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c7b879f458
...
de66379a9e
14 changed files with 62 additions and 157 deletions
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@ -9,7 +9,7 @@ type: software
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license: AGPL-3.0-or-later
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title: 'FreesearchR: A free and open-source browser based data analysis tool for researchers
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with publication ready output'
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version: 25.6.4
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version: 25.6.3
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doi: 10.5281/zenodo.14527429
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identifiers:
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- type: url
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@ -1,6 +1,6 @@
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Package: FreesearchR
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Title: A free and open-source browser based data analysis tool for researchers with publication ready output
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Version: 25.6.4
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Version: 25.6.3
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Authors@R: c(
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person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"),
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comment = c(ORCID = "0000-0002-7559-1154")),
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6
NEWS.md
6
NEWS.md
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@ -1,9 +1,3 @@
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# FreesearchR 25.6.4
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The app is now also published as a docker container. See the README for instructions. It is mainly to use for hosting the app. Work is ongoing to publish a true standalone app, preferably for both Windows and MacOS.
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- *FIX* improved plot labels.
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# FreesearchR 25.6.3
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- *NEW* Introducing more options to evaluate missing observations. Inspired by the [visdat()] function from the {visdat} package, a specialised function has been introduced to easily visualise data classes and missing observations in the data set. This highly increases the options to visually get an overview of the data and to assess the pattern of missing data. Also under Evaluate, a comparison module has been introduced to compare the distribution of observations across variables depending on the missing vs non-missing in a specified variable.
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@ -1 +1 @@
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app_version <- function()'25.6.4'
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app_version <- function()'25.6.3'
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@ -337,14 +337,7 @@ data_visuals_server <- function(id,
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)
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shiny::withProgress(message = "Drawing the plot. Hold tight for a moment..", {
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rv$plot <- rlang::exec(
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create_plot,
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!!!append_list(
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data(),
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parameters,
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"data"
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)
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)
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rv$plot <- rlang::exec(create_plot, !!!append_list(data(), parameters, "data"))
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})
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rv$code <- glue::glue("FreesearchR::create_plot(df,{list2str(parameters)})")
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@ -400,12 +393,13 @@ data_visuals_server <- function(id,
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paste0("plot.", input$plot_type)
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}),
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content = function(file) {
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if (inherits(rv$plot, "patchwork")) {
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if (inherits(rv$plot,"patchwork")){
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plot <- rv$plot
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} else if (inherits(rv$plot, "ggplot")) {
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} else if (inherits(rv$plot,"ggplot")){
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plot <- rv$plot
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} else {
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}else {
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plot <- rv$plot[[1]]
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}
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# browser()
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shiny::withProgress(message = "Drawing the plot. Hold on for a moment..", {
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@ -665,12 +659,12 @@ create_plot <- function(data, type, pri, sec, ter = NULL, ...) {
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out <- do.call(
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type,
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modifyList(parameters, list(data = data))
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modifyList(parameters,list(data=data))
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)
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code <- rlang::call2(type, !!!parameters, .ns = "FreesearchR")
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code <- rlang::call2(type,!!!parameters,.ns = "FreesearchR")
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attr(out, "code") <- code
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attr(out,"code") <- code
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out
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}
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@ -737,17 +731,11 @@ line_break <- function(data, lineLength = 20, force = FALSE) {
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#'
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#' @param data list of ggplot2 objects
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#' @param tag_levels passed to patchwork::plot_annotation if given. Default is NULL
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#' @param title panel title
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#' @param ... ignored for argument overflow
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#'
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#' @returns list of ggplot2 objects
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#' @export
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#'
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wrap_plot_list <- function(data,
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tag_levels = NULL,
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title = NULL,
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axis.font.family=NULL,
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...) {
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wrap_plot_list <- function(data, tag_levels = NULL) {
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if (ggplot2::is_ggplot(data[[1]])) {
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if (length(data) > 1) {
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out <- data |>
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@ -761,35 +749,17 @@ wrap_plot_list <- function(data,
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}
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})() |>
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align_axes() |>
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patchwork::wrap_plots(
