diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index a2710b27..0dab4734 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -37,7 +37,7 @@

Contributor Covenant Code of Conduct

- Source: CODE_OF_CONDUCT.md + Source: CODE_OF_CONDUCT.md
diff --git a/LICENSE.html b/LICENSE.html index 5c1d9ec2..5bb420f4 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -37,7 +37,7 @@

GNU Affero General Public License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/QA.html b/QA.html index 2d4e2ed2..57c33983 100644 --- a/QA.html +++ b/QA.html @@ -37,7 +37,7 @@

Questions and answers

- Source: QA.md + Source: QA.md
diff --git a/ROADMAP.html b/ROADMAP.html index cf6ff442..b632a630 100644 --- a/ROADMAP.html +++ b/ROADMAP.html @@ -37,7 +37,7 @@

Project roadmap

- Source: ROADMAP.md + Source: ROADMAP.md
diff --git a/SESSION.html b/SESSION.html index f79a6463..2d23ef60 100644 --- a/SESSION.html +++ b/SESSION.html @@ -37,7 +37,7 @@

NA

- Source: SESSION.md + Source: SESSION.md
@@ -61,14 +61,6 @@ 0.2.1 2019-03-21 CRAN (R 4.4.1) -attachment -0.4.5 -2025-03-14 -CRAN (R 4.4.1) -attempt -0.3.1 -2020-05-03 -CRAN (R 4.4.1) backports 1.5.0 2024-05-23 @@ -213,322 +205,314 @@ 0.6.37 2024-08-19 CRAN (R 4.4.1) -dockerfiler -0.2.5 -2025-05-07 -CRAN (R 4.4.1) -doParallel +doParallel 1.0.17 2022-02-07 CRAN (R 4.4.0) -dplyr +dplyr 1.1.4 2023-11-17 CRAN (R 4.4.0) -DT +DT 0.33 2024-04-04 CRAN (R 4.4.0) -e1071 +e1071 1.7-16 2024-09-16 CRAN (R 4.4.1) -easystats +easystats 0.7.4 2025-02-06 CRAN (R 4.4.1) -ellipsis +ellipsis 0.3.2 2021-04-29 CRAN (R 4.4.1) -emmeans +emmeans 1.11.1 2025-05-04 CRAN (R 4.4.1) -esquisse +esquisse 2.1.0 2025-02-21 CRAN (R 4.4.1) -estimability +estimability 1.5.1 2024-05-12 CRAN (R 4.4.0) -eulerr +eulerr 7.0.2 2024-03-28 CRAN (R 4.4.0) -evaluate +evaluate 1.0.3 2025-01-10 CRAN (R 4.4.1) -farver +farver 2.1.2 2024-05-13 CRAN (R 4.4.1) -fastmap +fastmap 1.2.0 2024-05-15 CRAN (R 4.4.1) -flextable +flextable 0.9.7 2024-10-27 CRAN (R 4.4.1) -fontawesome +fontawesome 0.5.3 2024-11-16 CRAN (R 4.4.1) -fontBitstreamVera +fontBitstreamVera 0.1.1 2017-02-01 CRAN (R 4.4.1) -fontLiberation +fontLiberation 0.1.0 2016-10-15 CRAN (R 4.4.1) -fontquiver +fontquiver 0.2.1 2017-02-01 CRAN (R 4.4.0) -forcats +forcats 1.0.0 2023-01-29 CRAN (R 4.4.0) -foreach +foreach 1.5.2 2022-02-02 CRAN (R 4.4.0) -foreign +foreign 0.8-90 2025-03-31 CRAN (R 4.4.1) -Formula +Formula 1.2-5 2023-02-24 CRAN (R 4.4.1) -FreesearchR +FreesearchR 25.6.3 NA NA -fs +fs 1.6.6 2025-04-12 CRAN (R 4.4.1) -gdtools +gdtools 0.4.2 2025-03-27 CRAN (R 4.4.1) -generics +generics 0.1.3 2022-07-05 CRAN (R 4.4.1) -ggalluvial +ggalluvial 0.12.5 2023-02-22 CRAN (R 4.4.0) -ggcorrplot +ggcorrplot 0.1.4.1 2023-09-05 CRAN (R 4.4.0) -ggforce +ggforce 0.4.2 2024-02-19 CRAN (R 4.4.0) -ggplot2 +ggplot2 3.5.2 2025-04-09 CRAN (R 4.4.1) -ggridges +ggridges 0.5.6 2024-01-23 CRAN (R 4.4.0) -ggstats +ggstats 0.9.0 2025-03-10 CRAN (R 4.4.1) -glue +glue 1.8.0 2024-09-30 CRAN (R 4.4.1) -gridExtra +gridExtra 2.3 2017-09-09 CRAN (R 4.4.1) -gt +gt 1.0.0 2025-04-05 CRAN (R 4.4.1) -gtable +gtable 0.3.6 2024-10-25 CRAN (R 4.4.1) -gtsummary +gtsummary 2.2.0 2025-04-14 CRAN (R 4.4.1) -haven +haven 2.5.4 2023-11-30 CRAN (R 4.4.0) -here +here 1.0.1 2020-12-13 CRAN (R 4.4.1) -Hmisc +Hmisc 5.2-3 2025-03-16 CRAN (R 4.4.1) -hms +hms 1.1.3 2023-03-21 CRAN (R 4.4.0) -htmlTable +htmlTable 2.4.3 2024-07-21 CRAN (R 4.4.0) -htmltools +htmltools 0.5.8.1 2024-04-04 CRAN (R 4.4.1) -htmlwidgets +htmlwidgets 1.6.4 2023-12-06 CRAN (R 4.4.0) -httpuv +httpuv 1.6.16 2025-04-16 CRAN (R 4.4.1) -IDEAFilter +IDEAFilter 0.2.0 2024-04-15 CRAN (R 4.4.0) -insight +insight 1.2.0 2025-04-22 CRAN (R 4.4.1) -iterators +iterators 1.0.14 2022-02-05 CRAN (R 4.4.1) -jquerylib +jquerylib 0.1.4 2021-04-26 CRAN (R 4.4.0) -jsonlite +jsonlite 2.0.0 2025-03-27 CRAN (R 4.4.1) -jsonvalidate +jsonvalidate 1.5.0 2025-02-07 CRAN (R 4.4.1) -KernSmooth +KernSmooth 2.23-26 2025-01-01 CRAN (R 4.4.1) -keyring +keyring 1.3.2 2023-12-11 CRAN (R 4.4.0) -knitr +knitr 1.50 2025-03-16 CRAN (R 4.4.1) -labeling +labeling 0.4.3 2023-08-29 CRAN (R 4.4.1) -later +later 1.4.2 2025-04-08 CRAN (R 4.4.1) -lattice +lattice 0.22-7 2025-04-02 CRAN (R 4.4.1) -lifecycle +lifecycle 1.0.4 2023-11-07 CRAN (R 4.4.1) -litedown +litedown 0.7 2025-04-08 CRAN (R 4.4.1) -lme4 +lme4 1.1-37 2025-03-26 CRAN (R 4.4.1) -lubridate +lubridate 1.9.4 2024-12-08 CRAN (R 4.4.1) -magrittr +magrittr 2.0.3 2022-03-30 CRAN (R 4.4.1) -markdown +markdown 2.0 2025-03-23 CRAN (R 4.4.1) -MASS +MASS 7.3-65 2025-02-28 CRAN (R 4.4.1) -Matrix +Matrix 1.7-3 2025-03-11 CRAN (R 4.4.1) -memoise +memoise 2.0.1 2021-11-26 CRAN (R 4.4.0) -mime +mime 0.13 2025-03-17 CRAN (R 4.4.1) -miniUI +miniUI 0.1.2 2025-04-17 CRAN (R 4.4.1) -minqa +minqa 1.2.8 2024-08-17 CRAN (R 4.4.1) -mvtnorm +mvtnorm 1.3-3 2025-01-10 CRAN (R 4.4.1) -nlme +nlme 3.1-168 2025-03-31 CRAN (R 4.4.1) -nloptr +nloptr 2.2.1 2025-03-17 CRAN (R 4.4.1) -nnet +nnet 7.3-20 2025-01-01 CRAN (R 4.4.1) -officer +officer 0.6.8 2025-03-23 CRAN (R 4.4.1) -opdisDownsampling +opdisDownsampling 1.0.1 2024-04-15 CRAN (R 4.4.0) -openssl +openssl 2.3.2 2025-02-03 CRAN (R 4.4.1) -openxlsx2 +openxlsx2 1.15 2025-04-25 CRAN (R 4.4.1) -pak -0.8.0.2 -2025-04-08 -CRAN (R 4.4.1) parameters 0.24.2 2025-03-04 @@ -765,146 +749,138 @@ 1.10.0 2024-12-14 CRAN (R 4.4.1) -shiny2docker -0.0.2 -2025-02-09 -CRAN (R 4.4.1) -shinybusy +shinybusy 0.3.3 2024-03-09 CRAN (R 4.4.0) -shinyjs +shinyjs 2.1.0 2021-12-23 CRAN (R 4.4.0) -shinyTime +shinyTime 1.0.3 2022-08-19 CRAN (R 4.4.0) -shinyWidgets +shinyWidgets 0.9.0 2025-02-21 CRAN (R 4.4.1) -stringi +stringi 1.8.7 2025-03-27 CRAN (R 4.4.1) -stringr +stringr 1.5.1 2023-11-14 CRAN (R 4.4.0) -styler +styler 1.10.3 2024-04-07 CRAN (R 4.4.0) -systemfonts +systemfonts 1.2.2 2025-04-04 CRAN (R 4.4.1) -testthat +testthat 3.2.3 2025-01-13 CRAN (R 4.4.1) -textshaping +textshaping 1.0.0 2025-01-20 CRAN (R 4.4.1) -thematic +thematic 0.1.6 2024-07-29 CRAN (R 4.4.0) -tibble +tibble 3.2.1 2023-03-20 CRAN (R 4.4.0) -tidyr +tidyr 1.3.1 2024-01-24 CRAN (R 4.4.1) -tidyselect +tidyselect 1.2.1 2024-03-11 CRAN (R 4.4.0) -timechange +timechange 0.3.0 2024-01-18 CRAN (R 4.4.1) -toastui +toastui 0.4.0 2025-04-03 CRAN (R 4.4.1) -tweenr +tweenr 2.0.3 2024-02-26 CRAN (R 4.4.0) -twosamples +twosamples 2.0.1 2023-06-23 CRAN (R 4.4.1) -tzdb +tzdb 0.5.0 2025-03-15 CRAN (R 4.4.1) -urlchecker +urlchecker 1.0.1 2021-11-30 CRAN (R 4.4.1) -usethis +usethis 3.1.0 2024-11-26 CRAN (R 4.4.1) -uuid +uuid 1.2-1 2024-07-29 CRAN (R 4.4.1) -V8 +V8 6.0.3 2025-03-26 CRAN (R 4.4.1) -vctrs +vctrs 0.6.5 2023-12-01 CRAN (R 4.4.0) -viridisLite +viridisLite 0.4.2 2023-05-02 CRAN (R 4.4.1) -visdat +visdat 0.6.0 NA NA -vroom +vroom 1.6.5 2023-12-05 CRAN (R 4.4.0) -withr +withr 3.0.2 2024-10-28 CRAN (R 4.4.1) -writexl +writexl 1.5.4 2025-04-15 CRAN (R 4.4.1) -xfun +xfun 0.52 2025-04-02 CRAN (R 4.4.1) -xml2 +xml2 1.3.8 2025-03-14 CRAN (R 4.4.1) -xtable +xtable 1.8-4 2019-04-21 CRAN (R 4.4.1) -yaml +yaml 2.3.10 2024-07-26 CRAN (R 4.4.1) -yesno -0.1.3 -2024-07-26 -CRAN (R 4.4.1) zip 2.3.2 2025-02-01 diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html index 67755932..c7018844 100644 --- a/articles/FreesearchR.html +++ b/articles/FreesearchR.html @@ -72,7 +72,7 @@

