agdamsbo/FreesearchR/", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Share feedback", href = "https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8", target = "_blank", rel = "noopener noreferrer")
       ),
     )
   )
@@ -10098,6 +10101,7 @@ server <- function(input, output, session) {
 
   #########  Data filter
   # IDEAFilter has the least cluttered UI, but might have a License issue
+  # Consider using shinyDataFilter, though not on CRAN
   data_filter <- IDEAFilter::IDEAFilter("data_filter",
     data = shiny::reactive(rv$data_variables),
     verbose = TRUE

inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf

@@ -5,6 +5,6 @@ account: agdamsbo
 server: shinyapps.io
 hostUrl: https://api.shinyapps.io/v1
 appId: 14600805
-bundleId: 10191506
+bundleId: 10199738
 url: https://agdamsbo.shinyapps.io/FreesearchR/
 version: 1

inst/apps/FreesearchR/server.R

@@ -383,6 +383,7 @@ server <- function(input, output, session) {
 
   #########  Data filter
   # IDEAFilter has the least cluttered UI, but might have a License issue
+  # Consider using shinyDataFilter, though not on CRAN
   data_filter <- IDEAFilter::IDEAFilter("data_filter",
     data = shiny::reactive(rv$data_variables),
     verbose = TRUE

inst/apps/FreesearchR/ui.R

@@ -35,14 +35,15 @@ ui_elements <- list(
         shiny::br(),
         shinyWidgets::radioGroupButtons(
           inputId = "source",
-          selected = "env",
+          selected = "file",
           choices = c(
             "File upload" = "file",
             "REDCap server export" = "redcap",
             "Local or sample data" = "env"
           ),
-          width = "100%"
+          size = "lg"
         ),
+        shiny::tags$script('document.querySelector("#source div").style.width = "100%"'),
         shiny::helpText("Upload a file from your device, get data directly from REDCap or select a sample data set for testing from the app."),
         shiny::br(),
         shiny::br(),
@@ -513,6 +514,7 @@ ui <- bslib::page_fixed(
   shiny::tags$head(
     includeHTML(("www/umami-app.html")),
     tags$link(rel = "stylesheet", type = "text/css", href = "style.css")),
+  tags$head(tags$link(rel="shortcut icon", href="favicon.svg")),
   title = "FreesearchR",
   theme = light,
   shiny::useBusyIndicators(),
@@ -536,7 +538,7 @@ ui <- bslib::page_fixed(
       ),
       shiny::p(
         style = "margin: 1; color: #888;",
-        shiny::tags$a("AG Damsbo", href = "https://andreas.gdamsbo.dk/", target = "_blank", rel = "noopener noreferrer")," | ", app_version(), " | ", shiny::tags$a("License: AGPLv3", href = "https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Source", href = "https://github.com/agdamsbo/FreesearchR/", target = "_blank", rel = "noopener noreferrer")
+        shiny::tags$a("Docs", href = "https://agdamsbo.github.io/FreesearchR/", target = "_blank", rel = "noopener noreferrer")," | ", app_version(), " | ", shiny::tags$a("License: AGPLv3", href = "https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Source", href = "https://github.com/agdamsbo/FreesearchR/", target = "_blank", rel = "noopener noreferrer"), " | ", shiny::tags$a("Share feedback", href = "https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8", target = "_blank", rel = "noopener noreferrer")
       ),
     )
   )

inst/apps/FreesearchR/www/intro.md

@@ -4,7 +4,7 @@ This is the ***FreesearchR*** data analysis tool. We intend the ***FreesearchR**
 
 By intention, this tool has been designed to be simple to use with a minimum of mandatory options to keep the workflow streamlined, while also including a few options to go even further.
 
-There are some simple steps to go through (see corresponding tabs in the top):
+Here is a brief summary of the functions:
 
 1.  Import data to get started. This can be a spreadsheet/file on your machine, direct export from a REDCap server, sample data or data from a your local environment if run locally.
 
@@ -12,7 +12,7 @@ There are some simple steps to go through (see corresponding tabs in the top):
 
 1.  Evaluate data using descriptive analyses methods and inspect cross-correlations
 
-1.  Create simple, clean plots for data overview.
+1.  Create and export simple, clean plots for data overview and insights.
 
