| ——————————– R environment ——————————— | -
|---|
| |setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-02-28 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.1.260228 | | +
| |setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-03-02 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.1.260302 | |
———————————– packages ———————————–
| package | @@ -134,46 +134,46 @@1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | -||
|---|---|---|---|---|---|
| checkmate | +|||||
| cffr | +1.2.1 | +2026-01-12 | +CRAN (R 4.5.2) | +||
| checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | -||
| class | +|||||
| class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | -||
| classInt | +|||||
| classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | -||
| cli | +|||||
| cli | 3.6.5 | 2025-04-23 | CRAN (R 4.5.0) | -||
| cluster | +|||||
| cluster | 2.1.8.2 | 2026-02-05 | CRAN (R 4.5.2) | -||
| codetools | +|||||
| codetools | 0.2-20 | 2024-03-31 | CRAN (R 4.5.2) | -||
| colorspace | +|||||
| colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | -||
| commonmark | +|||||
| commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | -||
| crayon | +|||||
| crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | -||
| crul | -1.6.0 | -NA | -NA | ||
| curl | 7.0.0 | 2025-08-19 | @@ -314,86 +314,78 @@0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | -
| gfonts | -0.2.0 | -NA | -NA | -||
| ggalluvial | +|||||
| ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | -||
| ggcorrplot | +|||||
| ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | -||
| ggforce | +|||||
| ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | -||
| ggplot2 | +|||||
| ggplot2 | 4.0.2 | 2026-02-03 | CRAN (R 4.5.2) | -||
| ggridges | +|||||
| ggridges | 0.5.7 | 2025-08-27 | CRAN (R 4.5.0) | -||
| ggstats | +|||||
| ggstats | 0.12.0 | 2025-12-22 | CRAN (R 4.5.2) | -||
| glue | +|||||
| glue | 1.8.0 | 2024-09-30 | CRAN (R 4.5.0) | -||
| gridExtra | +|||||
| gridExtra | 2.3 | 2017-09-09 | CRAN (R 4.5.0) | -||
| gt | +|||||
| gt | 1.3.0 | 2026-01-22 | CRAN (R 4.5.2) | -||
| gtable | +|||||
| gtable | 0.3.6 | 2024-10-25 | CRAN (R 4.5.0) | -||
| gtsummary | +|||||
| gtsummary | 2.5.0 | 2025-12-05 | CRAN (R 4.5.2) | -||
| haven | +|||||
| haven | 2.5.5 | 2025-05-30 | CRAN (R 4.5.0) | -||
| here | +|||||
| here | 1.0.2 | 2025-09-15 | CRAN (R 4.5.0) | -||
| Hmisc | +|||||
| Hmisc | 5.2-5 | 2026-01-09 | CRAN (R 4.5.2) | -||
| hms | +|||||
| hms | 1.1.4 | 2025-10-17 | CRAN (R 4.5.0) | -||
| htmlTable | +|||||
| htmlTable | 2.4.3 | 2024-07-21 | CRAN (R 4.5.0) | -||
| htmltools | +|||||
| htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | -||
| htmlwidgets | +|||||
| htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | -||
| httpcode | -0.3.0 | -NA | -NA | ||
| httpuv | 1.6.16 | 2025-04-16 | @@ -418,22 +410,22 @@2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | -
| KernSmooth | +|||||
| jsonvalidate | +1.5.0 | +2025-02-07 | +CRAN (R 4.5.0) | +||
| KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | -||
| keyring | +|||||
| keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | -||
| knitr | +|||||
| knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | -||
| labeling | -0.4.3 | -2023-08-29 | -CRAN (R 4.5.0) | ||
| later | 1.4.6 | 2026-02-13 | @@ -518,102 +510,102 @@0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | -
| pak | -0.9.2 | -2025-12-22 | -CRAN (R 4.5.2) | -||
| parameters | +|||||
| parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | -||
| patchwork | +|||||
| patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | -||
| pbmcapply | +|||||
| pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | -||
| performance | +|||||
| performance | 0.16.0 | 2026-02-04 | CRAN (R 4.5.2) | -||
| phosphoricons | +|||||
| phosphoricons | 0.2.1 | 2024-04-08 | CRAN (R 4.5.0) | -||
| pillar | +|||||
| pillar | 1.11.1 | 2025-09-17 | CRAN (R 4.5.0) | -||
| pkgbuild | +|||||
| pkgbuild | 1.4.8 | 2025-05-26 | CRAN (R 4.5.0) | -||
| pkgconfig | +|||||
| pkgconfig | 2.0.3 | 2019-09-22 | CRAN (R 4.5.0) | -||
| pkgload | +|||||
| pkgload | 1.5.0 | 2026-02-03 | CRAN (R 4.5.2) | -||
| plyr | +|||||
| plyr | 1.8.9 | 2023-10-02 | CRAN (R 4.5.0) | -||
| polyclip | +|||||
| polyclip | 1.10-7 | 2024-07-23 | CRAN (R 4.5.0) | -||
| pracma | +|||||
| pracma | 2.4.6 | 2025-10-22 | CRAN (R 4.5.0) | -||
| processx | +|||||
| processx | 3.8.6 | 2025-02-21 | CRAN (R 4.5.0) | -||
| promises | +|||||
| promises | 1.5.0 | 2025-11-01 | CRAN (R 4.5.0) | -||