FreesearchR

- Source: vignettes/FreesearchR.Rmd + Source: vignettes/FreesearchR.Rmd
FreesearchR.Rmd
diff --git a/articles/data-types.html b/articles/data-types.html index 259f9b07..2694b7ea 100644 --- a/articles/data-types.html +++ b/articles/data-types.html @@ -72,7 +72,7 @@

Data types

- Source: vignettes/data-types.Rmd + Source: vignettes/data-types.Rmd
data-types.Rmd
diff --git a/articles/session.html b/articles/session.html index 874d6aca..25524923 100644 --- a/articles/session.html +++ b/articles/session.html @@ -72,7 +72,7 @@

Session info

- Source: vignettes/session.Rmd + Source: vignettes/session.Rmd
session.Rmd
@@ -185,18 +185,6 @@ packages and the latest build info.

CRAN (R 4.4.1) -attachment -0.4.5 -2025-03-14 -CRAN (R 4.4.1) - - -attempt -0.3.1 -2020-05-03 -CRAN (R 4.4.1) - - backports 1.5.0 2024-05-23 @@ -413,479 +401,467 @@ packages and the latest build info.

CRAN (R 4.4.1) -dockerfiler -0.2.5 -2025-05-07 -CRAN (R 4.4.1) - - doParallel 1.0.17 2022-02-07 CRAN (R 4.4.0) - + dplyr 1.1.4 2023-11-17 CRAN (R 4.4.0) - + DT 0.33 2024-04-04 CRAN (R 4.4.0) - + e1071 1.7-16 2024-09-16 CRAN (R 4.4.1) - + easystats 0.7.4 2025-02-06 CRAN (R 4.4.1) - + ellipsis 0.3.2 2021-04-29 CRAN (R 4.4.1) - + emmeans 1.11.1 2025-05-04 CRAN (R 4.4.1) - + esquisse 2.1.0 2025-02-21 CRAN (R 4.4.1) - + estimability 1.5.1 2024-05-12 CRAN (R 4.4.0) - + eulerr 7.0.2 2024-03-28 CRAN (R 4.4.0) - + evaluate 1.0.3 2025-01-10 CRAN (R 4.4.1) - + farver 2.1.2 2024-05-13 CRAN (R 4.4.1) - + fastmap 1.2.0 2024-05-15 CRAN (R 4.4.1) - + flextable 0.9.7 2024-10-27 CRAN (R 4.4.1) - + fontawesome 0.5.3 2024-11-16 CRAN (R 4.4.1) - + fontBitstreamVera 0.1.1 2017-02-01 CRAN (R 4.4.1) - + fontLiberation 0.1.0 2016-10-15 CRAN (R 4.4.1) - + fontquiver 0.2.1 2017-02-01 CRAN (R 4.4.0) - + forcats 1.0.0 2023-01-29 CRAN (R 4.4.0) - + foreach 1.5.2 2022-02-02 CRAN (R 4.4.0) - + foreign 0.8-90 2025-03-31 CRAN (R 4.4.1) - + Formula 1.2-5 2023-02-24 CRAN (R 4.4.1) - + FreesearchR 25.6.3 NA NA - + fs 1.6.6 2025-04-12 CRAN (R 4.4.1) - + gdtools 0.4.2 2025-03-27 CRAN (R 4.4.1) - + generics 0.1.3 2022-07-05 CRAN (R 4.4.1) - + ggalluvial 0.12.5 2023-02-22 CRAN (R 4.4.0) - + ggcorrplot 0.1.4.1 2023-09-05 CRAN (R 4.4.0) - + ggforce 0.4.2 2024-02-19 CRAN (R 4.4.0) - + ggplot2 3.5.2 2025-04-09 CRAN (R 4.4.1) - + ggridges 0.5.6 2024-01-23 CRAN (R 4.4.0) - + ggstats 0.9.0 2025-03-10 CRAN (R 4.4.1) - + glue 1.8.0 2024-09-30 CRAN (R 4.4.1) - + gridExtra 2.3 2017-09-09 CRAN (R 4.4.1) - + gt 1.0.0 2025-04-05 CRAN (R 4.4.1) - + gtable 0.3.6 2024-10-25 CRAN (R 4.4.1) - + gtsummary 2.2.0 2025-04-14 CRAN (R 4.4.1) - + haven 2.5.4 2023-11-30 CRAN (R 4.4.0) - + here 1.0.1 2020-12-13 CRAN (R 4.4.1) - + Hmisc 5.2-3 2025-03-16 CRAN (R 4.4.1) - + hms 1.1.3 2023-03-21 CRAN (R 4.4.0) - + htmlTable 2.4.3 2024-07-21 CRAN (R 4.4.0) - + htmltools 0.5.8.1 2024-04-04 CRAN (R 4.4.1) - + htmlwidgets 1.6.4 2023-12-06 CRAN (R 4.4.0) - + httpuv 1.6.16 2025-04-16 CRAN (R 4.4.1) - + IDEAFilter 0.2.0 2024-04-15 CRAN (R 4.4.0) - + insight 1.2.0 2025-04-22 CRAN (R 4.4.1) - + iterators 1.0.14 2022-02-05 CRAN (R 4.4.1) - + jquerylib 0.1.4 2021-04-26 CRAN (R 4.4.0) - + jsonlite 2.0.0 2025-03-27 CRAN (R 4.4.1) - + jsonvalidate 1.5.0 2025-02-07 CRAN (R 4.4.1) - + KernSmooth 2.23-26 2025-01-01 CRAN (R 4.4.1) - + keyring 1.3.2 2023-12-11 CRAN (R 4.4.0) - + knitr 1.50 2025-03-16 CRAN (R 4.4.1) - + labeling 0.4.3 2023-08-29 CRAN (R 4.4.1) - + later 1.4.2 2025-04-08 CRAN (R 4.4.1) - + lattice 0.22-7 2025-04-02 CRAN (R 4.4.1) - + lifecycle 1.0.4 2023-11-07 CRAN (R 4.4.1) - + litedown 0.7 2025-04-08 CRAN (R 4.4.1) - + lme4 1.1-37 2025-03-26 CRAN (R 4.4.1) - + lubridate 1.9.4 2024-12-08 CRAN (R 4.4.1) - + magrittr 2.0.3 2022-03-30 CRAN (R 4.4.1) - + markdown 2.0 2025-03-23 CRAN (R 4.4.1) - + MASS 7.3-65 2025-02-28 CRAN (R 4.4.1) - + Matrix 1.7-3 2025-03-11 CRAN (R 4.4.1) - + memoise 2.0.1 2021-11-26 CRAN (R 4.4.0) - + mime 0.13 2025-03-17 CRAN (R 4.4.1) - + miniUI 0.1.2 2025-04-17 CRAN (R 4.4.1) - + minqa 1.2.8 2024-08-17 CRAN (R 4.4.1) - + mvtnorm 1.3-3 2025-01-10 CRAN (R 4.4.1) - + nlme 3.1-168 2025-03-31 CRAN (R 4.4.1) - + nloptr 2.2.1 2025-03-17 CRAN (R 4.4.1) - + nnet 7.3-20 2025-01-01 CRAN (R 4.4.1) - + officer 0.6.8 2025-03-23 CRAN (R 4.4.1) - + opdisDownsampling 1.0.1 2024-04-15 CRAN (R 4.4.0) - + openssl 2.3.2 2025-02-03 CRAN (R 4.4.1) - + openxlsx2 1.15 2025-04-25 CRAN (R 4.4.1) - -pak -0.8.0.2 -2025-04-08 -CRAN (R 4.4.1) - parameters 0.24.2 @@ -1241,215 +1217,203 @@ packages and the latest build info.

