version bump - rails on data browse

library ref missing
2025-09-12 09:59:39 +02:00 · 2025-06-04 15:10:35 +02:00 · 2025-06-04 14:59:45 +02:00
9 changed files with 93 additions and 89 deletions
--- a/CITATION.cff
+++ b/CITATION.cff
@ -9,7 +9,7 @@ type: software
 license: AGPL-3.0-or-later
 title: 'FreesearchR: A free and open-source browser based data analysis tool for researchers
  with publication ready output'
-version: 25.5.6
+version: 25.6.1
 doi: 10.5281/zenodo.14527429
 identifiers:
 - type: url
--- a/2
+++ b/2
@ -1,6 +1,6 @@
 Package: FreesearchR
 Title: A free and open-source browser based data analysis tool for researchers with publication ready output
-Version: 25.5.6
+Version: 25.6.1
 Authors@R: c(
    person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7559-1154")),
--- a/NEWS.md
+++ b/NEWS.md
@ -1,3 +1,9 @@
+# FreesearchR 25.6.1
+
+- *FIX* big not allowing to browse data
+
+- *FIX* caught the last bugs when initiating the creation of new variables
+
 # FreesearchR 25.5.6

 - *FIX* note on max file size of 5 mb
--- a/R/app_version.R
+++ b/R/app_version.R
@ -1 +1 @@
-app_version <- function()'25.5.6'
+app_version <- function()'25.6.1'
--- a/R/datagrid-infos-mod.R
+++ b/R/datagrid-infos-mod.R
@ -103,7 +103,7 @@ show_data <- function(data,
        title
      ),
      tags$div(
-        style = css(minHeight = validateCssUnit(options$height)),
+        style = htmltools::css(minHeight = htmltools::validateCssUnit(options$height)),
        toastui::renderDatagrid2(datatable)
      ),
      size = "xl",
@ -118,25 +118,25 @@ show_data <- function(data,
 #' @importFrom htmltools tagList tags css
 describe_col_char <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("text-aa"),
      "character"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Unique:"), length(unique(x))
+          datamods:::i18n("Unique:"), length(unique(x))
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
-          style = css(whiteSpace = "normal", wordBreak = "break-all"),
-          i18n("Most Common:"), gsub(
+          style = htmltools::css(whiteSpace = "normal", wordBreak = "break-all"),
+          datamods:::i18n("Most Common:"), gsub(
            pattern = "'",
            replacement = "\u07F4",
            x = names(sort(table(x), decreasing = TRUE))[1]
@ -161,16 +161,16 @@ describe_col_factor <- function(x, with_summary = TRUE) {
  two <- count[!is.na(names(count))][2]
  missing <- count[is.na(names(count))]
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("list-bullets"),
      "factor"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
          names(one), ":", fmt_p(one, total)
        ),
@ -190,27 +190,27 @@ describe_col_factor <- function(x, with_summary = TRUE) {

 describe_col_num <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("hash"),
      "numeric"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Min:"), round(min(x, na.rm = TRUE), 2)
+          datamods:::i18n("Min:"), round(min(x, na.rm = TRUE), 2)
        ),
        tags$div(
-          i18n("Mean:"), round(mean(x, na.rm = TRUE), 2)
+          datamods:::i18n("Mean:"), round(mean(x, na.rm = TRUE), 2)
        ),
        tags$div(
-          i18n("Max:"), round(max(x, na.rm = TRUE), 2)
+          datamods:::i18n("Max:"), round(max(x, na.rm = TRUE), 2)
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        )
      )
    }
@ -220,24 +220,24 @@ describe_col_num <- function(x, with_summary = TRUE) {

 describe_col_date <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("calendar"),
      "date"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Min:"), min(x, na.rm = TRUE)
+          datamods:::i18n("Min:"), min(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Max:"), max(x, na.rm = TRUE)
+          datamods:::i18n("Max:"), max(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
          "\u00A0"
@ -249,24 +249,24 @@ describe_col_date <- function(x, with_summary = TRUE) {