| proxy | +|||||
| proxy | 0.4-29 | 2025-12-29 | CRAN (R 4.5.2) | -||
| ps | +|||||
| ps | 1.9.1 | 2025-04-12 | CRAN (R 4.5.0) | -||
| purrr | +|||||
| purrr | 1.2.1 | 2026-01-09 | CRAN (R 4.5.2) | -||
| qqconf | +|||||
| qqconf | 1.3.2 | 2023-04-14 | CRAN (R 4.5.0) | -||
| qqplotr | +|||||
| qqplotr | 0.0.7 | 2025-09-05 | CRAN (R 4.5.0) | -||
| quarto | +|||||
| quarto | 1.5.1 | 2025-09-04 | CRAN (R 4.5.0) | -||
| R6 | +|||||
| R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | -||
| ragg | +|||||
| ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | -||
| rankinPlot | +|||||
| rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | +||
| rappdirs | +0.3.4 | +2026-01-17 | +CRAN (R 4.5.2) | ||
| rbibutils | 2.4.1 | 2026-01-21 | @@ -810,26 +802,18 @@0.4.0 | 2025-04-03 | CRAN (R 4.5.0) | -
| triebeard | -0.4.1 | -NA | -NA | -||
| tweenr | +|||||
| tweenr | 2.0.3 | 2024-02-26 | CRAN (R 4.5.0) | -||
| twosamples | +|||||
| twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | -||
| tzdb | +|||||
| tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | -||
| urltools | -1.7.3.1 | -NA | -NA | ||
| usethis | 3.2.1 | 2025-09-06 | @@ -838,47 +822,51 @@1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | -
| vctrs | +|||||
| V8 | +8.0.1 | +2025-10-10 | +CRAN (R 4.5.0) | +||
| vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | -||
| viridis | +|||||
| viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | -||
| viridisLite | +|||||
| viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | -||
| vroom | +|||||
| vroom | 1.7.0 | 2026-01-27 | CRAN (R 4.5.2) | -||
| withr | +|||||
| withr | 3.0.2 | 2024-10-28 | CRAN (R 4.5.0) | -||
| writexl | +|||||
| writexl | 1.5.4 | 2025-04-15 | CRAN (R 4.5.0) | -||
| xfun | +|||||
| xfun | 0.56 | 2026-01-18 | CRAN (R 4.5.2) | -||
| xml2 | +|||||
| xml2 | 1.5.2 | 2026-01-17 | CRAN (R 4.5.2) | -||
| xtable | +|||||
| xtable | 1.8-4 | 2019-04-21 | CRAN (R 4.5.0) | -||
| yaml | +|||||
| yaml | 2.3.12 | 2025-12-10 | CRAN (R 4.5.2) | -||
| zip | +|||||
| zip | 2.3.3 | 2025-05-13 | CRAN (R 4.5.0) | diff --git a/SESSION.md b/SESSION.md index 4b3054d7..2dd10426 100644 --- a/SESSION.md +++ b/SESSION.md @@ -2,7 +2,7 @@ | ——————————– R environment ——————————— | |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-02-28 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.1.260228 \| | +| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-03-02 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.1.260302 \| | ## ———————————– packages ———————————– @@ -29,6 +29,7 @@ | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | +| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -38,7 +39,6 @@ | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | -| crul | 1.6.0 | NA | NA | | curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | @@ -74,7 +74,6 @@ | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | -| gfonts | 0.2.0 | NA | NA | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | @@ -93,17 +92,16 @@ | htmlTable | 2.4.3 | 2024-07-21 | CRAN (R 4.5.0) | | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | -| httpcode | 0.3.0 | NA | NA | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | +| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | -| labeling | 0.4.3 | 2023-08-29 | CRAN (R 4.5.0) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | @@ -125,7 +123,6 @@ | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | -| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -149,6 +146,7 @@ | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | +| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -198,13 +196,12 @@ | tidyselect | 1.2.1 | 2024-03-11 | CRAN (R 4.5.0) | | timechange | 0.4.0 | 2026-01-29 | CRAN (R 4.5.2) | | toastui | 0.4.0 | 2025-04-03 | CRAN (R 4.5.0) | -| triebeard | 0.4.1 | NA | NA | | tweenr | 2.0.3 | 2024-02-26 | CRAN (R 4.5.0) | | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | -| urltools | 1.7.3.1 | NA | NA | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | +| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index 490e225b..fbcb5659 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -73,7 +73,7 @@||
| date | -2026-02-28 | +2026-03-02 | |||
| rstudio | @@ -149,7 +149,7 @@ packages and the latest build info.|||||
| FreesearchR | -26.3.1.260228 | +26.3.1.260302 |

On visuals
- Source:vignettes/visuals.Rmd
+ Source: vignettes/visuals.Rmd
visuals.RmdCitation
-Source: DESCRIPTION
Source: DESCRIPTION
Damsbo A (2026).