CRAN (R 4.4.1) -shiny2docker -0.0.2 -2025-02-09 -CRAN (R 4.4.1) - - shinybusy 0.3.3 2024-03-09 CRAN (R 4.4.0) - + shinyjs 2.1.0 2021-12-23 CRAN (R 4.4.0) - + shinyTime 1.0.3 2022-08-19 CRAN (R 4.4.0) - + shinyWidgets 0.9.0 2025-02-21 CRAN (R 4.4.1) - + stringi 1.8.7 2025-03-27 CRAN (R 4.4.1) - + stringr 1.5.1 2023-11-14 CRAN (R 4.4.0) - + styler 1.10.3 2024-04-07 CRAN (R 4.4.0) - + systemfonts 1.2.2 2025-04-04 CRAN (R 4.4.1) - + testthat 3.2.3 2025-01-13 CRAN (R 4.4.1) - + textshaping 1.0.0 2025-01-20 CRAN (R 4.4.1) - + thematic 0.1.6 2024-07-29 CRAN (R 4.4.0) - + tibble 3.2.1 2023-03-20 CRAN (R 4.4.0) - + tidyr 1.3.1 2024-01-24 CRAN (R 4.4.1) - + tidyselect 1.2.1 2024-03-11 CRAN (R 4.4.0) - + timechange 0.3.0 2024-01-18 CRAN (R 4.4.1) - + toastui 0.4.0 2025-04-03 CRAN (R 4.4.1) - + tweenr 2.0.3 2024-02-26 CRAN (R 4.4.0) - + twosamples 2.0.1 2023-06-23 CRAN (R 4.4.1) - + tzdb 0.5.0 2025-03-15 CRAN (R 4.4.1) - + urlchecker 1.0.1 2021-11-30 CRAN (R 4.4.1) - + usethis 3.1.0 2024-11-26 CRAN (R 4.4.1) - + uuid 1.2-1 2024-07-29 CRAN (R 4.4.1) - + V8 6.0.3 2025-03-26 CRAN (R 4.4.1) - + vctrs 0.6.5 2023-12-01 CRAN (R 4.4.0) - + viridisLite 0.4.2 2023-05-02 CRAN (R 4.4.1) - + visdat 0.6.0 NA NA - + vroom 1.6.5 2023-12-05 CRAN (R 4.4.0) - + withr 3.0.2 2024-10-28 CRAN (R 4.4.1) - + writexl 1.5.4 2025-04-15 CRAN (R 4.4.1) - + xfun 0.52 2025-04-02 CRAN (R 4.4.1) - + xml2 1.3.8 2025-03-14 CRAN (R 4.4.1) - + xtable 1.8-4 2019-04-21 CRAN (R 4.4.1) - + yaml 2.3.10 2024-07-26 CRAN (R 4.4.1) - -yesno -0.1.3 -2024-07-26 -CRAN (R 4.4.1) - zip 2.3.2 diff --git a/articles/visuals.html b/articles/visuals.html index eeaebd4f..81940eb9 100644 --- a/articles/visuals.html +++ b/articles/visuals.html @@ -72,7 +72,7 @@

On visuals

- Source: vignettes/visuals.Rmd + Source: vignettes/visuals.Rmd
visuals.Rmd
diff --git a/authors.html b/authors.html index 7ca3bd78..e1c84686 100644 --- a/authors.html +++ b/authors.html @@ -58,7 +58,7 @@

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Damsbo A (2025). FreesearchR: A free and open-source browser based data analysis tool for researchers with publication ready output. diff --git a/index.html b/index.html index 3d2889d5..385dd623 100644 --- a/index.html +++ b/index.html @@ -94,12 +94,7 @@

Run locally on your own machine

-

The FreesearchR app can also run on your own machine with no data transmitted anywhere. Blow are the available options.

-
-

Run from R (or RStduio) -

-

Working with data in R, FreesearchR is a quick and easy tool to get overview and perform the first explorative analyses to get you going.

-

Any data available in the your R session will be available to the FreesearchR app. Just follow the below steps to get going:

+

The FreesearchR app can also run on your own machine with no data transmitted anywhere. Any data.frame available in the global environment will be accessible from the interface. Just follow the below steps:

  1. Requirement: You need to have R installed and possibly an editor like RStudio.

  2. @@ -114,19 +109,6 @@
-
-

Running with docker compose -

-

For advanced users, wanting to deploy the FreesearchR app to run anywhere, a docker image is available.

-

Below is the minimal docker_compose.yml file:

-
services:
-  freesearchr:
-    image: ghcr.io/agdamsbo/freesearchr:latest
-    ports:
-      - '3838:3838'
-    restart: on-failure
-
-

Code of Conduct

diff --git a/news/index.html b/news/index.html index 4e1f3df9..732e17d8 100644 --- a/news/index.html +++ b/news/index.html @@ -37,7 +37,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/pkgdown.yml b/pkgdown.yml index 5a14f4e7..9d111a47 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -6,7 +6,7 @@ articles: FreesearchR: FreesearchR.html session: session.html visuals: visuals.html -last_built: 2025-06-26T11:06Z +last_built: 2025-06-26T08:59Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/FreesearchR_palette.html b/reference/FreesearchR_palette.html index 56cfb6d0..b9e04c29 100644 --- a/reference/FreesearchR_palette.html +++ b/reference/FreesearchR_palette.html @@ -37,7 +37,7 @@

Use the FreesearchR colors

- Source: R/theme.R + Source: R/theme.R
FreesearchR_palette.Rd
diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html index 7098d4cc..5de8257d 100644 --- a/reference/add_class_icon.html +++ b/reference/add_class_icon.html @@ -37,7 +37,7 @@

Convert class grid column to icon

- Source: R/data-summary.R + Source: R/data-summary.R
add_class_icon.Rd
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html index c7a5af8b..a597f6e4 100644 --- a/reference/add_sparkline.html +++ b/reference/add_sparkline.html @@ -37,7 +37,7 @@

Add sparkline to datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
add_sparkline.Rd
diff --git a/reference/align_axes.html b/reference/align_axes.html index b7a8ac89..14e88538 100644 --- a/reference/align_axes.html +++ b/reference/align_axes.html @@ -37,7 +37,7 @@

Aligns axes between plots

- Source: R/data_plots.R + Source: R/data_plots.R
align_axes.Rd
diff --git a/reference/all_but.html b/reference/all_but.html index f6178c5c..bbe634db 100644 --- a/reference/all_but.html +++ b/reference/all_but.html @@ -37,7 +37,7 @@

Select all from vector but

- Source: R/data_plots.R + Source: R/data_plots.R
all_but.Rd
diff --git a/reference/append_column.html b/reference/append_column.html index 4ff534ed..c66f7320 100644 --- a/reference/append_column.html +++ b/reference/append_column.html @@ -37,7 +37,7 @@

Append a column to a data.frame

- Source: R/helpers.R + Source: R/helpers.R
append_column.Rd
diff --git a/reference/append_list.html b/reference/append_list.html index 8757bf07..bfac0202 100644 --- a/reference/append_list.html +++ b/reference/append_list.html @@ -37,7 +37,7 @@

Append list with named index

- Source: R/helpers.R + Source: R/helpers.R
append_list.Rd
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html index f4f1b1d7..adbe28db 100644 --- a/reference/argsstring2list.html +++ b/reference/argsstring2list.html @@ -37,7 +37,7 @@

Convert string of arguments to list of arguments

- Source: R/helpers.R + Source: R/helpers.R
argsstring2list.Rd
diff --git a/reference/baseline_table.html b/reference/baseline_table.html index 935ed282..b0a20317 100644 --- a/reference/baseline_table.html +++ b/reference/baseline_table.html @@ -37,7 +37,7 @@

Print a flexible baseline characteristics table

- Source: R/baseline_table.R + Source: R/baseline_table.R
baseline_table.Rd
diff --git a/reference/class_icons.html b/reference/class_icons.html index fc696f0d..98c0dc89 100644 --- a/reference/class_icons.html +++ b/reference/class_icons.html @@ -37,7 +37,7 @@

Get data class icons

- Source: R/data-summary.R + Source: R/data-summary.R
class_icons.Rd
diff --git a/reference/clean_common_axis.html b/reference/clean_common_axis.html index cada065b..cf763d56 100644 --- a/reference/clean_common_axis.html +++ b/reference/clean_common_axis.html @@ -37,7 +37,7 @@

Extract and clean axis ranges

- Source: R/data_plots.R + Source: R/data_plots.R
clean_common_axis.Rd
diff --git a/reference/clean_date.html b/reference/clean_date.html index 5c28e0a8..b5b7c9fc 100644 --- a/reference/clean_date.html +++ b/reference/clean_date.html @@ -37,7 +37,7 @@

Attempts at applying uniform date format

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_date.Rd
diff --git a/reference/clean_sep.html b/reference/clean_sep.html index 0c63e791..61ee9195 100644 --- a/reference/clean_sep.html +++ b/reference/clean_sep.html @@ -37,7 +37,7 @@

gsub wrapper for piping with default values for separator substituting

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
clean_sep.Rd
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html index 80cd2ae4..8e7d4a15 100644 --- a/reference/columnSelectInput.html +++ b/reference/columnSelectInput.html @@ -39,7 +39,7 @@ Adds the option to select "none" which is handled later'>