 describe_col_datetime <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("clock"),
      "datetime"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Min:"), min(x, na.rm = TRUE)
+          datamods:::i18n("Min:"), min(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Max:"), max(x, na.rm = TRUE)
+          datamods:::i18n("Max:"), max(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
          "\u00A0"
@ -279,21 +279,21 @@ describe_col_datetime <- function(x, with_summary = TRUE) {

 describe_col_other <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("clock"),
      paste(class(x), collapse = ", ")
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Unique:"), length(unique(x))
+          datamods:::i18n("Unique:"), length(unique(x))
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
          "\u00A0"
--- a/R/hosted_version.R
+++ b/R/hosted_version.R
@ -1 +1 @@
-hosted_version <- function()'v25.5.6-250516'
+hosted_version <- function()'v25.6.1-250604'
--- a/R/sysdata.rda
+++ b/R/sysdata.rda
--- a/SESSION.md
+++ b/SESSION.md
@ -11,11 +11,11 @@
 |collate     |en_US.UTF-8                                |
 |ctype       |en_US.UTF-8                                |
 |tz          |Europe/Copenhagen                          |
-|date        |2025-05-16                                 |
+|date        |2025-06-04                                 |
 |rstudio     |2025.05.0+496 Mariposa Orchid (desktop)    |
 |pandoc      |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
 |quarto      |1.7.30 @ /usr/local/bin/quarto             |
-|FreesearchR |25.5.6.250516                              |
+|FreesearchR |25.6.1.250604                              |
                                                                                