FreesearchR: Easy data analysis for clinicians.
diff --git a/authors.md b/authors.md
index 55c51915..591fff5f 100644
--- a/authors.md
+++ b/authors.md
@@ -12,7 +12,7 @@
## Citation
Source:
-[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/main/DESCRIPTION)
+[`DESCRIPTION`](https://github.com/agdamsbo/FreesearchR/blob/v26.3.1/DESCRIPTION)
Damsbo A (2026). *FreesearchR: Easy data analysis for clinicians*. R
package version 26.3.1, FIX Include font files for static loading without dependency on Google. FIX NEW Updated text strings to better reflect environment data availability. New strings translated. Custom theme based on unityFreesearchR 26.3.1
-Include font files for static loading without dependency on Google. Kept webfonts from google as local fonts are not working for now.Usage
+ FreesearchR_theme(
+ ...,
+ version = 5,
+ primary = FreesearchR_colors("primary"),
+ secondary = FreesearchR_colors("secondary"),
+ bootswatch = "united",
+ base_font = bslib::font_google("Montserrat"),
+ heading_font = bslib::font_google("Public Sans", wght = "700"),
+ code_font = bslib::font_google("Open Sans"),
+ success = FreesearchR_colors("success"),
+ info = FreesearchR_colors("info"),
+ warning = FreesearchR_colors("warning"),
+ danger = FreesearchR_colors("danger")
+)Examples
+ if (interactive()) {
+bs_theme_preview(FreesearchR_theme)
+}
+
+
Convert class grid column to icon
- Source: R/data-summary.R
+ Source: R/data-summary.R
add_class_icon.Rd
Convert string of arguments to list of arguments
- Source: R/helpers.R
+ Source: R/helpers.R
argsstring2list.Rd
Print a flexible baseline characteristics table
- Source: R/baseline_table.R
+ Source: R/baseline_table.R
baseline_table.RdExamples
mtcars |> baseline_table()
-Characteristic
N = 321
@@ -113,7 +113,7 @@
1 Median (Q1, Q3); n (%)
Characteristic
3
diff --git a/reference/class_icons.html b/reference/class_icons.html
index 3528cf63..e6618a16 100644
--- a/reference/class_icons.html
+++ b/reference/class_icons.html
@@ -38,7 +38,7 @@

Extract and clean axis ranges
- Source: R/data_plots.R
+ Source: R/data_plots.R
clean_common_axis.Rd
Attempts at applying uniform date format
- Source: R/update-variables-ext.R
+ Source: R/update-variables-ext.R
clean_date.Rd
gsub wrapper for piping with default values for separator substituting
- Source: R/update-variables-ext.R
+ Source: R/update-variables-ext.R
clean_sep.Rd
Substitue spaces/tabs with single space excluding text within quotes
- Source: R/helpers.R
+ Source: R/helpers.R
collapse_spaces.Rd
A selectizeInput customized for data frames with column labels
- Source: R/custom_SelectInput.R
+ Source: R/custom_SelectInput.R
columnSelectInput.Rd
Pairwise comparison of missings across covariables
- Source: R/missings-module.R
+ Source: R/missings-module.R
compare_missings.Rd
Correlation pairs validation
- Source: R/validation.R
+ Source: R/validation.R
corr_pairs_validate.Rd
Determine significant correlations in the data set
- Source: R/correlations-module.R
+ Source: R/correlations-module.R
correlation_pairs.Rd
Create a baseline table
- Source: R/baseline_table.R
+ Source: R/baseline_table.R
create_baseline.RdExamples
mtcars |> create_baseline(by.var = "gear", add.p = "yes" == "yes")
-Characteristic
3
@@ -188,7 +188,7 @@ N = 51 Kruskal-Wallis rank sum test; Fisher’s exact test
Characteristic
3
@@ -321,7 +321,7 @@ N = 5Characteristic
3
@@ -402,7 +402,7 @@ N = 51 (20)1 Median (IQR); n (%)
Characteristic
FALSE
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html
index f73a9480..999a81d9 100644
--- a/reference/create_log_tics.html
+++ b/reference/create_log_tics.html
@@ -38,7 +38,7 @@

Create summetric log ticks
- Source: R/regression_plot.R
+ Source: R/regression_plot.R
create_log_tics.Rd