A selectizeInput customized for data frames with column labels

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
columnSelectInput.Rd
diff --git a/reference/contrast_text.html b/reference/contrast_text.html index 4d7f8b49..7d65e673 100644 --- a/reference/contrast_text.html +++ b/reference/contrast_text.html @@ -39,7 +39,7 @@ background color.">

Contrast Text Color

- Source: R/contrast_text.R + Source: R/contrast_text.R
contrast_text.Rd
diff --git a/reference/create-column.html b/reference/create-column.html index 00036fd4..c5e337e5 100644 --- a/reference/create-column.html +++ b/reference/create-column.html @@ -37,7 +37,7 @@

Create new column

- Source: R/create-column-mod.R + Source: R/create-column-mod.R
create-column.Rd
diff --git a/reference/create_baseline.html b/reference/create_baseline.html index c7d95970..e315bfd0 100644 --- a/reference/create_baseline.html +++ b/reference/create_baseline.html @@ -37,7 +37,7 @@

Create a baseline table

- Source: R/baseline_table.R + Source: R/baseline_table.R
create_baseline.Rd
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html index 2af6221d..ea76c14f 100644 --- a/reference/create_log_tics.html +++ b/reference/create_log_tics.html @@ -37,7 +37,7 @@

Create summetric log ticks

- Source: R/regression_plot.R + Source: R/regression_plot.R
create_log_tics.Rd
diff --git a/reference/create_overview_datagrid.html b/reference/create_overview_datagrid.html index 384eb843..7c74f7e9 100644 --- a/reference/create_overview_datagrid.html +++ b/reference/create_overview_datagrid.html @@ -37,7 +37,7 @@

Create a data overview datagrid

- Source: R/data-summary.R + Source: R/data-summary.R
create_overview_datagrid.Rd
diff --git a/reference/custom_theme.html b/reference/custom_theme.html index fda560e4..655077db 100644 --- a/reference/custom_theme.html +++ b/reference/custom_theme.html @@ -37,7 +37,7 @@

Custom theme based on unity

- Source: R/theme.R + Source: R/theme.R
custom_theme.Rd
diff --git a/reference/cut-variable.html b/reference/cut-variable.html index b2f0da1c..e63d07a5 100644 --- a/reference/cut-variable.html +++ b/reference/cut-variable.html @@ -37,7 +37,7 @@

Module to Convert Numeric to Factor

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
cut-variable.Rd
diff --git a/reference/cut_var.html b/reference/cut_var.html index d6474afa..afe37f85 100644 --- a/reference/cut_var.html +++ b/reference/cut_var.html @@ -37,7 +37,7 @@

Extended cutting function with fall-back to the native base::cut

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
cut_var.Rd
diff --git a/reference/data-correlations.html b/reference/data-correlations.html index 6d4557d1..ca5fc950 100644 --- a/reference/data-correlations.html +++ b/reference/data-correlations.html @@ -37,7 +37,7 @@

Data correlations evaluation module

- Source: R/correlations-module.R + Source: R/correlations-module.R
data-correlations.Rd
diff --git a/reference/data-import.html b/reference/data-import.html index caa6ddcd..6c6c152d 100644 --- a/reference/data-import.html +++ b/reference/data-import.html @@ -37,7 +37,7 @@

Test app for the data-import module

- Source: R/data-import.R + Source: R/data-import.R
data-import.Rd
diff --git a/reference/data-missings.html b/reference/data-missings.html index 70e655e6..a257ee14 100644 --- a/reference/data-missings.html +++ b/reference/data-missings.html @@ -39,7 +39,7 @@ Data correlations evaluation module">

Data correlations evaluation module

- Source: R/missings-module.R, R/visual_summary.R + Source: R/missings-module.R, R/visual_summary.R
data-missings.Rd
diff --git a/reference/data-plots.html b/reference/data-plots.html index a053c1ef..5504d5df 100644 --- a/reference/data-plots.html +++ b/reference/data-plots.html @@ -55,7 +55,7 @@ Beatiful violin plot">

Data correlations evaluation module

- Source: R/data_plots.R, R/plot_box.R, R/plot_hbar.R, and 4 more + Source: R/data_plots.R, R/plot_box.R, R/plot_hbar.R, and 4 more
data-plots.Rd
diff --git a/reference/data-summary.html b/reference/data-summary.html index 89992e2d..99517399 100644 --- a/reference/data-summary.html +++ b/reference/data-summary.html @@ -37,7 +37,7 @@

Data summary module

- Source: R/data-summary.R + Source: R/data-summary.R
data-summary.Rd
diff --git a/reference/data_description.html b/reference/data_description.html index 104f77e1..f7f17daa 100644 --- a/reference/data_description.html +++ b/reference/data_description.html @@ -37,7 +37,7 @@

Ultra short data dascription

- Source: R/helpers.R + Source: R/helpers.R
data_description.Rd
diff --git a/reference/data_summary_gather.html b/reference/data_summary_gather.html index 99ef98b7..1f3c7987 100644 --- a/reference/data_summary_gather.html +++ b/reference/data_summary_gather.html @@ -37,7 +37,7 @@

Data summary for printing visual summary

- Source: R/visual_summary.R + Source: R/visual_summary.R
data_summary_gather.Rd
diff --git a/reference/data_type.html b/reference/data_type.html index 2166db25..dad1bc02 100644 --- a/reference/data_type.html +++ b/reference/data_type.html @@ -39,7 +39,7 @@ meaningful "clinical" data type.'>

Data type assessment.

- Source: R/regression_model.R + Source: R/regression_model.R
data_type.Rd
diff --git a/reference/data_type_filter.html b/reference/data_type_filter.html index 89c0c573..76dc40fe 100644 --- a/reference/data_type_filter.html +++ b/reference/data_type_filter.html @@ -37,7 +37,7 @@

Filter function to filter data set by variable type

- Source: R/helpers.R + Source: R/helpers.R
data_type_filter.Rd
diff --git a/reference/data_types.html b/reference/data_types.html index 6175d247..e23d3c76 100644 --- a/reference/data_types.html +++ b/reference/data_types.html @@ -37,7 +37,7 @@

Recognised data types from data_type

- Source: R/regression_model.R + Source: R/regression_model.R
data_types.Rd
diff --git a/reference/default_format_arguments.html b/reference/default_format_arguments.html index d6fabb4c..cbacc766 100644 --- a/reference/default_format_arguments.html +++ b/reference/default_format_arguments.html @@ -37,7 +37,7 @@

Defaults qmd formats

- Source: R/report.R + Source: R/report.R
default_format_arguments.Rd
diff --git a/reference/default_parsing.html b/reference/default_parsing.html index 55e170bf..d7438370 100644 --- a/reference/default_parsing.html +++ b/reference/default_parsing.html @@ -37,7 +37,7 @@

Default data parsing

- Source: R/helpers.R + Source: R/helpers.R
default_parsing.Rd
diff --git a/reference/drop_empty_event.html b/reference/drop_empty_event.html index b03b1a8b..7f98f77d 100644 --- a/reference/drop_empty_event.html +++ b/reference/drop_empty_event.html @@ -37,7 +37,7 @@

Drop empty events from REDCap export

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
drop_empty_event.Rd
diff --git a/reference/expression_string.html b/reference/expression_string.html index 6f6088a8..ca724da4 100644 --- a/reference/expression_string.html +++ b/reference/expression_string.html @@ -37,7 +37,7 @@

Deparses expression as string, substitutes native pipe and adds assign

- Source: R/helpers.R + Source: R/helpers.R
expression_string.Rd
diff --git a/reference/factorize.html b/reference/factorize.html index ae29ba2c..9c3e7631 100644 --- a/reference/factorize.html +++ b/reference/factorize.html @@ -37,7 +37,7 @@

Factorize variables in data.frame

- Source: R/helpers.R + Source: R/helpers.R
factorize.Rd
diff --git a/reference/file_export.html b/reference/file_export.html index 284ccf2b..d8c5f027 100644 --- a/reference/file_export.html +++ b/reference/file_export.html @@ -37,7 +37,7 @@

Title

- Source: R/helpers.R + Source: R/helpers.R
file_export.Rd
diff --git a/reference/format_writer.html b/reference/format_writer.html index 4eb36091..fd06517f 100644 --- a/reference/format_writer.html +++ b/reference/format_writer.html @@ -37,7 +37,7 @@

Merges list of named arguments for qmd header generation

- Source: R/report.R + Source: R/report.R
format_writer.Rd
diff --git a/reference/get_fun_options.html b/reference/get_fun_options.html index d24daa16..071ba044 100644 --- a/reference/get_fun_options.html +++ b/reference/get_fun_options.html @@ -37,7 +37,7 @@

Get the function options based on the selected function description

- Source: R/regression_model.R + Source: R/regression_model.R
get_fun_options.Rd
diff --git a/reference/get_label.html b/reference/get_label.html index 482207f9..eb7efc9f 100644 --- a/reference/get_label.html +++ b/reference/get_label.html @@ -37,7 +37,7 @@

Print label, and if missing print variable name

- Source: R/data_plots.R + Source: R/data_plots.R
get_label.Rd
diff --git a/reference/get_plot_options.html b/reference/get_plot_options.html index 749ad050..847d1943 100644 --- a/reference/get_plot_options.html +++ b/reference/get_plot_options.html @@ -37,7 +37,7 @@