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guides = "collect",
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axes = "collect",
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axis_titles = "collect"
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)
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patchwork::wrap_plots(guides = "collect", axes = "collect", axis_titles = "collect")
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if (!is.null(tag_levels)) {
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out <- out + patchwork::plot_annotation(tag_levels = tag_levels)
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}
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if (!is.null(title)) {
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out <- out +
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patchwork::plot_annotation(
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title = title,
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theme = ggplot2::theme(plot.title = ggplot2::element_text(size = 25))
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)
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}
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} else {
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out <- data[[1]]
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out <- data
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}
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} else {
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cli::cli_abort("Can only wrap lists of {.cls ggplot} objects")
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}
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if (inherits(x = out, what = "patchwork")) {
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out &
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ggplot2::theme(axis.text = ggplot2::element_text(family = axis.font.family))
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} else {
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out +
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ggplot2::theme(axis.text = ggplot2::element_text(family = axis.font.family))
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}
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out
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}
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@ -1 +1 @@
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hosted_version <- function()'v25.6.4-250627'
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hosted_version <- function()'v25.6.3-250626'
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19
R/plot_box.R
19
R/plot_box.R
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@ -1,26 +1,16 @@
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#' Beautiful box plot(s)
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#'
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#' @param data data frame
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#' @param pri primary variable
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#' @param sec secondary variable
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#' @param ter tertiary variable
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#' @param ... passed on to wrap_plot_list
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#'
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#' @returns ggplot2 object
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#' @export
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#'
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#' @name data-plots
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#'
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#' @examples
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#' mtcars |> plot_box(pri = "mpg", sec = "gear")
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#' mtcars |> plot_box(pri = "mpg", sec="cyl")
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#' mtcars |> plot_box(pri = "mpg", sec = "cyl", ter = "gear")
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#' mtcars |>
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#' default_parsing() |>
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#' plot_box(pri = "mpg", sec = "cyl", ter = "gear")
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#' mtcars |>
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#' default_parsing() |>
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#' plot_box(pri = "mpg", sec = "cyl", ter = "gear",axis.font.family="mono")
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plot_box <- function(data, pri, sec, ter = NULL,...) {
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plot_box <- function(data, pri, sec, ter = NULL) {
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if (!is.null(ter)) {
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ds <- split(data, data[ter])
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} else {
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@ -35,7 +25,7 @@ plot_box <- function(data, pri, sec, ter = NULL,...) {
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)
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})
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wrap_plot_list(out,title=glue::glue("Grouped by {get_label(data,ter)}"),...)
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wrap_plot_list(out)
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}
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@ -51,7 +41,6 @@ plot_box <- function(data, pri, sec, ter = NULL,...) {
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#' @examples
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#' mtcars |> plot_box_single("mpg")
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#' mtcars |> plot_box_single("mpg","cyl")
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#' gtsummary::trial |> plot_box_single("age","trt")
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plot_box_single <- function(data, pri, sec=NULL, seed = 2103) {
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set.seed(seed)
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@ -67,8 +56,6 @@ plot_box_single <- function(data, pri, sec=NULL, seed = 2103) {
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ggplot2::geom_boxplot(linewidth = 1.8, outliers = FALSE) +
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## THis could be optional in future
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ggplot2::geom_jitter(color = "black", size = 2, alpha = 0.9, width = 0.1, height = .2) +
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ggplot2::xlab(get_label(data,pri))+
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ggplot2::ylab(get_label(data,sec)) +
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ggplot2::coord_flip() +
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viridis::scale_fill_viridis(discrete = discrete, option = "D") +
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# ggplot2::theme_void() +
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@ -92,7 +92,7 @@ plot_euler <- function(data, pri, sec, ter = NULL, seed = 2103) {
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})
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# names(out)
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wrap_plot_list(out,title=glue::glue("Grouped by {get_label(data,ter)}"))
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wrap_plot_list(out)
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# patchwork::wrap_plots(out, guides = "collect")
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}
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@ -24,6 +24,6 @@ plot_violin <- function(data, pri, sec, ter = NULL) {
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)
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})
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wrap_plot_list(out,title=glue::glue("Grouped by {get_label(data,ter)}"))
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wrap_plot_list(out)
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# patchwork::wrap_plots(out,guides = "collect")
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}
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BIN
R/sysdata.rda
BIN
R/sysdata.rda
Binary file not shown.