 1.  Create regression models for even more advanced data analyses
 
@@ -30,4 +30,4 @@ There are some simple steps to go through (see corresponding tabs in the top):
     
     -   Code to recreate all steps locally
 
-The full [project documentation is here](https://agdamsbo.github.io/FreesearchR/) and all code used is [freely available to read, copy, modify and improve](https://github.com/agdamsbo/FreesearchR) under an [open source license](https://github.com/agdamsbo/FreesearchR/blob/main/LICENSE.md)! Contributions are welcome and much appreciated and can be reporting issues, suggesting new functionality, improving code or any other feedback [here](https://github.com/agdamsbo/FreesearchR/issues).
+The full [project documentation is here](https://agdamsbo.github.io/FreesearchR/) where you'll find detailed description of the app and link to the source code! If you want to [share feedback, please follow this link to a simple survey](https://redcap.au.dk/surveys/?s=JPCLPTXYDKFA8DA8), or share on [GitHub](https://github.com/agdamsbo/FreesearchR/issues).

inst/apps/FreesearchR/www/style.css

@@ -11,6 +11,7 @@
 .container-fluid > .nav > li >
                         a[data-value='FreesearchR'] {font-size: 28px}
 
+
 /* from datamods */
 .show-block {
   display: block !important;

inst/assets/css/FreesearchR.css

@@ -11,6 +11,7 @@
 .container-fluid > .nav > li >
                         a[data-value='FreesearchR'] {font-size: 28px}
 
+
 /* from datamods */
 .show-block {
   display: block !important;

man/launch_FreesearchR.Rd

@@ -18,6 +18,6 @@ All data.frames in the global environment will be accessible through the app.
 \examples{
 \dontrun{
 data(mtcars)
-shiny_FreesearchR(launch.browser = TRUE)
+launch_FreesearchR(launch.browser = TRUE)
 }
 }

pkgdown/favicon/site.webmanifest

@@ -0,0 +1,21 @@
+{
+  "name": "FreesearchR",
+  "short_name": "FreesearchR",
+  "icons": [
+    {
+      "src": "/FreesearchR/web-app-manifest-192x192.png",
+      "sizes": "192x192",
+      "type": "image/png",
+      "purpose": "maskable"
+    },
+    {
+      "src": "/FreesearchR/web-app-manifest-512x512.png",
+      "sizes": "512x512",
+      "type": "image/png",
+      "purpose": "maskable"
+    }
+  ],
+  "theme_color": "#ffffff",
+  "background_color": "#ffffff",
+  "display": "standalone"
+}