Get the function options based on the selected function description

- Source: R/data_plots.R + Source: R/data_plots.R
get_plot_options.Rd
diff --git a/reference/get_var_icon.html b/reference/get_var_icon.html index e80a89f7..7d0db8e2 100644 --- a/reference/get_var_icon.html +++ b/reference/get_var_icon.html @@ -37,7 +37,7 @@

Easily get variable icon based on data type or class

- Source: R/data-summary.R + Source: R/data-summary.R
get_var_icon.Rd
diff --git a/reference/getfun.html b/reference/getfun.html index c8a60267..04906e23 100644 --- a/reference/getfun.html +++ b/reference/getfun.html @@ -37,7 +37,7 @@

Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'

- Source: R/helpers.R + Source: R/helpers.R
getfun.Rd
@@ -138,7 +138,7 @@ #> z$qr <- NULL #> z #> } -#> <bytecode: 0x560b3409b3f8> +#> <bytecode: 0x55d350aecab0> #> <environment: namespace:stats>
diff --git a/reference/gg_theme_export.html b/reference/gg_theme_export.html index a4be3539..e17a437d 100644 --- a/reference/gg_theme_export.html +++ b/reference/gg_theme_export.html @@ -37,7 +37,7 @@

GGplot default theme for plotting export objects

- Source: R/theme.R + Source: R/theme.R
gg_theme_export.Rd
diff --git a/reference/gg_theme_shiny.html b/reference/gg_theme_shiny.html index 6d0af891..87dbc3c6 100644 --- a/reference/gg_theme_shiny.html +++ b/reference/gg_theme_shiny.html @@ -37,7 +37,7 @@

GGplot default theme for plotting in Shiny

- Source: R/theme.R + Source: R/theme.R
gg_theme_shiny.Rd
diff --git a/reference/ggeulerr.html b/reference/ggeulerr.html index d0ca94d4..748363aa 100644 --- a/reference/ggeulerr.html +++ b/reference/ggeulerr.html @@ -41,7 +41,7 @@ but plots it using ggplot2">

Area proportional venn diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
ggeulerr.Rd
diff --git a/reference/grepl_fix.html b/reference/grepl_fix.html index 7a6dcc93..9ccf9e25 100644 --- a/reference/grepl_fix.html +++ b/reference/grepl_fix.html @@ -37,7 +37,7 @@

Matches pattern to vector based on match type

- Source: R/wide2long.R + Source: R/wide2long.R
grepl_fix.Rd
diff --git a/reference/if_not_missing.html b/reference/if_not_missing.html index 9c9be37e..fa61f1b5 100644 --- a/reference/if_not_missing.html +++ b/reference/if_not_missing.html @@ -37,7 +37,7 @@

Return if available

- Source: R/helpers.R + Source: R/helpers.R
if_not_missing.Rd
diff --git a/reference/import-file-type.html b/reference/import-file-type.html index ac8fe6e4..c6c36a52 100644 --- a/reference/import-file-type.html +++ b/reference/import-file-type.html @@ -37,7 +37,7 @@

Wrapper to ease data file import

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file-type.Rd
diff --git a/reference/import-file.html b/reference/import-file.html index 1267295b..487c7fa6 100644 --- a/reference/import-file.html +++ b/reference/import-file.html @@ -37,7 +37,7 @@

Import data from a file

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file.Rd
diff --git a/reference/import-file_module.html b/reference/import-file_module.html index f097e2b7..f1ade884 100644 --- a/reference/import-file_module.html +++ b/reference/import-file_module.html @@ -37,7 +37,7 @@

Test app for the import_file module

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
import-file_module.Rd
diff --git a/reference/index_embed.html b/reference/index_embed.html index 6c001ecb..630d555d 100644 --- a/reference/index_embed.html +++ b/reference/index_embed.html @@ -37,7 +37,7 @@

Split vector by an index and embed addition

- Source: R/report.R + Source: R/report.R
index_embed.Rd
diff --git a/reference/is_any_class.html b/reference/is_any_class.html index 5357c1da..25f08435 100644 --- a/reference/is_any_class.html +++ b/reference/is_any_class.html @@ -37,7 +37,7 @@

Test class

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
is_any_class.Rd
diff --git a/reference/is_consecutive.html b/reference/is_consecutive.html index 92bc8678..46bd971f 100644 --- a/reference/is_consecutive.html +++ b/reference/is_consecutive.html @@ -37,7 +37,7 @@

Checks if elements in vector are equally spaced as indication of ID

- Source: R/data-summary.R + Source: R/data-summary.R
is_consecutive.Rd
diff --git a/reference/is_datetime.html b/reference/is_datetime.html index af354932..e6f7a545 100644 --- a/reference/is_datetime.html +++ b/reference/is_datetime.html @@ -37,7 +37,7 @@

Test is date/datetime/time

- Source: R/cut-variable-dates.R + Source: R/cut-variable-dates.R
is_datetime.Rd
diff --git a/reference/is_identical_to_previous.html b/reference/is_identical_to_previous.html index d1edca00..12ad10b4 100644 --- a/reference/is_identical_to_previous.html +++ b/reference/is_identical_to_previous.html @@ -37,7 +37,7 @@

Test if element is identical to the previous

- Source: R/helpers.R + Source: R/helpers.R
is_identical_to_previous.Rd
diff --git a/reference/is_valid_redcap_url.html b/reference/is_valid_redcap_url.html index 8377da54..dddd2f29 100644 --- a/reference/is_valid_redcap_url.html +++ b/reference/is_valid_redcap_url.html @@ -37,7 +37,7 @@

Test if url is valid format for REDCap API

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_redcap_url.Rd
diff --git a/reference/is_valid_token.html b/reference/is_valid_token.html index 2fec7e35..b13ec9ec 100644 --- a/reference/is_valid_token.html +++ b/reference/is_valid_token.html @@ -37,7 +37,7 @@

Validate REDCap token

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
is_valid_token.Rd
diff --git a/reference/launch_FreesearchR.html b/reference/launch_FreesearchR.html index 59e70458..333cd912 100644 --- a/reference/launch_FreesearchR.html +++ b/reference/launch_FreesearchR.html @@ -37,7 +37,7 @@

Easily launch the FreesearchR app

- Source: R/launch_FreesearchR.R + Source: R/launch_FreesearchR.R
launch_FreesearchR.Rd
diff --git a/reference/limit_log.html b/reference/limit_log.html index 6494ee17..7926e725 100644 --- a/reference/limit_log.html +++ b/reference/limit_log.html @@ -37,7 +37,7 @@

Easily round log scale limits for nice plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
limit_log.Rd
diff --git a/reference/line_break.html b/reference/line_break.html index f51a9a72..6ac9733e 100644 --- a/reference/line_break.html +++ b/reference/line_break.html @@ -37,7 +37,7 @@

Line breaking at given number of characters for nicely plotting labels

- Source: R/data_plots.R + Source: R/data_plots.R
line_break.Rd
diff --git a/reference/merge_expression.html b/reference/merge_expression.html index 16df724e..1a950c33 100644 --- a/reference/merge_expression.html +++ b/reference/merge_expression.html @@ -37,7 +37,7 @@

Merge list of expressions

- Source: R/helpers.R + Source: R/helpers.R
merge_expression.Rd
diff --git a/reference/merge_long.html b/reference/merge_long.html index 075e167e..b186f6a2 100644 --- a/reference/merge_long.html +++ b/reference/merge_long.html @@ -37,7 +37,7 @@

Wrapper to pivot gtsummary table data to long for plotting

- Source: R/regression_plot.R + Source: R/regression_plot.R
merge_long.Rd
diff --git a/reference/missing_fraction.html b/reference/missing_fraction.html index 17aa0dd0..f4957f29 100644 --- a/reference/missing_fraction.html +++ b/reference/missing_fraction.html @@ -37,7 +37,7 @@

Get missingsness fraction

- Source: R/helpers.R + Source: R/helpers.R
missing_fraction.Rd
diff --git a/reference/missings_apex_plot.html b/reference/missings_apex_plot.html index e44ccc84..b882cfb2 100644 --- a/reference/missings_apex_plot.html +++ b/reference/missings_apex_plot.html @@ -37,7 +37,7 @@

Plot missings and class with apexcharter

- Source: R/visual_summary.R + Source: R/visual_summary.R
missings_apex_plot.Rd
diff --git a/reference/modify_qmd.html b/reference/modify_qmd.html index af2104c3..68423478 100644 --- a/reference/modify_qmd.html +++ b/reference/modify_qmd.html @@ -37,7 +37,7 @@

Wrapper to modify quarto file to render specific formats

- Source: R/report.R + Source: R/report.R
modify_qmd.Rd
diff --git a/reference/overview_vars.html b/reference/overview_vars.html index d76255de..f41f6f7c 100644 --- a/reference/overview_vars.html +++ b/reference/overview_vars.html @@ -37,7 +37,7 @@

Create a data overview data.frame ready for sparklines

- Source: R/data-summary.R + Source: R/data-summary.R
overview_vars.Rd
diff --git a/reference/pipe_string.html b/reference/pipe_string.html index d8faa81e..ac84e33d 100644 --- a/reference/pipe_string.html +++ b/reference/pipe_string.html @@ -37,7 +37,7 @@

Reduce character vector with the native pipe operator or character string

- Source: R/helpers.R + Source: R/helpers.R
pipe_string.Rd
diff --git a/reference/plot.tbl_regression.html b/reference/plot.tbl_regression.html index aaa6ff48..c1dd33ac 100644 --- a/reference/plot.tbl_regression.html +++ b/reference/plot.tbl_regression.html @@ -37,7 +37,7 @@