22
SESSION.md
22
SESSION.md
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@ -11,11 +11,11 @@
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|collate |en_US.UTF-8 |
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|ctype |en_US.UTF-8 |
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|tz |Europe/Copenhagen |
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|date |2025-06-27 |
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|date |2025-06-26 |
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|rstudio |2025.05.0+496 Mariposa Orchid (desktop) |
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|pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
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|quarto |1.7.30 @ /usr/local/bin/quarto |
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|FreesearchR |25.6.4.250627 |
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|FreesearchR |25.6.3.250626 |
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--------------------------------------------------------------------------------
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@ -26,6 +26,8 @@
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|apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) |
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|askpass |1.2.1 |2024-10-04 |CRAN (R 4.4.1) |
|
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|assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) |
|
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|attachment |0.4.5 |2025-03-14 |CRAN (R 4.4.1) |
|
||||
|attempt |0.3.1 |2020-05-03 |CRAN (R 4.4.1) |
|
||||
|backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) |
|
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|base64enc |0.1-3 |2015-07-28 |CRAN (R 4.4.1) |
|
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|bayestestR |0.15.3 |2025-04-28 |CRAN (R 4.4.1) |
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@ -43,6 +45,7 @@
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|cardx |0.2.4 |2025-04-12 |CRAN (R 4.4.1) |
|
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|caTools |1.18.3 |2024-09-04 |CRAN (R 4.4.1) |
|
||||
|cellranger |1.1.0 |2016-07-27 |CRAN (R 4.4.0) |
|
||||
|cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) |
|
||||
|checkmate |2.3.2 |2024-07-29 |CRAN (R 4.4.0) |
|
||||
|class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) |
|
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|classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) |
|
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@ -52,6 +55,7 @@
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|colorspace |2.1-1 |2024-07-26 |CRAN (R 4.4.1) |
|
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|commonmark |1.9.5 |2025-03-17 |CRAN (R 4.4.1) |
|
||||
|crayon |1.5.3 |2024-06-20 |CRAN (R 4.4.1) |
|
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|curl |6.2.2 |2025-03-24 |CRAN (R 4.4.1) |
|
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|data.table |1.17.0 |2025-02-22 |CRAN (R 4.4.1) |
|
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|datamods |1.5.3 |2024-10-02 |CRAN (R 4.4.1) |
|
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|datawizard |1.0.2 |2025-03-24 |CRAN (R 4.4.1) |
|
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|
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@ -60,6 +64,7 @@
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|devtools |2.4.5 |2022-10-11 |CRAN (R 4.4.0) |
|
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|DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) |
|