renv.lock

@@ -653,11 +653,11 @@
     },
     "RcppArmadillo": {
       "Package": "RcppArmadillo",
-      "Version": "14.4.1-1",
+      "Version": "14.4.2-1",
       "Source": "Repository",
       "Type": "Package",
       "Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library",
-      "Date": "2025-03-27",
+      "Date": "2025-04-25",
       "Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"edd@debian.org\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))",
       "Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries.  The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
       "License": "GPL (>= 2)",
@@ -967,19 +967,19 @@
     },
     "bayestestR": {
       "Package": "bayestestR",
-      "Version": "0.15.2",
+      "Version": "0.15.3",
       "Source": "Repository",
       "Type": "Package",
       "Title": "Understand and Describe Bayesian Models and Posterior Distributions",
-      "Authors@R": "c(person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"cre\"), email = \"dom.makowski@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Daniel\", family = \"Lüdecke\", role = \"aut\", email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = \"aut\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Micah K.\", family = \"Wilson\", role = \"aut\", email = \"micah.k.wilson@curtin.edu.au\", comment = c(ORCID = \"0000-0003-4143-7308\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Paul-Christian\", family = \"Bürkner\", role = \"rev\", email = \"paul.buerkner@gmail.com\"), person(given = \"Tristan\", family = \"Mahr\", role = \"rev\", email = \"tristan.mahr@wisc.edu\", comment = c(ORCID = \"0000-0002-8890-5116\")), person(given = \"Henrik\", family = \"Singmann\", role = \"ctb\", email = \"singmann@gmail.com\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(given = \"Quentin F.\", family = \"Gronau\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5510-6943\")), person(given = \"Sam\", family = \"Crawley\", role = \"ctb\", email = \"sam@crawley.nz\", comment = c(ORCID = \"0000-0002-7847-0411\")))",
+      "Authors@R": "c(person(given = \"Dominique\", family = \"Makowski\", role = c(\"aut\", \"cre\"), email = \"officialeasystats@gmail.com\", comment = c(ORCID = \"0000-0001-5375-9967\")), person(given = \"Daniel\", family = \"Lüdecke\", role = \"aut\", email = \"d.luedecke@uke.de\", comment = c(ORCID = \"0000-0002-8895-3206\")), person(given = \"Mattan S.\", family = \"Ben-Shachar\", role = \"aut\", email = \"matanshm@post.bgu.ac.il\", comment = c(ORCID = \"0000-0002-4287-4801\")), person(given = \"Indrajeet\", family = \"Patil\", role = \"aut\", email = \"patilindrajeet.science@gmail.com\", comment = c(ORCID = \"0000-0003-1995-6531\")), person(given = \"Micah K.\", family = \"Wilson\", role = \"aut\", email = \"micah.k.wilson@curtin.edu.au\", comment = c(ORCID = \"0000-0003-4143-7308\")), person(given = \"Brenton M.\", family = \"Wiernik\", role = \"aut\", email = \"brenton@wiernik.org\", comment = c(ORCID = \"0000-0001-9560-6336\")), person(given = \"Paul-Christian\", family = \"Bürkner\", role = \"rev\", email = \"paul.buerkner@gmail.com\"), person(given = \"Tristan\", family = \"Mahr\", role = \"rev\", email = \"tristan.mahr@wisc.edu\", comment = c(ORCID = \"0000-0002-8890-5116\")), person(given = \"Henrik\", family = \"Singmann\", role = \"ctb\", email = \"singmann@gmail.com\", comment = c(ORCID = \"0000-0002-4842-3657\")), person(given = \"Quentin F.\", family = \"Gronau\", role = \"ctb\", comment = c(ORCID = \"0000-0001-5510-6943\")), person(given = \"Sam\", family = \"Crawley\", role = \"ctb\", email = \"sam@crawley.nz\", comment = c(ORCID = \"0000-0002-7847-0411\")))",
-      "Maintainer": "Dominique Makowski <dom.makowski@gmail.com>",
+      "Maintainer": "Dominique Makowski <officialeasystats@gmail.com>",
       "Description": "Provides utilities to describe posterior distributions and Bayesian models. It includes point-estimates such as Maximum A Posteriori (MAP), measures of dispersion (Highest Density Interval - HDI; Kruschke, 2015 <doi:10.1016/C2012-0-00477-2>) and indices used for null-hypothesis testing (such as ROPE percentage, pd and Bayes factors). References: Makowski et al. (2021) <doi:10.21105/joss.01541>.",
       "Depends": [
         "R (>= 3.6)"
       ],
       "Imports": [
-        "insight (>= 1.0.1)",
+        "insight (>= 1.1.0)",
-        "datawizard (>= 1.0.0)",
+        "datawizard (>= 1.0.2)",
         "graphics",
         "methods",
         "stats",
@@ -1008,7 +1008,7 @@
         "lavaan",
         "lme4",
         "logspline (>= 2.1.21)",
-        "marginaleffects (>= 0.24.0)",
+        "marginaleffects (>= 0.25.0)",
         "MASS",
         "mclust",
         "mediation",
@@ -1017,8 +1017,8 @@
         "parameters",
         "patchwork",