Regression coef plot from gtsummary. Slightly modified to pass on arguments

- Source: R/regression_plot.R + Source: R/regression_plot.R
plot.tbl_regression.Rd
diff --git a/reference/plot_euler.html b/reference/plot_euler.html index f84dac6b..42917062 100644 --- a/reference/plot_euler.html +++ b/reference/plot_euler.html @@ -37,7 +37,7 @@

Easily plot euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler.Rd
diff --git a/reference/plot_euler_single.html b/reference/plot_euler_single.html index 0aaec058..241c57b8 100644 --- a/reference/plot_euler_single.html +++ b/reference/plot_euler_single.html @@ -37,7 +37,7 @@

Easily plot single euler diagrams

- Source: R/plot_euler.R + Source: R/plot_euler.R
plot_euler_single.Rd
diff --git a/reference/plot_sankey_single.html b/reference/plot_sankey_single.html index 9595d6c0..de29e5eb 100644 --- a/reference/plot_sankey_single.html +++ b/reference/plot_sankey_single.html @@ -37,7 +37,7 @@

Beautiful sankey plot

- Source: R/plot_sankey.R + Source: R/plot_sankey.R
plot_sankey_single.Rd
diff --git a/reference/possible_functions.html b/reference/possible_functions.html index f8bc6696..22509276 100644 --- a/reference/possible_functions.html +++ b/reference/possible_functions.html @@ -37,7 +37,7 @@

Get possible regression models

- Source: R/regression_model.R + Source: R/regression_model.R
possible_functions.Rd
diff --git a/reference/possible_plots.html b/reference/possible_plots.html index 374451c1..62f90dfc 100644 --- a/reference/possible_plots.html +++ b/reference/possible_plots.html @@ -37,7 +37,7 @@

Get possible regression models

- Source: R/data_plots.R + Source: R/data_plots.R
possible_plots.Rd
diff --git a/reference/read_input.html b/reference/read_input.html index d1ea7958..d83bfbdb 100644 --- a/reference/read_input.html +++ b/reference/read_input.html @@ -37,7 +37,7 @@

Flexible file import based on extension

- Source: R/helpers.R + Source: R/helpers.R
read_input.Rd
diff --git a/reference/redcap_read_shiny_module.html b/reference/redcap_read_shiny_module.html index dd9a62e3..8a6c555b 100644 --- a/reference/redcap_read_shiny_module.html +++ b/reference/redcap_read_shiny_module.html @@ -39,7 +39,7 @@ Test app for the redcap_read_shiny_module">

Shiny module to browser and export REDCap data

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
redcap_read_shiny_module.Rd
diff --git a/reference/regression_model.html b/reference/regression_model.html index e3c4a20e..5f4328fb 100644 --- a/reference/regression_model.html +++ b/reference/regression_model.html @@ -37,7 +37,7 @@

Create a regression model programatically

- Source: R/regression_model.R + Source: R/regression_model.R
regression_model.Rd
diff --git a/reference/regression_table.html b/reference/regression_table.html index a29dc902..3e331214 100644 --- a/reference/regression_table.html +++ b/reference/regression_table.html @@ -37,7 +37,7 @@

Create table of regression model

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table.Rd
diff --git a/reference/regression_table_create.html b/reference/regression_table_create.html index 18fa3102..09d97ba6 100644 --- a/reference/regression_table_create.html +++ b/reference/regression_table_create.html @@ -37,7 +37,7 @@

Create regression summary table

- Source: R/regression_table.R + Source: R/regression_table.R
regression_table_create.Rd
diff --git a/reference/remove_empty_attr.html b/reference/remove_empty_attr.html index 41be85f9..c29ab063 100644 --- a/reference/remove_empty_attr.html +++ b/reference/remove_empty_attr.html @@ -37,7 +37,7 @@

Remove empty/NA attributes

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_attr.Rd
diff --git a/reference/remove_empty_cols.html b/reference/remove_empty_cols.html index 674dc6b3..1d8dcc76 100644 --- a/reference/remove_empty_cols.html +++ b/reference/remove_empty_cols.html @@ -37,7 +37,7 @@

Removes columns with completenes below cutoff

- Source: R/helpers.R + Source: R/helpers.R
remove_empty_cols.Rd
diff --git a/reference/remove_nested_list.html b/reference/remove_nested_list.html index e8261e8e..f28db867 100644 --- a/reference/remove_nested_list.html +++ b/reference/remove_nested_list.html @@ -37,7 +37,7 @@

Very simple function to remove nested lists, like when uploading .rds

- Source: R/helpers.R + Source: R/helpers.R
remove_nested_list.Rd
diff --git a/reference/repeated_instruments.html b/reference/repeated_instruments.html index ecc706f5..4b68b16c 100644 --- a/reference/repeated_instruments.html +++ b/reference/repeated_instruments.html @@ -37,7 +37,7 @@

Get names of repeated instruments

- Source: R/redcap_read_shiny_module.R + Source: R/redcap_read_shiny_module.R
repeated_instruments.Rd
diff --git a/reference/selectInputIcon.html b/reference/selectInputIcon.html index 9e9d188c..ad4b56b4 100644 --- a/reference/selectInputIcon.html +++ b/reference/selectInputIcon.html @@ -39,7 +39,7 @@ after, or on both sides of a classic selectInput.">

Create a select input control with icon(s)

- Source: R/import-file-ext.R + Source: R/import-file-ext.R
selectInputIcon.Rd
diff --git a/reference/set_column_label.html b/reference/set_column_label.html index e3934fec..e336c17d 100644 --- a/reference/set_column_label.html +++ b/reference/set_column_label.html @@ -37,7 +37,7 @@

(Re)label columns in data.frame

- Source: R/helpers.R + Source: R/helpers.R
set_column_label.Rd
diff --git a/reference/show_data.html b/reference/show_data.html index 103e2142..5afdc1a7 100644 --- a/reference/show_data.html +++ b/reference/show_data.html @@ -37,7 +37,7 @@

Display a table in a window

- Source: R/datagrid-infos-mod.R + Source: R/datagrid-infos-mod.R
show_data.Rd
diff --git a/reference/simple_snake.html b/reference/simple_snake.html index 43942ae8..2737b2f5 100644 --- a/reference/simple_snake.html +++ b/reference/simple_snake.html @@ -37,7 +37,7 @@

Simplified version of the snakecase packages to_snake_case

- Source: R/helpers.R + Source: R/helpers.R
simple_snake.Rd
diff --git a/reference/sort_by.html b/reference/sort_by.html index 6854e79c..63c0b195 100644 --- a/reference/sort_by.html +++ b/reference/sort_by.html @@ -37,7 +37,7 @@

Drop-in replacement for the base::sort_by with option to remove NAs

- Source: R/helpers.R + Source: R/helpers.R
sort_by.Rd
diff --git a/reference/specify_qmd_format.html b/reference/specify_qmd_format.html index 9c98e410..61ae140c 100644 --- a/reference/specify_qmd_format.html +++ b/reference/specify_qmd_format.html @@ -37,7 +37,7 @@

Specify format arguments to include in qmd header/frontmatter

- Source: R/report.R + Source: R/report.R
specify_qmd_format.Rd
diff --git a/reference/subset_types.html b/reference/subset_types.html index cd27b5b6..e7adbada 100644 --- a/reference/subset_types.html +++ b/reference/subset_types.html @@ -37,7 +37,7 @@

Easily subset by data type function

- Source: R/data_plots.R + Source: R/data_plots.R
subset_types.Rd
diff --git a/reference/supported_functions.html b/reference/supported_functions.html index f35a9ba1..34ef5228 100644 --- a/reference/supported_functions.html +++ b/reference/supported_functions.html @@ -39,7 +39,7 @@ unique for each element on list.'>

Implemented functions

- Source: R/regression_model.R + Source: R/regression_model.R
supported_functions.Rd
diff --git a/reference/supported_plots.html b/reference/supported_plots.html index 3227a574..c4c96b15 100644 --- a/reference/supported_plots.html +++ b/reference/supported_plots.html @@ -53,7 +53,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)

Implemented functions

- Source: R/data_plots.R + Source: R/data_plots.R
supported_plots.Rd
diff --git a/reference/symmetrical_scale_x_log10.html b/reference/symmetrical_scale_x_log10.html index 6520a5a7..960aa712 100644 --- a/reference/symmetrical_scale_x_log10.html +++ b/reference/symmetrical_scale_x_log10.html @@ -37,7 +37,7 @@

Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots

- Source: R/regression_plot.R + Source: R/regression_plot.R
symmetrical_scale_x_log10.Rd
diff --git a/reference/tbl_merge.html b/reference/tbl_merge.html index cd07ffdb..7d802263 100644 --- a/reference/tbl_merge.html +++ b/reference/tbl_merge.html @@ -39,7 +39,7 @@ spanner names.">

A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.