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|digest |0.6.37 |2024-08-19 |CRAN (R 4.4.1) |
|
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|dockerfiler |0.2.5 |2025-05-07 |CRAN (R 4.4.1) |
|
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|doParallel |1.0.17 |2022-02-07 |CRAN (R 4.4.0) |
|
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|dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) |
|
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|DT |0.33 |2024-04-04 |CRAN (R 4.4.0) |
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@ -82,7 +87,7 @@
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|foreach |1.5.2 |2022-02-02 |CRAN (R 4.4.0) |
|
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|foreign |0.8-90 |2025-03-31 |CRAN (R 4.4.1) |
|
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|Formula |1.2-5 |2023-02-24 |CRAN (R 4.4.1) |
|
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|FreesearchR |25.6.4 |NA |NA |
|
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|FreesearchR |25.6.3 |NA |NA |
|
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|fs |1.6.6 |2025-04-12 |CRAN (R 4.4.1) |
|
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|gdtools |0.4.2 |2025-03-27 |CRAN (R 4.4.1) |
|
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|generics |0.1.3 |2022-07-05 |CRAN (R 4.4.1) |
|
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@ -110,6 +115,7 @@
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|iterators |1.0.14 |2022-02-05 |CRAN (R 4.4.1) |
|
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|jquerylib |0.1.4 |2021-04-26 |CRAN (R 4.4.0) |
|
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|jsonlite |2.0.0 |2025-03-27 |CRAN (R 4.4.1) |
|
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|jsonvalidate |1.5.0 |2025-02-07 |CRAN (R 4.4.1) |
|
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|KernSmooth |2.23-26 |2025-01-01 |CRAN (R 4.4.1) |
|
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|keyring |1.3.2 |2023-12-11 |CRAN (R 4.4.0) |
|
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|knitr |1.50 |2025-03-16 |CRAN (R 4.4.1) |
|
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@ -117,9 +123,11 @@
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|later |1.4.2 |2025-04-08 |CRAN (R 4.4.1) |
|
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|lattice |0.22-7 |2025-04-02 |CRAN (R 4.4.1) |
|
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|lifecycle |1.0.4 |2023-11-07 |CRAN (R 4.4.1) |
|
||||
|litedown |0.7 |2025-04-08 |CRAN (R 4.4.1) |
|
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|lme4 |1.1-37 |2025-03-26 |CRAN (R 4.4.1) |
|
||||
|lubridate |1.9.4 |2024-12-08 |CRAN (R 4.4.1) |
|
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|magrittr |2.0.3 |2022-03-30 |CRAN (R 4.4.1) |
|
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|markdown |2.0 |2025-03-23 |CRAN (R 4.4.1) |
|
||||
|MASS |7.3-65 |2025-02-28 |CRAN (R 4.4.1) |
|
||||
|Matrix |1.7-3 |2025-03-11 |CRAN (R 4.4.1) |
|
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|memoise |2.0.1 |2021-11-26 |CRAN (R 4.4.0) |
|
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|
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@ -134,6 +142,7 @@
|
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|opdisDownsampling |1.0.1 |2024-04-15 |CRAN (R 4.4.0) |
|
||||
|openssl |2.3.2 |2025-02-03 |CRAN (R 4.4.1) |
|
||||
|openxlsx2 |1.15 |2025-04-25 |CRAN (R 4.4.1) |
|
||||
|pak |0.8.0.2 |2025-04-08 |CRAN (R 4.4.1) |
|
||||
|parameters |0.24.2 |2025-03-04 |CRAN (R 4.4.1) |
|
||||
|patchwork |1.3.0 |2024-09-16 |CRAN (R 4.4.1) |
|
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|pbmcapply |1.5.1 |2022-04-28 |CRAN (R 4.4.1) |