                                                                                
 --------------------------------------------------------------------------------
@ -53,7 +53,6 @@
 |colorspace        |2.1-1         |2024-07-26 |CRAN (R 4.4.1) |
 |commonmark        |1.9.5         |2025-03-17 |CRAN (R 4.4.1) |
 |crayon            |1.5.3         |2024-06-20 |CRAN (R 4.4.1) |
-|credentials       |2.0.2         |2024-10-04 |CRAN (R 4.4.1) |
 |curl              |6.2.2         |2025-03-24 |CRAN (R 4.4.1) |
 |data.table        |1.17.0        |2025-02-22 |CRAN (R 4.4.1) |
 |datamods          |1.5.3         |2024-10-02 |CRAN (R 4.4.1) |
@ -85,19 +84,16 @@
 |foreach           |1.5.2         |2022-02-02 |CRAN (R 4.4.0) |
 |foreign           |0.8-90        |2025-03-31 |CRAN (R 4.4.1) |
 |Formula           |1.2-5         |2023-02-24 |CRAN (R 4.4.1) |
-|FreesearchR       |25.5.6        |NA         |NA             |
+|FreesearchR       |25.6.1        |NA         |NA             |
 |fs                |1.6.6         |2025-04-12 |CRAN (R 4.4.1) |
 |gdtools           |0.4.2         |2025-03-27 |CRAN (R 4.4.1) |
 |generics          |0.1.3         |2022-07-05 |CRAN (R 4.4.1) |
-|gert              |2.1.5         |2025-03-25 |CRAN (R 4.4.1) |
 |ggalluvial        |0.12.5        |2023-02-22 |CRAN (R 4.4.0) |
 |ggcorrplot        |0.1.4.1       |2023-09-05 |CRAN (R 4.4.0) |
 |ggforce           |0.4.2         |2024-02-19 |CRAN (R 4.4.0) |
 |ggplot2           |3.5.2         |2025-04-09 |CRAN (R 4.4.1) |
 |ggridges          |0.5.6         |2024-01-23 |CRAN (R 4.4.0) |
 |ggstats           |0.9.0         |2025-03-10 |CRAN (R 4.4.1) |
-|gh                |1.4.1         |2024-03-28 |CRAN (R 4.4.0) |
-|gitcreds          |0.1.2         |2022-09-08 |CRAN (R 4.4.1) |
 |glue              |1.8.0         |2024-09-30 |CRAN (R 4.4.1) |
 |gridExtra         |2.3           |2017-09-09 |CRAN (R 4.4.1) |
 |gt                |1.0.0         |2025-04-05 |CRAN (R 4.4.1) |
@ -111,7 +107,6 @@
 |htmltools         |0.5.8.1       |2024-04-04 |CRAN (R 4.4.1) |
 |htmlwidgets       |1.6.4         |2023-12-06 |CRAN (R 4.4.0) |
 |httpuv            |1.6.16        |2025-04-16 |CRAN (R 4.4.1) |
-|httr2             |1.1.2         |2025-03-26 |CRAN (R 4.4.1) |
 |IDEAFilter        |0.2.0         |2024-04-15 |CRAN (R 4.4.0) |
 |insight           |1.2.0         |2025-04-22 |CRAN (R 4.4.1) |
 |iterators         |1.0.14        |2022-02-05 |CRAN (R 4.4.1) |
@ -124,11 +119,9 @@
 |later             |1.4.2         |2025-04-08 |CRAN (R 4.4.1) |
 |lattice           |0.22-7        |2025-04-02 |CRAN (R 4.4.1) |
 |lifecycle         |1.0.4         |2023-11-07 |CRAN (R 4.4.1) |
-|litedown          |0.7           |2025-04-08 |CRAN (R 4.4.1) |
 |lme4              |1.1-37        |2025-03-26 |CRAN (R 4.4.1) |
 |lubridate         |1.9.4         |2024-12-08 |CRAN (R 4.4.1) |
 |magrittr          |2.0.3         |2022-03-30 |CRAN (R 4.4.1) |
-|markdown          |2.0           |2025-03-23 |CRAN (R 4.4.1) |
 |MASS              |7.3-65        |2025-02-28 |CRAN (R 4.4.1) |
 |Matrix            |1.7-3         |2025-03-11 |CRAN (R 4.4.1) |
 |memoise           |2.0.1         |2021-11-26 |CRAN (R 4.4.0) |
@ -167,7 +160,6 @@
 |R6                |2.6.1         |2025-02-15 |CRAN (R 4.4.1) |
 |ragg              |1.4.0         |2025-04-10 |CRAN (R 4.4.1) |
 |rankinPlot        |1.1.0         |2023-01-30 |CRAN (R 4.4.0) |
-|rappdirs          |0.3.3         |2021-01-31 |CRAN (R 4.4.1) |
 |rbibutils         |2.3           |2024-10-04 |CRAN (R 4.4.1) |
 |RColorBrewer      |1.1-3         |2022-04-03 |CRAN (R 4.4.1) |
 |Rcpp              |1.0.14        |2025-01-12 |CRAN (R 4.4.1) |
@ -204,7 +196,6 @@
 |shinyWidgets      |0.9.0         |2025-02-21 |CRAN (R 4.4.1) |
 |stringi           |1.8.7         |2025-03-27 |CRAN (R 4.4.1) |
 |stringr           |1.5.1         |2023-11-14 |CRAN (R 4.4.0) |
-|sys               |3.4.3         |2024-10-04 |CRAN (R 4.4.1) |
 |systemfonts       |1.2.2         |2025-04-04 |CRAN (R 4.4.1) |
 |testthat          |3.2.3         |2025-01-13 |CRAN (R 4.4.1) |
 |textshaping       |1.0.0         |2025-01-20 |CRAN (R 4.4.1) |
--- a/inst/apps/FreesearchR/app.R
+++ b/inst/apps/FreesearchR/app.R
@ -49,7 +49,7 @@ library(rlang)
 #### Current file: /Users/au301842/FreesearchR/R//app_version.R 
 ########

-app_version <- function()'25.5.6'
+app_version <- function()'25.6.1'


 ########
@ -3078,7 +3078,7 @@ show_data <- function(data,
        title
      ),
      tags$div(
-        style = css(minHeight = validateCssUnit(options$height)),
+        style = htmltools::css(minHeight = htmltools::validateCssUnit(options$height)),
        toastui::renderDatagrid2(datatable)
      ),
      size = "xl",
@ -3093,25 +3093,25 @@ show_data <- function(data,
 #' @importFrom htmltools tagList tags css
 describe_col_char <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("text-aa"),
      "character"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Unique:"), length(unique(x))
+          datamods:::i18n("Unique:"), length(unique(x))
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
-          style = css(whiteSpace = "normal", wordBreak = "break-all"),
-          i18n("Most Common:"), gsub(
+          style = htmltools::css(whiteSpace = "normal", wordBreak = "break-all"),
+          datamods:::i18n("Most Common:"), gsub(
            pattern = "'",
            replacement = "\u07F4",
            x = names(sort(table(x), decreasing = TRUE))[1]
@ -3136,16 +3136,16 @@ describe_col_factor <- function(x, with_summary = TRUE) {
  two <- count[!is.na(names(count))][2]
  missing <- count[is.na(names(count))]
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("list-bullets"),
      "factor"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
          names(one), ":", fmt_p(one, total)
        ),
@ -3165,27 +3165,27 @@ describe_col_factor <- function(x, with_summary = TRUE) {

 describe_col_num <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("hash"),
      "numeric"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Min:"), round(min(x, na.rm = TRUE), 2)
+          datamods:::i18n("Min:"), round(min(x, na.rm = TRUE), 2)
        ),
        tags$div(
-          i18n("Mean:"), round(mean(x, na.rm = TRUE), 2)
+          datamods:::i18n("Mean:"), round(mean(x, na.rm = TRUE), 2)
        ),
        tags$div(
-          i18n("Max:"), round(max(x, na.rm = TRUE), 2)
+          datamods:::i18n("Max:"), round(max(x, na.rm = TRUE), 2)
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        )
      )
    }
@ -3195,24 +3195,24 @@ describe_col_num <- function(x, with_summary = TRUE) {

 describe_col_date <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("calendar"),
      "date"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Min:"), min(x, na.rm = TRUE)
+          datamods:::i18n("Min:"), min(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Max:"), max(x, na.rm = TRUE)
+          datamods:::i18n("Max:"), max(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
          "\u00A0"
@ -3224,24 +3224,24 @@ describe_col_date <- function(x, with_summary = TRUE) {

 describe_col_datetime <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("clock"),
      "datetime"
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Min:"), min(x, na.rm = TRUE)
+          datamods:::i18n("Min:"), min(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Max:"), max(x, na.rm = TRUE)
+          datamods:::i18n("Max:"), max(x, na.rm = TRUE)
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
          "\u00A0"
@ -3254,21 +3254,21 @@ describe_col_datetime <- function(x, with_summary = TRUE) {

 describe_col_other <- function(x, with_summary = TRUE) {
  tags$div(
-    style = css(padding = "3px 0", fontSize = "x-small"),
+    style = htmltools::css(padding = "3px 0", fontSize = "x-small"),
    tags$div(
-      style = css(fontStyle = "italic"),
+      style = htmltools::css(fontStyle = "italic"),
      get_var_icon(x),
      # phosphoricons::ph("clock"),
      paste(class(x), collapse = ", ")
    ),
    if (with_summary) {
      tagList(
-        tags$hr(style = css(margin = "3px 0")),
+        tags$hr(style = htmltools::css(margin = "3px 0")),
        tags$div(
-          i18n("Unique:"), length(unique(x))
+          datamods:::i18n("Unique:"), length(unique(x))
        ),
        tags$div(
-          i18n("Missing:"), sum(is.na(x))
+          datamods:::i18n("Missing:"), sum(is.na(x))
        ),
        tags$div(
          "\u00A0"
@ -3996,7 +3996,7 @@ simple_snake <- function(data){
 #### Current file: /Users/au301842/FreesearchR/R//hosted_version.R 
 ########

-hosted_version <- function()'v25.5.6-250516'
+hosted_version <- function()'v25.6.1-250604'


 ########
@ -10368,7 +10368,14 @@ server <- function(input, output, session) {
  )

  observeEvent(input$modal_browse, {
+    tryCatch(
+      {
        show_data(REDCapCAST::fct_drop(rv$data_filtered), title = "Uploaded data overview", type = "modal")
+      },
+      error = function(err) {
+        showNotification(paste0("We encountered the following error browsing your data: ", err), type = "err")
+      }
+    )
  })

  output$original_str <- renderPrint({
Author	SHA1	Message	Date
Andreas Gammelgaard Damsbo	111c0663bc	version bump - rails on data browse Some checks failed pkgdown.yaml / pkgdown (push) Has been cancelled Details	2025-06-04 15:10:35 +02:00
Andreas Gammelgaard Damsbo	a51e7f2877	library ref missing	2025-06-04 14:59:45 +02:00