- Source: R/regression_table.R + Source: R/regression_table.R
tbl_merge.Rd
diff --git a/reference/type_icons.html b/reference/type_icons.html index 96d86d8c..362c4e1e 100644 --- a/reference/type_icons.html +++ b/reference/type_icons.html @@ -37,7 +37,7 @@

Get data type icons

- Source: R/data-summary.R + Source: R/data-summary.R
type_icons.Rd
diff --git a/reference/unique_short.html b/reference/unique_short.html index 5ee8795e..ce5ba619 100644 --- a/reference/unique_short.html +++ b/reference/unique_short.html @@ -39,7 +39,7 @@ strings.">

Create unique short names of character vector items based on index

- Source: R/visual_summary.R + Source: R/visual_summary.R
unique_short.Rd
diff --git a/reference/update-factor.html b/reference/update-factor.html index 0e386a49..3cd4fcff 100644 --- a/reference/update-factor.html +++ b/reference/update-factor.html @@ -37,7 +37,7 @@

Module to Reorder the Levels of a Factor Variable

- Source: R/update-factor-ext.R + Source: R/update-factor-ext.R
update-factor.Rd
diff --git a/reference/update-variables.html b/reference/update-variables.html index dce14614..9277a4f8 100644 --- a/reference/update-variables.html +++ b/reference/update-variables.html @@ -37,7 +37,7 @@

Select, rename and convert variables

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update-variables.Rd
diff --git a/reference/update_variables_datagrid.html b/reference/update_variables_datagrid.html index a47f09d6..e07f4178 100644 --- a/reference/update_variables_datagrid.html +++ b/reference/update_variables_datagrid.html @@ -37,7 +37,7 @@

Modified from the datamods pacakge

- Source: R/update-variables-ext.R + Source: R/update-variables-ext.R
update_variables_datagrid.Rd
diff --git a/reference/vectorSelectInput.html b/reference/vectorSelectInput.html index 44605d10..b851b423 100644 --- a/reference/vectorSelectInput.html +++ b/reference/vectorSelectInput.html @@ -37,7 +37,7 @@

A selectizeInput customized for named vectors

- Source: R/custom_SelectInput.R + Source: R/custom_SelectInput.R
vectorSelectInput.Rd
diff --git a/reference/vertical_stacked_bars.html b/reference/vertical_stacked_bars.html index 7c5bff0b..3ca74393 100644 --- a/reference/vertical_stacked_bars.html +++ b/reference/vertical_stacked_bars.html @@ -37,7 +37,7 @@

Vertical stacked bar plot wrapper

- Source: R/plot_hbar.R + Source: R/plot_hbar.R
vertical_stacked_bars.Rd
diff --git a/reference/visual_summary.html b/reference/visual_summary.html index 422dd2f4..917df70a 100644 --- a/reference/visual_summary.html +++ b/reference/visual_summary.html @@ -37,7 +37,7 @@

Ggplot2 data summary visualisation based on visdat::vis_dat.

- Source: R/visual_summary.R + Source: R/visual_summary.R
visual_summary.Rd
diff --git a/reference/wide2long.html b/reference/wide2long.html index f56e9618..a59bb768 100644 --- a/reference/wide2long.html +++ b/reference/wide2long.html @@ -41,7 +41,7 @@ an added "ignore" string pattern or similarly. Example 2.'>

Alternative pivoting method for easily pivoting based on name pattern

- Source: R/wide2long.R + Source: R/wide2long.R
wide2long.Rd
diff --git a/reference/wrap_plot_list.html b/reference/wrap_plot_list.html index 585c5782..3e17d015 100644 --- a/reference/wrap_plot_list.html +++ b/reference/wrap_plot_list.html @@ -37,7 +37,7 @@

Wrapping

- Source: R/data_plots.R + Source: R/data_plots.R
wrap_plot_list.Rd
diff --git a/reference/write_quarto.html b/reference/write_quarto.html index c8870085..4d4a7e0b 100644 --- a/reference/write_quarto.html +++ b/reference/write_quarto.html @@ -37,7 +37,7 @@

Wrapper to save data in RDS, load into specified qmd and render

- Source: R/helpers.R + Source: R/helpers.R
write_quarto.Rd
diff --git a/search.json b/search.json index 7907110a..cbbdf919 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. However, include work’s System Libraries, general-purpose tools generally available free programs used unmodified performing activities part work. example, Corresponding Source includes interface definition files associated source files work, source code shared libraries dynamically linked subprograms work specifically designed require, intimate data communication control flow subprograms parts work. Corresponding Source need include anything users can regenerate automatically parts Corresponding Source. Corresponding Source work source code form work.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_2-basic-permissions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"2. Basic Permissions.","title":"GNU Affero General Public License","text":"rights granted License granted term copyright Program, irrevocable provided stated conditions met. License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. License gives permission license work way, invalidate permission separately received . work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. Convey individual copies object code copy written offer provide Corresponding Source. alternative allowed occasionally noncommercially, received object code offer, accord subsection 6b. Convey object code offering access designated place (gratis charge), offer equivalent access Corresponding Source way place charge. need require recipients copy Corresponding Source along object code. place copy object code network server, Corresponding Source may different server (operated third party) supports equivalent copying facilities, provided maintain clear directions next object code saying find Corresponding Source. Regardless server hosts Corresponding Source, remain obligated ensure available long needed satisfy requirements. Convey object code using peer--peer transmission, provided inform peers object code Corresponding Source work offered general public charge subsection 6d. separable portion object code, whose source code excluded Corresponding Source System Library, need included conveying object code work. “User Product” either (1) “consumer product”, means tangible personal property normally used personal, family, household purposes, (2) anything designed sold incorporation dwelling. determining whether product consumer product, doubtful cases shall resolved favor coverage. particular product received particular user, “normally used” refers typical common use class product, regardless status particular user way particular user actually uses, expects expected use, product. product consumer product regardless whether product substantial commercial, industrial non-consumer uses, unless uses represent significant mode use product. “Installation Information” User Product means methods, procedures, authorization keys, information required install execute modified versions covered work User Product modified version Corresponding Source. information must suffice ensure continued functioning modified object code case prevented interfered solely modification made. convey object code work section , , specifically use , User Product, conveying occurs part transaction right possession use User Product transferred recipient perpetuity fixed term (regardless transaction characterized), Corresponding Source conveyed section must accompanied Installation Information. requirement apply neither third party retains ability install modified object code User Product (example, work installed ROM). requirement provide Installation Information include requirement continue provide support service, warranty, updates work modified installed recipient, User Product modified installed. Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms.","title":"GNU Affero General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. Notwithstanding provision License, material add covered work, may (authorized copyright holders material) supplement terms License terms: Disclaiming warranty limiting liability differently terms sections 15 16 License; Requiring preservation specified reasonable legal notices author attributions material Appropriate Legal Notices displayed works containing ; Prohibiting misrepresentation origin material, requiring modified versions material marked reasonable ways different original version; Limiting use publicity purposes names licensors authors material; Declining grant rights trademark law use trade names, trademarks, service marks; Requiring indemnification licensors authors material anyone conveys material (modified versions ) contractual assumptions liability recipient, liability contractual assumptions directly impose licensors authors. non-permissive additional terms considered “restrictions” within meaning section 10. Program received , part , contains notice stating governed License along term restriction, may remove term. license document contains restriction permits relicensing conveying License, may add covered work material governed terms license document, provided restriction survive relicensing conveying. add terms covered work accord section, must place, relevant source files, statement additional terms apply files, notice indicating find applicable terms. Additional terms, permissive non-permissive, may stated form separately written license, stated exceptions; requirements apply either way.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_8-termination","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"8. Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies.","title":"GNU Affero General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents.","title":"GNU Affero General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom.","title":"GNU Affero General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_13-remote-network-interaction-use-with-the-gnu-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see ."},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, however, version 25.4.2, FreesearchR app considered functional can used data evaluation analyses. (actual list quite long growing) planned new features improvements:","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"implementation-in-real-world-clinical-studies-and-projects","dir":"","previous_headings":"","what":"Implementation in real world clinical studies and projects","title":"Project roadmap","text":"really main goal whole project.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"new-features","dir":"","previous_headings":"","what":"New features:","title":"Project roadmap","text":"Merge data multiple sources (can merge sheets workbook (xls ods), allow merging several files /REDcap data) Additional plot types (bar plots, others…) Missingness analysis panel","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"expanded-options-for-regression-models","dir":"","previous_headings":"","what":"Expanded options for regression models:","title":"Project roadmap","text":"Expansion regression analysis functionality put hold now focus basic use-cases): study designs Cross-sectional data analyses Longitudinal data analyses Survival analysis regression models Stratified analyses Mixed models repeated measures Cox regression analyses Data handling Transforming data (transpose pivoting)","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/ROADMAP.html","id":"improved-documentation","dir":"","previous_headings":"","what":"Improved documentation:","title":"Project roadmap","text":"Video walk-central functions","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"getting-started-with-freesearchr","dir":"Articles","previous_headings":"","what":"Getting started with FreesearchR","title":"FreesearchR","text":"simple walk-trough basic instructions functions FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"launching","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Launching","title":"FreesearchR","text":"easiest way get started launch hosted version app shinyapps.io (click link). Additionally option run app locally access data current working environment. , open R (RStudio similar), run following code install latest version FreesearchR launch app: small note, standalone Windows app version drawing board well, time frame available.","code":"require(\"pak\") pak::pak(\"agdamsbo/FreesearchR\") library(FreesearchR) FreesearchR::launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"importing-data","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Importing data","title":"FreesearchR","text":"app “Import”, three options available importing data: file upload, REDCap server export local sample data. choosing data source, can set threshold filter data completenes manually specify variables include analyses.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"file-upload","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"File upload","title":"FreesearchR","text":"Currently several data file formats supported easy import (csv, txt, xls(x), ods, rds, dta). importing workbooks (xls(x) ods), prompted specify sheet(s) import. choosing multiple sheets, automatically merged common variable(s), please make sure key variables correctly named identically. notification posted error success. succesfull import data can previewed directly clicking “click see data” notification.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"redcap-server-export","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"REDCap server export","title":"FreesearchR","text":"Export data directly REDCap server. need first generate API-token (see instruction) REDCap. Make sure necessary rights . Please don’t store API-key device unless encrypted keyring, may compromise data safety. Log REDCap server retrieve token needed. Type correct webaddress REDCap server. module validate information can click “Connect”. unfold options preview data dictionary (main database metadata), choose fields/variables download well filtering options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"local-or-sample-data","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"Local or sample data","title":"FreesearchR","text":"opening online hosted app, mainly testing purposes. running app locally R computer, find data.frames current environment . extends possible uses app allow quick easy data insights code generation basic plotting fine tune.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"data","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Data","title":"FreesearchR","text":"panel get good overview data, check data classed formatted correctly, perform simple modifications filter data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"summary","dir":"Articles","previous_headings":"Getting started with FreesearchR > Data","what":"Summary","title":"FreesearchR","text":", data variables can inspected simple visualisation key measures. Also, data filtering available two levels: Data type filtering allows filter variable data type Observations level filtering allow filter data variable","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"modify","dir":"Articles","previous_headings":"Getting started with FreesearchR > Data","what":"Modify","title":"FreesearchR","text":"Re-class, rename, relabel variables. Subset data, create new variables reorder factor levels. Also, compare modified dataset original restore original data.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"evaluate","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Evaluate","title":"FreesearchR","text":"panel allows basic data evaluation.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"characteristics","dir":"Articles","previous_headings":"Getting started with FreesearchR > Evaluate","what":"Characteristics","title":"FreesearchR","text":"Create classical baseline characteristics table optional data stratification comparisons.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"correlation-matrix","dir":"Articles","previous_headings":"Getting started with FreesearchR > Evaluate","what":"Correlation matrix","title":"FreesearchR","text":"Visualise variable correlations get suggestions exclude highly correlated variables.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"visuals","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Visuals","title":"FreesearchR","text":"number plotting options visualise different aspects data. available plot types listed. Export plots directly sidebar easily adjusted plot dimensions next publication. Also copy code generate plot R-environment fine tune small details.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"regression","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Regression","title":"FreesearchR","text":"section intended simple explorative analyses proof--concept now. complex regression analyses probably just write code . available regression types listed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"table","dir":"Articles","previous_headings":"Getting started with FreesearchR > Regression","what":"Table","title":"FreesearchR","text":"Generate simple regression models get results nice table. also included exported report.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"plots","dir":"Articles","previous_headings":"Getting started with FreesearchR > Regression","what":"Plots","title":"FreesearchR","text":"Plot coefficients regression models forest plot. Choose model(s) include.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"checks","dir":"Articles","previous_headings":"Getting started with FreesearchR > Regression","what":"Checks","title":"FreesearchR","text":"Check model assumptions visually. Supported checks can chosen.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"report","dir":"Articles","previous_headings":"Getting started with FreesearchR > Download","what":"Report","title":"FreesearchR","text":"Download nice report baseline characteristics regression model results. Choose MS Word LibreOffice format.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"data-1","dir":"Articles","previous_headings":"Getting started with FreesearchR > Download","what":"Data","title":"FreesearchR","text":"Export modified dataset different formats.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html","id":"code","dir":"Articles","previous_headings":"Getting started with FreesearchR > Download","what":"Code","title":"FreesearchR","text":"See code snippets different steps data evaluation.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/data-types.html","id":"a-clinical-data-class","dir":"Articles","previous_headings":"","what":"A clinical data class","title":"Data types","text":"Traditionally R, data identified classes, like numeric, integer, double, logical, factor etc. classes can little confusing clinical operational standpoint. FreesearchR app, classes simplified modified following data types, assigned prioritised order like following: Categorising data way makes sense making choices evaluate analyse data. used throughout FreesearchR app simplify data handling.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"platform-info","dir":"Articles","previous_headings":"","what":"Platform info","title":"Session info","text":"","code":"FreesearchR:::session_data$platform |> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/session.html","id":"libraries","dir":"Articles","previous_headings":"","what":"Libraries","title":"Session info","text":"","code":"FreesearchR:::session_data$libs|> knitr::kable()"},{"path":"https://agdamsbo.github.io/FreesearchR/articles/visuals.html","id":"basic-visualisations","dir":"Articles","previous_headings":"","what":"Basic visualisations","title":"On visuals","text":"goal FreesearchR keep things simple. Visuals can get complicated. provide selection plots, helps visualise typical clinical enough use cases, publishing journals. want go , look sites suggestions sample code data plotting: R Charts: Extensive gallery great plots R Graph gallery: Another gallery great graphs graphics principles: Easy follow recommendations clear visuals.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/articles/visuals.html","id":"available-plots","dir":"Articles","previous_headings":"Basic visualisations","what":"Available plots","title":"On visuals","text":"available plot types listed.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Jutta Mari Adelin Jørgensen. Contributor. Anne Brink Behrndtz. Contributor.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). FreesearchR: free open-source browser based data analysis tool researchers publication ready output. R package version 25.6.3, https://github.com/agdamsbo/FreesearchR.","code":"@Manual{, title = {FreesearchR: A free and open-source browser based data analysis tool for researchers with publication ready output}, author = {Andreas Gammelgaard Damsbo}, year = {2025}, note = {R package version 25.6.3}, url = {https://github.com/agdamsbo/FreesearchR}, }"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"freesearchr-","dir":"","previous_headings":"","what":"A free and open-source browser based data analysis tool for researchers with publication ready output","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"FreesearchR simple, clinical health data exploration analysis tool democratise clinical research assisting researcher easily evaluate analyse data export publication ready results. FreesearchR free open-source, accessible web browser link. app can also run locally, please see . feedback welcome can shared GitHub issue. suggestions collaboration much welcomed. Please reach !","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"motivation","dir":"","previous_headings":"","what":"Motivation","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"app following simple goals: help health clinician getting overview data quality improvement projects clinical research help learners get good start analysing data coding R ease quick data overview basic visualisations clinical researcher","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-locally-on-your-own-machine","dir":"","previous_headings":"","what":"Run locally on your own machine","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"FreesearchR app can also run machine data transmitted anywhere. Blow available options.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"run-from-r-or-rstduio","dir":"","previous_headings":"Run locally on your own machine","what":"Run from R (or RStduio)","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"Working data R, FreesearchR quick easy tool get overview perform first explorative analyses get going. data available R session available FreesearchR app. Just follow steps get going: Requirement: need R installed possibly editor like RStudio. open R console copy/paste following code, install devtools package FreesearchR R-package dependencies:","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"running-with-docker-compose","dir":"","previous_headings":"Run locally on your own machine","what":"Running with docker compose","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"advanced users, wanting deploy FreesearchR app run anywhere, docker image available. minimal docker_compose.yml file:","code":"services: freesearchr: image: ghcr.io/agdamsbo/freesearchr:latest ports: - '3838:3838' restart: on-failure"},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"Please note FreesearchR project published Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/index.html","id":"acknowledgements","dir":"","previous_headings":"","what":"Acknowledgements","title":"A free and open-source browser based data analysis tool for researchers with publication ready output","text":"Like project, project never possible without great work others. sources packages used: FreesearchR app build Shiny based R. gtsummary: superb flexible way create publication-ready analytical summary tables. dreamRs: maintainers broad selection great extensions tools Shiny. easystats: performance::check_model() function central sparking idea create data analysis tool. IDEAfilter: visually appealing data filter function based {shinyDataFilter}. project written human AI-based tools. online FreesearchR app contains tracking script, transmitting minimal data usage. uploaded data transmitted anywhere. look tracking data . tracking data sent running app locally (see ).","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":null,"dir":"Reference","previous_headings":"","what":"Use the FreesearchR colors — FreesearchR_palette","title":"Use the FreesearchR colors — FreesearchR_palette","text":"Use FreesearchR colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Use the FreesearchR colors — FreesearchR_palette","text":"n number colors","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Use the FreesearchR colors — FreesearchR_palette","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Use the FreesearchR colors — FreesearchR_palette","text":"","code":"FreesearchR_palette(n=7) #> [1] \"#1E4A8F\" \"#FF6F61\" \"#00C896\" \"#FFB100\" \"#CC2E25\" \"#8A4FFF\" \"#11A0EC\""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\", fun = class_icons)"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |> overview_vars() |> toastui::datagrid() |> add_class_icon() {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\",\"<\\/i>\"]}},\"width\":60},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.1.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline( grid, column = \"vals\", color.main = \"#2a8484\", color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |> default_parsing() |> overview_vars() |> toastui::datagrid() |> add_sparkline() grid {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"logical\",\"logical\",\"factor\",\"factor\"],[\"numeric\",\"factor\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"logical\",\"logical\",\"factor\",\"factor\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[\"6\",\"6\",\"4\",\"6\",\"8\",\"6\",\"8\",\"4\",\"4\",\"6\",\"6\",\"8\",\"8\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"4\",\"8\",\"8\",\"8\",\"8\",\"4\",\"4\",\"4\",\"8\",\"6\",\"8\",\"4\"],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[false,false,true,true,false,true,false,true,true,true,true,false,false,false,false,false,false,true,true,true,true,false,false,false,false,true,false,true,false,false,false,true],[true,true,true,false,false,false,false,false,false,false,false,false,false,false,false,false,false,true,true,true,false,false,false,false,false,true,true,true,true,true,true,true],[\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"3\",\"3\",\"3\",\"3\",\"3\",\"4\",\"5\",\"5\",\"5\",\"5\",\"5\",\"4\"],[\"4\",\"4\",\"1\",\"1\",\"2\",\"1\",\"4\",\"2\",\"2\",\"4\",\"4\",\"3\",\"3\",\"3\",\"4\",\"4\",\"4\",\"1\",\"2\",\"1\",\"1\",\"2\",\"2\",\"4\",\"2\",\"1\",\"2\",\"2\",\"4\",\"6\",\"8\",\"2\"]]],\"colnames\":[\"icon\",\"class\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"icon\",\"name\":\"icon\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.htmlwidgets\",\"options\":{\"rendered\":[\"
<\\/div>\\n