|
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|
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@ -162,6 +171,7 @@
|
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|R6 |2.6.1 |2025-02-15 |CRAN (R 4.4.1) |
|
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|ragg |1.4.0 |2025-04-10 |CRAN (R 4.4.1) |
|
||||
|rankinPlot |1.1.0 |2023-01-30 |CRAN (R 4.4.0) |
|
||||
|rappdirs |0.3.3 |2021-01-31 |CRAN (R 4.4.1) |
|
||||
|rbibutils |2.3 |2024-10-04 |CRAN (R 4.4.1) |
|
||||
|RColorBrewer |1.1-3 |2022-04-03 |CRAN (R 4.4.1) |
|
||||
|Rcpp |1.0.14 |2025-01-12 |CRAN (R 4.4.1) |
|
||||
|
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@ -192,6 +202,7 @@
|
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|see |0.11.0 |2025-03-11 |CRAN (R 4.4.1) |
|
||||
|sessioninfo |1.2.3 |2025-02-05 |CRAN (R 4.4.1) |
|
||||
|shiny |1.10.0 |2024-12-14 |CRAN (R 4.4.1) |
|
||||
|shiny2docker |0.0.2 |2025-02-09 |CRAN (R 4.4.1) |
|
||||
|shinybusy |0.3.3 |2024-03-09 |CRAN (R 4.4.0) |
|
||||
|shinyjs |2.1.0 |2021-12-23 |CRAN (R 4.4.0) |
|
||||
|shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) |
|
||||
|
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@ -213,11 +224,11 @@
|
|||
|tzdb |0.5.0 |2025-03-15 |CRAN (R 4.4.1) |
|
||||
|urlchecker |1.0.1 |2021-11-30 |CRAN (R 4.4.1) |
|
||||
|usethis |3.1.0 |2024-11-26 |CRAN (R 4.4.1) |
|
||||
|utf8 |1.2.4 |2023-10-22 |CRAN (R 4.4.1) |
|
||||
|uuid |1.2-1 |2024-07-29 |CRAN (R 4.4.1) |
|
||||
|V8 |6.0.3 |2025-03-26 |CRAN (R 4.4.1) |
|
||||
|vctrs |0.6.5 |2023-12-01 |CRAN (R 4.4.0) |
|
||||
|viridis |0.6.5 |2024-01-29 |CRAN (R 4.4.0) |
|
||||
|viridisLite |0.4.2 |2023-05-02 |CRAN (R 4.4.1) |
|
||||
|visdat |0.6.0 |NA |NA |
|
||||
|vroom |1.6.5 |2023-12-05 |CRAN (R 4.4.0) |
|
||||
|withr |3.0.2 |2024-10-28 |CRAN (R 4.4.1) |
|
||||
|writexl |1.5.4 |2025-04-15 |CRAN (R 4.4.1) |
|
||||
|
|
@ -225,4 +236,5 @@
|
|||
|xml2 |1.3.8 |2025-03-14 |CRAN (R 4.4.1) |
|
||||
|xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) |
|
||||
|yaml |2.3.10 |2024-07-26 |CRAN (R 4.4.1) |
|
||||
|yesno |0.1.3 |2024-07-26 |CRAN (R 4.4.1) |
|
||||
|zip |2.3.2 |2025-02-01 |CRAN (R 4.4.1) |
|
||||
|
|
|
|||
|
|
@ -49,7 +49,7 @@ library(rlang)
|
|||
#### Current file: /Users/au301842/FreesearchR/R//app_version.R
|
||||
########
|
||||
|
||||
app_version <- function()'25.6.4'
|
||||
app_version <- function()'25.6.3'
|
||||
|
||||
|
||||
########
|
||||
|
|
@ -1937,14 +1937,7 @@ data_visuals_server <- function(id,
|
|||
)
|
||||
|
||||
shiny::withProgress(message = "Drawing the plot. Hold tight for a moment..", {
|
||||
rv$plot <- rlang::exec(
|
||||
create_plot,
|
||||
!!!append_list(
|
||||
data(),
|
||||
parameters,
|
||||
"data"
|
||||
)
|
||||
)
|
||||
rv$plot <- rlang::exec(create_plot, !!!append_list(data(), parameters, "data"))
|
||||
})
|
||||
|
||||
rv$code <- glue::glue("FreesearchR::create_plot(df,{list2str(parameters)})")
|
||||
|
|
@ -2000,12 +1993,13 @@ data_visuals_server <- function(id,
|
|||
paste0("plot.", input$plot_type)
|
||||
}),
|
||||
content = function(file) {
|
||||
if (inherits(rv$plot, "patchwork")) {
|
||||
if (inherits(rv$plot,"patchwork")){
|
||||
plot <- rv$plot
|
||||
} else if (inherits(rv$plot, "ggplot")) {
|
||||
} else if (inherits(rv$plot,"ggplot")){
|
||||
plot <- rv$plot
|
||||
} else {
|
||||
}else {
|
||||
plot <- rv$plot[[1]]
|
||||
|
||||
}
|
||||
# browser()
|
||||
shiny::withProgress(message = "Drawing the plot. Hold on for a moment..", {
|
||||
|
|
@ -2265,12 +2259,12 @@ create_plot <- function(data, type, pri, sec, ter = NULL, ...) {
|
|||
|
||||
out <- do.call(
|
||||
type,
|
||||
modifyList(parameters, list(data = data))