         "performance",
-        "quadprog",
         "posterior",
+        "quadprog",
         "RcppEigen",
         "rmarkdown",
         "rstan",
@@ -1330,7 +1330,7 @@
     },
     "broom.helpers": {
       "Package": "broom.helpers",
-      "Version": "1.20.0",
+      "Version": "1.21.0",
       "Source": "Repository",
       "Title": "Helpers for Model Coefficients Tibbles",
       "Authors@R": "c( person(\"Joseph\", \"Larmarange\", , \"joseph@larmarange.net\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7097-700X\")), person(\"Daniel D.\", \"Sjoberg\", , \"danield.sjoberg@gmail.com\", role = \"aut\", comment = c(ORCID = \"0000-0003-0862-2018\")) )",
@@ -1406,7 +1406,8 @@
         "survival",
         "testthat (>= 3.0.0)",
         "tidycmprsk",
-        "VGAM"
+        "VGAM",
+        "svyVGAM"
       ],
       "VignetteBuilder": "knitr",
       "RdMacros": "lifecycle",
@@ -5406,31 +5407,6 @@
       "Author": "Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>), Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>), Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>), Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>), Rémi Thériault [aut] (<https://orcid.org/0000-0003-4315-6788>)",
       "Repository": "CRAN"
     },
-    "munsell": {
-      "Package": "munsell",
-      "Version": "0.5.1",
-      "Source": "Repository",
-      "Type": "Package",
-      "Title": "Utilities for Using Munsell Colours",
-      "Author": "Charlotte Wickham <cwickham@gmail.com>",
-      "Maintainer": "Charlotte Wickham <cwickham@gmail.com>",
-      "Description": "Provides easy access to, and manipulation of, the Munsell  colours. Provides a mapping between Munsell's  original notation (e.g. \"5R 5/10\") and hexadecimal strings suitable  for use directly in R graphics. Also provides utilities  to explore slices through the Munsell colour tree, to transform  Munsell colours and display colour palettes.",
-      "Suggests": [
-        "ggplot2",
-        "testthat"
-      ],
-      "Imports": [
-        "colorspace",
-        "methods"
-      ],
-      "License": "MIT + file LICENSE",
-      "URL": "https://cran.r-project.org/package=munsell, https://github.com/cwickham/munsell/",
-      "RoxygenNote": "7.3.1",
-      "Encoding": "UTF-8",
-      "BugReports": "https://github.com/cwickham/munsell/issues",
-      "NeedsCompilation": "no",
-      "Repository": "CRAN"
-    },
     "nlme": {
       "Package": "nlme",
       "Version": "3.1-168",
@@ -5630,7 +5606,7 @@
     },
     "openxlsx2": {
       "Package": "openxlsx2",
-      "Version": "1.14",
+      "Version": "1.15",
       "Source": "Repository",
       "Type": "Package",
       "Title": "Read, Write and Edit 'xlsx' Files",
@@ -7662,16 +7638,16 @@
     },
     "scales": {
       "Package": "scales",
-      "Version": "1.3.0",
+      "Version": "1.4.0",
       "Source": "Repository",
       "Title": "Scale Functions for Visualization",
-      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\")), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit, PBC\", role = c(\"cph\", \"fnd\")) )",
+      "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\"), person(\"Thomas Lin\", \"Pedersen\", , \"thomas.pedersen@posit.co\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0002-5147-4711\")), person(\"Dana\", \"Seidel\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )",
       "Description": "Graphical scales map data to aesthetics, and provide methods for automatically determining breaks and labels for axes and legends.",
       "License": "MIT + file LICENSE",
       "URL": "https://scales.r-lib.org, https://github.com/r-lib/scales",
       "BugReports": "https://github.com/r-lib/scales/issues",
       "Depends": [
-        "R (>= 3.6)"
+        "R (>= 4.1)"
       ],
       "Imports": [
         "cli",
@@ -7679,10 +7655,9 @@
         "glue",
         "labeling",
         "lifecycle",
-        "munsell (>= 0.5)",
         "R6",
         "RColorBrewer",
-        "rlang (>= 1.0.0)",
+        "rlang (>= 1.1.0)",
         "viridisLite"
       ],
       "Suggests": [
@@ -7696,11 +7671,12 @@
       ],
       "Config/Needs/website": "tidyverse/tidytemplate",
       "Config/testthat/edition": "3",
+      "Config/usethis/last-upkeep": "2025-04-23",
       "Encoding": "UTF-8",
       "LazyLoad": "yes",
-      "RoxygenNote": "7.2.3",
+      "RoxygenNote": "7.3.2",
-      "NeedsCompilation": "yes",
+      "NeedsCompilation": "no",
-      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit, PBC [cph, fnd]",
+      "Author": "Hadley Wickham [aut], Thomas Lin Pedersen [cre, aut] (<https://orcid.org/0000-0002-5147-4711>), Dana Seidel [aut], Posit Software, PBC [cph, fnd] (03wc8by49)",
       "Maintainer": "Thomas Lin Pedersen <thomas.pedersen@posit.co>",
       "Repository": "CRAN"
     },