|
||||
modifyList(parameters,list(data=data))
|
||||
)
|
||||
|
||||
code <- rlang::call2(type, !!!parameters, .ns = "FreesearchR")
|
||||
code <- rlang::call2(type,!!!parameters,.ns = "FreesearchR")
|
||||
|
||||
attr(out, "code") <- code
|
||||
attr(out,"code") <- code
|
||||
out
|
||||
}
|
||||
|
||||
|
|
@ -2337,17 +2331,11 @@ line_break <- function(data, lineLength = 20, force = FALSE) {
|
|||
#'
|
||||
#' @param data list of ggplot2 objects
|
||||
#' @param tag_levels passed to patchwork::plot_annotation if given. Default is NULL
|
||||
#' @param title panel title
|
||||
#' @param ... ignored for argument overflow
|
||||
#'
|
||||
#' @returns list of ggplot2 objects
|
||||
#' @export
|
||||
#'
|
||||
wrap_plot_list <- function(data,
|
||||
tag_levels = NULL,
|
||||
title = NULL,
|
||||
axis.font.family=NULL,
|
||||
...) {
|
||||
wrap_plot_list <- function(data, tag_levels = NULL) {
|
||||
if (ggplot2::is_ggplot(data[[1]])) {
|
||||
if (length(data) > 1) {
|
||||
out <- data |>
|
||||
|
|
@ -2361,35 +2349,17 @@ wrap_plot_list <- function(data,
|
|||
}
|
||||
})() |>
|
||||
align_axes() |>
|
||||
patchwork::wrap_plots(
|
||||
guides = "collect",
|
||||
axes = "collect",
|
||||
axis_titles = "collect"
|
||||
)
|
||||
patchwork::wrap_plots(guides = "collect", axes = "collect", axis_titles = "collect")
|
||||
if (!is.null(tag_levels)) {
|
||||
out <- out + patchwork::plot_annotation(tag_levels = tag_levels)
|
||||
}
|
||||
if (!is.null(title)) {
|
||||
out <- out +
|
||||
patchwork::plot_annotation(
|
||||
title = title,
|
||||
theme = ggplot2::theme(plot.title = ggplot2::element_text(size = 25))
|
||||
)
|
||||
}
|
||||
} else {
|
||||
out <- data[[1]]
|
||||
out <- data
|
||||
}
|
||||
} else {
|
||||
cli::cli_abort("Can only wrap lists of {.cls ggplot} objects")
|
||||
}
|
||||
|
||||
if (inherits(x = out, what = "patchwork")) {
|
||||
out &
|
||||
ggplot2::theme(axis.text = ggplot2::element_text(family = axis.font.family))
|
||||
} else {
|
||||
out +
|
||||
ggplot2::theme(axis.text = ggplot2::element_text(family = axis.font.family))
|
||||
}
|
||||
out
|
||||
}
|
||||
|
||||
|
||||
|
|
@ -4026,7 +3996,7 @@ simple_snake <- function(data){
|
|||
#### Current file: /Users/au301842/FreesearchR/R//hosted_version.R
|
||||
########
|
||||
|
||||
hosted_version <- function()'v25.6.4-250627'
|
||||
hosted_version <- function()'v25.6.3-250626'
|
||||
|
||||
|
||||
########
|
||||
|
|
@ -4835,27 +4805,17 @@ missing_demo_app()
|
|||
|
||||
#' Beautiful box plot(s)
|
||||
#'
|
||||
#' @param data data frame
|
||||
#' @param pri primary variable
|
||||
#' @param sec secondary variable
|
||||
#' @param ter tertiary variable
|
||||
#' @param ... passed on to wrap_plot_list
|
||||
#'
|
||||
#' @returns ggplot2 object
|
||||
#' @export
|
||||
#'
|
||||
#' @name data-plots
|
||||
#'
|
||||
#' @examples
|
||||
#' mtcars |> plot_box(pri = "mpg", sec = "gear")
|
||||
#' mtcars |> plot_box(pri = "mpg", sec="cyl")
|
||||
#' mtcars |> plot_box(pri = "mpg", sec = "cyl", ter = "gear")
|
||||
#' mtcars |>
|
||||
#' default_parsing() |>
|
||||
#' plot_box(pri = "mpg", sec = "cyl", ter = "gear")
|
||||
#' mtcars |>
|
||||
#' default_parsing() |>
|
||||
#' plot_box(pri = "mpg", sec = "cyl", ter = "gear",axis.font.family="mono")
|
||||
plot_box <- function(data, pri, sec, ter = NULL,...) {
|
||||
plot_box <- function(data, pri, sec, ter = NULL) {
|
||||
if (!is.null(ter)) {
|
||||
ds <- split(data, data[ter])
|
||||
} else {
|
||||
|
|
@ -4870,7 +4830,7 @@ plot_box <- function(data, pri, sec, ter = NULL,...) {
|
|||
)
|
||||
})
|
||||
|
||||
wrap_plot_list(out,title=glue::glue("Grouped by {get_label(data,ter)}"),...)
|
||||
wrap_plot_list(out)
|
||||
}
|
||||
|
||||
|
||||
|
|
@ -4886,7 +4846,6 @@ plot_box <- function(data, pri, sec, ter = NULL,...) {
|
|||
#' @examples
|
||||
#' mtcars |> plot_box_single("mpg")
|
||||
#' mtcars |> plot_box_single("mpg","cyl")
|
||||
#' gtsummary::trial |> plot_box_single("age","trt")
|
||||
plot_box_single <- function(data, pri, sec=NULL, seed = 2103) {
|
||||
set.seed(seed)
|
||||
|
||||
|
|
@ -4902,8 +4861,6 @@ plot_box_single <- function(data, pri, sec=NULL, seed = 2103) {
|
|||
ggplot2::geom_boxplot(linewidth = 1.8, outliers = FALSE) +
|
||||
## THis could be optional in future
|
||||
ggplot2::geom_jitter(color = "black", size = 2, alpha = 0.9, width = 0.1, height = .2) +
|
||||
ggplot2::xlab(get_label(data,pri))+
|
||||
ggplot2::ylab(get_label(data,sec)) +
|
||||
ggplot2::coord_flip() +
|
||||
viridis::scale_fill_viridis(discrete = discrete, option = "D") +
|
||||
# ggplot2::theme_void() +
|
||||
|
|
@ -5026,7 +4983,7 @@ plot_euler <- function(data, pri, sec, ter = NULL, seed = 2103) {
|
|||
})
|
||||
|
||||
# names(out)
|
||||
wrap_plot_list(out,title=glue::glue("Grouped by {get_label(data,ter)}"))
|
||||
wrap_plot_list(out)
|
||||
# patchwork::wrap_plots(out, guides = "collect")
|
||||
}
|
||||
|
||||
|
|
@ -5501,7 +5458,7 @@ plot_violin <- function(data, pri, sec, ter = NULL) {
|
|||
)
|
||||
})
|
||||
|
||||
wrap_plot_list(out,title=glue::glue("Grouped by {get_label(data,ter)}"))
|
||||
wrap_plot_list(out)
|
||||
# patchwork::wrap_plots(out,guides = "collect")
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -22,7 +22,7 @@ data_visuals_server(id, data, ...)
|
|||
|
||||
create_plot(data, type, pri, sec, ter = NULL, ...)
|
||||
|
||||
plot_box(data, pri, sec, ter = NULL, ...)
|
||||
plot_box(data, pri, sec, ter = NULL)
|
||||
|
||||
plot_box_single(data, pri, sec = NULL, seed = 2103)
|
||||
|
||||
|
|
@ -41,9 +41,9 @@ plot_violin(data, pri, sec, ter = NULL)
|
|||
\arguments{
|
||||
\item{id}{Module id. (Use 'ns("id")')}
|
||||
|
||||
\item{...}{passed on to wrap_plot_list}
|
||||
\item{...}{ignored for now}
|
||||
|
||||
\item{data}{data frame}
|
||||
\item{data}{data.frame}
|
||||
|
||||
\item{type}{plot type (derived from possible_plots() and matches custom function)}
|
||||
|
||||
|
|
@ -99,17 +99,12 @@ Beatiful violin plot
|
|||
}
|
||||
\examples{
|
||||
create_plot(mtcars, "plot_violin", "mpg", "cyl") |> attributes()
|
||||
mtcars |> plot_box(pri = "mpg", sec = "gear")
|
||||
mtcars |> plot_box(pri = "mpg", sec="cyl")
|
||||
mtcars |> plot_box(pri = "mpg", sec = "cyl", ter = "gear")
|
||||
mtcars |>
|
||||
default_parsing() |>
|
||||
plot_box(pri = "mpg", sec = "cyl", ter = "gear")
|
||||
mtcars |>
|
||||
default_parsing() |>
|
||||
plot_box(pri = "mpg", sec = "cyl", ter = "gear",axis.font.family="mono")
|
||||
mtcars |> plot_box_single("mpg")
|
||||
mtcars |> plot_box_single("mpg","cyl")
|
||||
gtsummary::trial |> plot_box_single("age","trt")
|
||||
mtcars |> plot_hbars(pri = "carb", sec = "cyl")
|
||||
mtcars |> plot_hbars(pri = "carb", sec = NULL)
|
||||
mtcars |>
|
||||
|
|
|
|||
|
|
@ -4,22 +4,12 @@
|
|||
\alias{wrap_plot_list}
|
||||
\title{Wrapping}
|
||||
\usage{
|
||||
wrap_plot_list(
|
||||
data,
|
||||
tag_levels = NULL,
|
||||
title = NULL,
|
||||
axis.font.family = NULL,
|
||||
...
|
||||
)
|
||||
wrap_plot_list(data, tag_levels = NULL)
|
||||
}
|
||||
\arguments{
|
||||
\item{data}{list of ggplot2 objects}
|
||||
|
||||
\item{tag_levels}{passed to patchwork::plot_annotation if given. Default is NULL}
|
||||
|
||||
\item{title}{panel title}
|
||||
|
||||
\item{...}{ignored for argument overflow}
|
||||
}
|
||||
\value{
|
||||
list of ggplot2 objects
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue