version bump

CITATION.cff

@@ -9,7 +9,7 @@ type: software
 license: AGPL-3.0-or-later
 title: 'FreesearchR: A free and open-source browser based data analysis tool for researchers
   with publication ready output'
-version: 25.8.1
+version: 25.8.2
 doi: 10.5281/zenodo.14527429
 identifiers:
 - type: url
@@ -1002,6 +1002,34 @@ references:
     email: russell-lenth@uiowa.edu
   year: '2025'
   doi: 10.32614/CRAN.package.emmeans
+- type: software
+  title: readxl
+  abstract: 'readxl: Read Excel Files'
+  notes: Imports
+  url: https://readxl.tidyverse.org
+  repository: https://CRAN.R-project.org/package=readxl
+  authors:
+  - family-names: Wickham
+    given-names: Hadley
+    email: hadley@posit.co
+    orcid: https://orcid.org/0000-0003-4757-117X
+  - family-names: Bryan
+    given-names: Jennifer
+    email: jenny@posit.co
+    orcid: https://orcid.org/0000-0002-6983-2759
+  year: '2025'
+  doi: 10.32614/CRAN.package.readxl
+- type: software
+  title: NHANES
+  abstract: 'NHANES: Data from the US National Health and Nutrition Examination Study'
+  notes: Imports
+  repository: https://CRAN.R-project.org/package=NHANES
+  authors:
+  - family-names: Pruim
+    given-names: Randall
+    email: rpruim@calvin.edu
+  year: '2025'
+  doi: 10.32614/CRAN.package.NHANES
 - type: software
   title: styler
   abstract: 'styler: Non-Invasive Pretty Printing of R Code'

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: FreesearchR
 Title: A free and open-source browser based data analysis tool for researchers with publication ready output
-Version: 25.8.1
+Version: 25.8.2
 Authors@R: c(
     person("Andreas Gammelgaard", "Damsbo",email="agdamsbo@clin.au.dk", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-7559-1154")),
@@ -64,7 +64,9 @@ Imports:
     RcppArmadillo,
     ggcorrplot,
     shinyjs,
-    emmeans
+    emmeans,
+    readxl,
+    NHANES
 Suggests: 
     styler,
     devtools,

NEWS.md

@@ -1,6 +1,10 @@
-# FreesearchR 25.8.2 - DEV
+# FreesearchR 25.8.2
 
-- *NEW* preparing to automatically only show relevant tabs to simplify interface. NOT IMPLEMENTED YET
+- *NEW* Including the [NHANES](https://cran.r-project.org/web/packages/NHANES/refman/NHANES.html#NHANES) dataset for experimentation.
+
+- *BUG* Improved JS to correctly handle menu drop downs on mobile devices
+
+- *DOCS* Updated "Prepare > Overview" to "Prepare > Overview and filter" to better reflect options.
 
 # FreesearchR 25.8.1
 

R/app_version.R

@@ -1 +1 @@
-app_version <- function()'25.8.1'
+app_version <- function()'25.8.2'

R/helpers.R

@@ -153,7 +153,8 @@ dummy_Imports <- function() {
     cardx::all_of(),
     parameters::ci(),
     DT::addRow(),
-    bslib::accordion()
+    bslib::accordion(),
+    NHANES::NHANES()
   )
   # https://github.com/hadley/r-pkgs/issues/828
 }

R/hosted_version.R

@@ -1 +1 @@
-hosted_version <- function()'v25.8.1-250808'
+hosted_version <- function()'v25.8.2-250827'

R/ui_elements.R

@@ -160,10 +160,11 @@ ui_elements <- function(selection) {
       icon = shiny::icon("pen-to-square"),
       value = "nav_prepare",
       bslib::nav_panel(
-        title = "Overview",
+        title = "Overview and filter",
         icon = shiny::icon("eye"),
         value = "nav_prepare_overview",
         tags$h3("Overview and filtering"),
+        # validation_ui("validation_col"),
         fluidRow(
           shiny::column(
             width = 9,

SESSION.md

@@ -4,18 +4,18 @@
 |setting     |value                                      |
 |:-----------|:------------------------------------------|
 |version     |R version 4.4.1 (2024-06-14)               |
-|os          |macOS 15.3.1                               |
+|os          |macOS 15.6.1                               |
 |system      |aarch64, darwin20                          |
 |ui          |RStudio                                    |
 |language    |(EN)                                       |
 |collate     |en_US.UTF-8                                |
 |ctype       |en_US.UTF-8                                |
 |tz          |Europe/Copenhagen                          |
-|date        |2025-08-08                                 |
+|date        |2025-08-27                                 |
 |rstudio     |2025.05.0+496 Mariposa Orchid (desktop)    |
 |pandoc      |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) |
 |quarto      |1.7.30 @ /usr/local/bin/quarto             |
-|FreesearchR |25.8.1.250808                              |
+|FreesearchR |25.8.2.250827                              |
                                                                                 
                                                                                 
 --------------------------------------------------------------------------------
@@ -26,6 +26,8 @@
 |apexcharter       |0.4.4         |2024-09-06 |CRAN (R 4.4.1) |
 |askpass           |1.2.1         |2024-10-04 |CRAN (R 4.4.1) |
 |assertthat        |0.2.1         |2019-03-21 |CRAN (R 4.4.1) |
+|attachment        |0.4.5         |2025-03-14 |CRAN (R 4.4.1) |
+|attempt           |0.3.1         |2020-05-03 |CRAN (R 4.4.1) |
 |backports         |1.5.0         |2024-05-23 |CRAN (R 4.4.1) |
 |base64enc         |0.1-3         |2015-07-28 |CRAN (R 4.4.1) |
 |bayestestR        |0.16.1        |2025-07-01 |CRAN (R 4.4.1) |
@@ -34,7 +36,7 @@
 |bitops            |1.0-9         |2024-10-03 |CRAN (R 4.4.1) |
 |boot              |1.3-31        |2024-08-28 |CRAN (R 4.4.1) |
 |brio              |1.1.5         |2024-04-24 |CRAN (R 4.4.1) |
-|broom             |1.0.8         |2025-03-28 |CRAN (R 4.4.1) |
+|broom             |1.0.9         |2025-07-28 |CRAN (R 4.4.1) |
 |broom.helpers     |1.21.0        |2025-04-24 |CRAN (R 4.4.1) |
 |bsicons           |0.1.2         |2023-11-04 |CRAN (R 4.4.0) |
 |bslib             |0.9.0         |2025-01-30 |CRAN (R 4.4.1) |
@@ -43,6 +45,7 @@
 |cardx             |0.2.5         |2025-07-03 |CRAN (R 4.4.1) |
 |caTools           |1.18.3        |2024-09-04 |CRAN (R 4.4.1) |
 |cellranger        |1.1.0         |2016-07-27 |CRAN (R 4.4.0) |
+|cffr              |1.2.0         |2025-01-25 |CRAN (R 4.4.1) |
 |checkmate         |2.3.2         |2024-07-29 |CRAN (R 4.4.0) |
 |class             |7.3-23        |2025-01-01 |CRAN (R 4.4.1) |
 |classInt          |0.4-11        |2025-01-08 |CRAN (R 4.4.1) |
@@ -52,14 +55,17 @@
 |colorspace        |2.1-1         |2024-07-26 |CRAN (R 4.4.1) |
 |commonmark        |2.0.0         |2025-07-07 |CRAN (R 4.4.1) |
 |crayon            |1.5.3         |2024-06-20 |CRAN (R 4.4.1) |
+|credentials       |2.0.2         |2024-10-04 |CRAN (R 4.4.1) |
+|curl              |6.4.0         |2025-06-22 |CRAN (R 4.4.1) |
 |data.table        |1.17.8        |2025-07-10 |CRAN (R 4.4.1) |
 |datamods          |1.5.3         |2024-10-02 |CRAN (R 4.4.1) |
 |datawizard        |1.2.0         |2025-07-17 |CRAN (R 4.4.1) |
-|DEoptimR          |1.1-3-1       |2024-11-23 |CRAN (R 4.4.1) |
+|DEoptimR          |1.1-4         |2025-07-27 |CRAN (R 4.4.1) |
 |desc              |1.4.3         |2023-12-10 |CRAN (R 4.4.1) |
 |devtools          |2.4.5         |2022-10-11 |CRAN (R 4.4.0) |
 |DHARMa            |0.4.7         |2024-10-18 |CRAN (R 4.4.1) |
 |digest            |0.6.37        |2024-08-19 |CRAN (R 4.4.1) |
+|dockerfiler       |0.2.5         |2025-05-07 |CRAN (R 4.4.1) |
 |doParallel        |1.0.17        |2022-02-07 |CRAN (R 4.4.0) |
 |dplyr             |1.1.4         |2023-11-17 |CRAN (R 4.4.0) |
 |DT                |0.33          |2024-04-04 |CRAN (R 4.4.0) |
@@ -68,7 +74,7 @@
 |ellipsis          |0.3.2         |2021-04-29 |CRAN (R 4.4.1) |
 |emmeans           |1.11.2        |2025-07-11 |CRAN (R 4.4.1) |
 |esquisse          |2.1.0         |2025-02-21 |CRAN (R 4.4.1) |
-|estimability      |1.5.1         |2024-05-12 |CRAN (R 4.4.0) |
+|estimability      |1.5.1         |2024-05-12 |CRAN (R 4.4.1) |
 |eulerr            |7.0.2         |2024-03-28 |CRAN (R 4.4.0) |
 |evaluate          |1.0.4         |2025-06-18 |CRAN (R 4.4.1) |
 |farver            |2.1.2         |2024-05-13 |CRAN (R 4.4.1) |
@@ -82,16 +88,19 @@
 |foreach           |1.5.2         |2022-02-02 |CRAN (R 4.4.0) |
 |foreign           |0.8-90        |2025-03-31 |CRAN (R 4.4.1) |
 |Formula           |1.2-5         |2023-02-24 |CRAN (R 4.4.1) |
-|FreesearchR       |25.8.1        |NA         |NA             |
+|FreesearchR       |25.8.2        |NA         |NA             |
 |fs                |1.6.6         |2025-04-12 |CRAN (R 4.4.1) |
 |gdtools           |0.4.2         |2025-03-27 |CRAN (R 4.4.1) |
 |generics          |0.1.4         |2025-05-09 |CRAN (R 4.4.1) |
+|gert              |2.1.5         |2025-03-25 |CRAN (R 4.4.1) |
 |ggalluvial        |0.12.5        |2023-02-22 |CRAN (R 4.4.0) |
 |ggcorrplot        |0.1.4.1       |2023-09-05 |CRAN (R 4.4.0) |
 |ggforce           |0.5.0         |2025-06-18 |CRAN (R 4.4.1) |
 |ggplot2           |3.5.2         |2025-04-09 |CRAN (R 4.4.1) |
 |ggridges          |0.5.6         |2024-01-23 |CRAN (R 4.4.0) |
 |ggstats           |0.10.0        |2025-07-02 |CRAN (R 4.4.1) |
+|gh                |1.5.0         |2025-05-26 |CRAN (R 4.4.1) |
+|gitcreds          |0.1.2         |2022-09-08 |CRAN (R 4.4.1) |
 |glue              |1.8.0         |2024-09-30 |CRAN (R 4.4.1) |
 |gridExtra         |2.3           |2017-09-09 |CRAN (R 4.4.1) |
 |gt                |1.0.0         |2025-04-05 |CRAN (R 4.4.1) |
@@ -105,21 +114,24 @@
 |htmltools         |0.5.8.1       |2024-04-04 |CRAN (R 4.4.1) |
 |htmlwidgets       |1.6.4         |2023-12-06 |CRAN (R 4.4.0) |
 |httpuv            |1.6.16        |2025-04-16 |CRAN (R 4.4.1) |
-|IDEAFilter        |0.2.0         |2024-04-15 |CRAN (R 4.4.0) |
+|httr2             |1.2.1         |2025-07-22 |CRAN (R 4.4.1) |
-|insight           |1.3.1         |2025-06-30 |CRAN (R 4.4.1) |
+|IDEAFilter        |0.2.1         |2025-07-29 |CRAN (R 4.4.1) |
+|insight           |1.4.0         |2025-08-18 |CRAN (R 4.4.1) |
 |iterators         |1.0.14        |2022-02-05 |CRAN (R 4.4.1) |
 |jquerylib         |0.1.4         |2021-04-26 |CRAN (R 4.4.0) |
 |jsonlite          |2.0.0         |2025-03-27 |CRAN (R 4.4.1) |
+|jsonvalidate      |1.5.0         |2025-02-07 |CRAN (R 4.4.1) |
 |KernSmooth        |2.23-26       |2025-01-01 |CRAN (R 4.4.1) |
 |keyring           |1.4.1         |2025-06-15 |CRAN (R 4.4.1) |
 |knitr             |1.50          |2025-03-16 |CRAN (R 4.4.1) |
-|labeling          |0.4.3         |2023-08-29 |CRAN (R 4.4.1) |
 |later             |1.4.2         |2025-04-08 |CRAN (R 4.4.1) |
 |lattice           |0.22-7        |2025-04-02 |CRAN (R 4.4.1) |
 |lifecycle         |1.0.4         |2023-11-07 |CRAN (R 4.4.1) |
+|litedown          |0.7           |2025-04-08 |CRAN (R 4.4.1) |
 |lme4              |1.1-37        |2025-03-26 |CRAN (R 4.4.1) |
 |lubridate         |1.9.4         |2024-12-08 |CRAN (R 4.4.1) |
 |magrittr          |2.0.3         |2022-03-30 |CRAN (R 4.4.1) |
+|markdown          |2.0           |2025-03-23 |CRAN (R 4.4.1) |
 |MASS              |7.3-65        |2025-02-28 |CRAN (R 4.4.1) |
 |Matrix            |1.7-3         |2025-03-11 |CRAN (R 4.4.1) |
 |memoise           |2.0.1         |2021-11-26 |CRAN (R 4.4.0) |
@@ -127,13 +139,15 @@
 |miniUI            |0.1.2         |2025-04-17 |CRAN (R 4.4.1) |
 |minqa             |1.2.8         |2024-08-17 |CRAN (R 4.4.1) |
 |mvtnorm           |1.3-3         |2025-01-10 |CRAN (R 4.4.1) |
+|NHANES            |2.1.0         |2015-07-02 |CRAN (R 4.4.0) |
 |nlme              |3.1-168       |2025-03-31 |CRAN (R 4.4.1) |
 |nloptr            |2.2.1         |2025-03-17 |CRAN (R 4.4.1) |
 |nnet              |7.3-20        |2025-01-01 |CRAN (R 4.4.1) |
 |officer           |0.6.10        |2025-05-30 |CRAN (R 4.4.1) |
 |opdisDownsampling |1.0.1         |2024-04-15 |CRAN (R 4.4.0) |
 |openssl           |2.3.3         |2025-05-26 |CRAN (R 4.4.1) |
-|openxlsx2         |1.17          |2025-07-04 |CRAN (R 4.4.1) |
+|openxlsx2         |1.18          |2025-07-29 |CRAN (R 4.4.1) |
+|pak               |0.9.0         |2025-05-27 |CRAN (R 4.4.1) |
 |parameters        |0.27.0        |2025-07-09 |CRAN (R 4.4.1) |
 |patchwork         |1.3.1         |2025-06-21 |CRAN (R 4.4.1) |
 |pbmcapply         |1.5.1         |2022-04-28 |CRAN (R 4.4.1) |
@@ -145,7 +159,6 @@
 |pkgload           |1.4.0         |2024-06-28 |CRAN (R 4.4.0) |
 |plyr              |1.8.9         |2023-10-02 |CRAN (R 4.4.1) |
 |polyclip          |1.10-7        |2024-07-23 |CRAN (R 4.4.1) |
-|polylabelr        |0.3.0         |2024-11-19 |CRAN (R 4.4.1) |
 |pracma            |2.4.4         |2023-11-10 |CRAN (R 4.4.1) |
 |processx          |3.8.6         |2025-02-21 |CRAN (R 4.4.1) |
 |profvis           |0.4.0         |2024-09-20 |CRAN (R 4.4.1) |
@@ -155,14 +168,11 @@
 |purrr             |1.1.0         |2025-07-10 |CRAN (R 4.4.1) |
 |qqconf            |1.3.2         |2023-04-14 |CRAN (R 4.4.0) |
 |qqplotr           |0.0.6         |2023-01-25 |CRAN (R 4.4.0) |
-|quarto            |1.4.4         |2024-07-20 |CRAN (R 4.4.0) |
+|quarto            |1.5.0         |2025-07-28 |RSPM (R 4.4.0) |
-|R.cache           |0.17.0        |2025-05-02 |CRAN (R 4.4.1) |
-|R.methodsS3       |1.8.2         |2022-06-13 |CRAN (R 4.4.1) |
-|R.oo              |1.27.1        |2025-05-02 |CRAN (R 4.4.1) |
-|R.utils           |2.13.0        |2025-02-24 |CRAN (R 4.4.1) |
 |R6                |2.6.1         |2025-02-15 |CRAN (R 4.4.1) |
 |ragg              |1.4.0         |2025-04-10 |CRAN (R 4.4.1) |
 |rankinPlot        |1.1.0         |2023-01-30 |CRAN (R 4.4.0) |
+|rappdirs          |0.3.3         |2021-01-31 |CRAN (R 4.4.1) |
 |rbibutils         |2.3           |2024-10-04 |CRAN (R 4.4.1) |
 |RColorBrewer      |1.1-3         |2022-04-03 |CRAN (R 4.4.1) |
 |Rcpp              |1.1.0         |2025-07-02 |CRAN (R 4.4.1) |
@@ -173,11 +183,11 @@
 |readr             |2.1.5         |2024-01-10 |CRAN (R 4.4.0) |
 |readxl            |1.4.5         |2025-03-07 |CRAN (R 4.4.1) |
 |REDCapCAST        |25.3.2        |2025-03-10 |CRAN (R 4.4.1) |
-|REDCapR           |1.4.0         |2025-01-11 |CRAN (R 4.4.1) |
+|REDCapR           |1.5.0         |2025-07-28 |CRAN (R 4.4.1) |
 |reformulas        |0.4.1         |2025-04-30 |CRAN (R 4.4.1) |
 |remotes           |2.5.0         |2024-03-17 |CRAN (R 4.4.1) |
 |rempsyc           |0.1.9         |2025-02-01 |CRAN (R 4.4.1) |
-|renv              |1.1.4         |2025-03-20 |CRAN (R 4.4.1) |
+|renv              |1.1.5         |2025-07-24 |CRAN (R 4.4.1) |
 |reshape2          |1.4.4         |2020-04-09 |CRAN (R 4.4.0) |
 |rio               |1.2.3         |2024-09-25 |CRAN (R 4.4.1) |
 |rlang             |1.1.6         |2025-04-11 |CRAN (R 4.4.1) |
@@ -193,13 +203,15 @@
 |see               |0.11.0        |2025-03-11 |CRAN (R 4.4.1) |
 |sessioninfo       |1.2.3         |2025-02-05 |CRAN (R 4.4.1) |
 |shiny             |1.11.1        |2025-07-03 |CRAN (R 4.4.1) |
+|shiny.i18n        |0.3.0         |NA         |NA             |
+|shiny2docker      |0.0.3         |2025-06-28 |CRAN (R 4.4.1) |
 |shinybusy         |0.3.3         |2024-03-09 |CRAN (R 4.4.0) |
 |shinyjs           |2.1.0         |2021-12-23 |CRAN (R 4.4.0) |
 |shinyTime         |1.0.3         |2022-08-19 |CRAN (R 4.4.0) |
 |shinyWidgets      |0.9.0         |2025-02-21 |CRAN (R 4.4.1) |
 |stringi           |1.8.7         |2025-03-27 |CRAN (R 4.4.1) |
 |stringr           |1.5.1         |2023-11-14 |CRAN (R 4.4.0) |
-|styler            |1.10.3        |2024-04-07 |CRAN (R 4.4.0) |
+|sys               |3.4.3         |2024-10-04 |CRAN (R 4.4.1) |
 |systemfonts       |1.2.3         |2025-04-30 |CRAN (R 4.4.1) |
 |testthat          |3.2.3         |2025-01-13 |CRAN (R 4.4.1) |
 |textshaping       |1.0.1         |2025-05-01 |CRAN (R 4.4.1) |
@@ -215,6 +227,7 @@
 |urlchecker        |1.0.1         |2021-11-30 |CRAN (R 4.4.1) |
 |usethis           |3.1.0         |2024-11-26 |CRAN (R 4.4.1) |
 |uuid              |1.2-1         |2024-07-29 |CRAN (R 4.4.1) |
+|V8                |6.0.6         |2025-08-18 |CRAN (R 4.4.1) |
 |vctrs             |0.6.5         |2023-12-01 |CRAN (R 4.4.0) |
 |vroom             |1.6.5         |2023-12-05 |CRAN (R 4.4.0) |
 |withr             |3.0.2         |2024-10-28 |CRAN (R 4.4.1) |
@@ -223,4 +236,5 @@
 |xml2              |1.3.8         |2025-03-14 |CRAN (R 4.4.1) |
 |xtable            |1.8-4         |2019-04-21 |CRAN (R 4.4.1) |
 |yaml              |2.3.10        |2024-07-26 |CRAN (R 4.4.1) |
+|yesno             |0.1.3         |2024-07-26 |CRAN (R 4.4.1) |
 |zip               |2.3.3         |2025-05-13 |CRAN (R 4.4.1) |

app_docker/Dockerfile

@@ -3,7 +3,7 @@ RUN apt-get update -y && apt-get install -y  cmake make libcurl4-openssl-dev lib
 RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/
 RUN echo "options(renv.config.pak.enabled = FALSE, repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site
 RUN R -e 'install.packages("remotes")'
-RUN R -e 'remotes::install_version("renv", version = "1.1.4")'
+RUN R -e 'remotes::install_version("renv", version = "1.1.5")'
 COPY renv.lock renv.lock
 RUN --mount=type=cache,id=renv-cache,target=/root/.cache/R/renv R -e 'renv::restore()'
 WORKDIR /srv/shiny-server/

app_docker/app.R

@@ -49,7 +49,7 @@ library(rlang)
 #### Current file: /Users/au301842/FreesearchR/R//app_version.R 
 ########
 
-app_version <- function()'25.8.1'
+app_version <- function()'25.8.2'
 
 
 ########
@@ -3527,7 +3527,8 @@ dummy_Imports <- function() {
     cardx::all_of(),
     parameters::ci(),
     DT::addRow(),
-    bslib::accordion()
+    bslib::accordion(),
+    NHANES::NHANES()
   )
   # https://github.com/hadley/r-pkgs/issues/828
 }
@@ -4046,7 +4047,7 @@ simple_snake <- function(data){
 #### Current file: /Users/au301842/FreesearchR/R//hosted_version.R 
 ########
 
-hosted_version <- function()'v25.8.1-250808'
+hosted_version <- function()'v25.8.2-250827'
 
 
 ########
@@ -8486,10 +8487,11 @@ ui_elements <- function(selection) {
       icon = shiny::icon("pen-to-square"),
       value = "nav_prepare",
       bslib::nav_panel(
-        title = "Overview",
+        title = "Overview and filter",
         icon = shiny::icon("eye"),
         value = "nav_prepare_overview",
         tags$h3("Overview and filtering"),
+        # validation_ui("validation_col"),
         fluidRow(
           shiny::column(
             width = 9,
@@ -10964,6 +10966,18 @@ server <- function(input, output, session) {
   })
 
 
+  # validation_server(id = "validation_col",
+  #                   data = purrr::map2(
+  #                     .x = validation_lib()[1],
+  #                     .y = list(
+  #                       list(
+  #                         x =
+  #                           reactive(rv$data),
+  #                         y =
+  #                           reactive(rv$data_variables)
+  #                         )),
+  #                     make_validation))
+
   #########  Data filter
   # IDEAFilter has the least cluttered UI, but might have a License issue
   # Consider using shinyDataFilter, though not on CRAN

app_docker/www/scripts.js

@@ -6,24 +6,52 @@ $(document).on('shown.bs.tab', '#main_panel', function(e) {
   $('#main_panel .dropdown-toggle').removeClass('show').attr('aria-expanded', 'false');
 });
 
+
 $(document).on('shiny:sessioninitialized', function() {
-// Function to collapse navbar on mobile
+  // Function to collapse navbar on mobile
-function collapseNavbar() {
+  function collapseNavbar() {
-  var navbar = $('.navbar-collapse');
+    var navbar = $('.navbar-collapse');
-  if (navbar.hasClass('show')) {
+    if (navbar.hasClass('show')) {
-    navbar.removeClass('show');
+      navbar.removeClass('show');
-    $('.navbar-toggler').addClass('collapsed');
+      $('.navbar-toggler').addClass('collapsed');
-    $('.navbar-toggler').attr('aria-expanded', 'false');
+      $('.navbar-toggler').attr('aria-expanded', 'false');
-  }
+    }
   }
 
-  // Add click event to navigation tabs
+  // Main approach: Handle clicks on nav elements
-  $(document).on('click', '.nav-link[data-bs-toggle=\"tab\"]', function() {
+  $(document).on('click', '.navbar-nav .nav-link, .dropdown-item', function(event) {
+    var $target = $(event.currentTarget);
+
+    // Don't collapse if this is a dropdown toggle
+    if ($target.hasClass('dropdown-toggle')) {
+      return;
+    }
+
+    // Don't collapse if this is inside a dropdown and the dropdown should stay open
+    if ($target.hasClass('nav-link') && $target.closest('.dropdown').length &&
+        !$target.attr('data-bs-toggle')) {
+      return;
+    }
+
+    // Collapse the navbar after a short delay
     setTimeout(collapseNavbar, 10);
   });
 
-  // Also handle direct clicks on nav items
+  // Handle tab toggles specifically
-  $(document).on('click', '.navbar-nav .nav-link', function() {
+  $(document).on('click', '.nav-link[data-bs-toggle="tab"]', function() {
-    setTimeout(collapseNavbar, 10);
+    if (!$(this).hasClass('dropdown-toggle')) {
+      setTimeout(collapseNavbar, 10);
+    }
+  });
+
+  // Optional: Handle clicks outside the navbar to close it
+  $(document).on('click', function(event) {
+    var navbar = $('.navbar-collapse');
+
+    // Check if click is outside navbar and navbar is open
+    if (navbar.hasClass('show') &&
+        !$(event.target).closest('.navbar').length) {
+      collapseNavbar();
+    }
   });
 });

inst/apps/FreesearchR/app.R

@@ -3527,7 +3527,8 @@ dummy_Imports <- function() {
     cardx::all_of(),
     parameters::ci(),
     DT::addRow(),
-    bslib::accordion()
+    bslib::accordion(),
+    NHANES::NHANES()
   )
   # https://github.com/hadley/r-pkgs/issues/828
 }
@@ -4046,7 +4047,7 @@ simple_snake <- function(data){
 #### Current file: /Users/au301842/FreesearchR/R//hosted_version.R 
 ########
 
-hosted_version <- function()'v25.8.1-250808'
+hosted_version <- function()'v25.8.1-250827'
 
 
 ########
@@ -8486,10 +8487,11 @@ ui_elements <- function(selection) {
       icon = shiny::icon("pen-to-square"),
       value = "nav_prepare",
       bslib::nav_panel(
-        title = "Overview",
+        title = "Overview and filter",
         icon = shiny::icon("eye"),
         value = "nav_prepare_overview",
         tags$h3("Overview and filtering"),
+        # validation_ui("validation_col"),
         fluidRow(
           shiny::column(
             width = 9,
@@ -10963,6 +10965,18 @@ server <- function(input, output, session) {
   })
 
 
+  # validation_server(id = "validation_col",
+  #                   data = purrr::map2(
+  #                     .x = validation_lib()[1],
+  #                     .y = list(
+  #                       list(
+  #                         x =
+  #                           reactive(rv$data),
+  #                         y =
+  #                           reactive(rv$data_variables)
+  #                         )),
+  #                     make_validation))
+
   #########  Data filter
   # IDEAFilter has the least cluttered UI, but might have a License issue
   # Consider using shinyDataFilter, though not on CRAN

inst/apps/FreesearchR/www/scripts.js

@@ -6,24 +6,52 @@ $(document).on('shown.bs.tab', '#main_panel', function(e) {
   $('#main_panel .dropdown-toggle').removeClass('show').attr('aria-expanded', 'false');
 });
 
+
 $(document).on('shiny:sessioninitialized', function() {
-// Function to collapse navbar on mobile
+  // Function to collapse navbar on mobile
-function collapseNavbar() {
+  function collapseNavbar() {
-  var navbar = $('.navbar-collapse');
+    var navbar = $('.navbar-collapse');
-  if (navbar.hasClass('show')) {
+    if (navbar.hasClass('show')) {
-    navbar.removeClass('show');
+      navbar.removeClass('show');
-    $('.navbar-toggler').addClass('collapsed');
+      $('.navbar-toggler').addClass('collapsed');
-    $('.navbar-toggler').attr('aria-expanded', 'false');
+      $('.navbar-toggler').attr('aria-expanded', 'false');
-  }
+    }
   }
 
-  // Add click event to navigation tabs
+  // Main approach: Handle clicks on nav elements
-  $(document).on('click', '.nav-link[data-bs-toggle=\"tab\"]', function() {
+  $(document).on('click', '.navbar-nav .nav-link, .dropdown-item', function(event) {
+    var $target = $(event.currentTarget);
+
+    // Don't collapse if this is a dropdown toggle
+    if ($target.hasClass('dropdown-toggle')) {
+      return;
+    }
+
+    // Don't collapse if this is inside a dropdown and the dropdown should stay open
+    if ($target.hasClass('nav-link') && $target.closest('.dropdown').length &&
+        !$target.attr('data-bs-toggle')) {
+      return;
+    }
+
+    // Collapse the navbar after a short delay
     setTimeout(collapseNavbar, 10);
   });
 
-  // Also handle direct clicks on nav items
+  // Handle tab toggles specifically
-  $(document).on('click', '.navbar-nav .nav-link', function() {
+  $(document).on('click', '.nav-link[data-bs-toggle="tab"]', function() {
-    setTimeout(collapseNavbar, 10);
+    if (!$(this).hasClass('dropdown-toggle')) {
+      setTimeout(collapseNavbar, 10);
+    }
+  });
+
+  // Optional: Handle clicks outside the navbar to close it
+  $(document).on('click', function(event) {
+    var navbar = $('.navbar-collapse');
+
+    // Check if click is outside navbar and navbar is open
+    if (navbar.hasClass('show') &&
+        !$(event.target).closest('.navbar').length) {
+      collapseNavbar();
+    }
   });
 });

inst/assets/js/FreesearchR.js

@@ -6,24 +6,52 @@ $(document).on('shown.bs.tab', '#main_panel', function(e) {
   $('#main_panel .dropdown-toggle').removeClass('show').attr('aria-expanded', 'false');
 });
 
+
 $(document).on('shiny:sessioninitialized', function() {
-// Function to collapse navbar on mobile
+  // Function to collapse navbar on mobile
-function collapseNavbar() {
+  function collapseNavbar() {
-  var navbar = $('.navbar-collapse');
+    var navbar = $('.navbar-collapse');
-  if (navbar.hasClass('show')) {
+    if (navbar.hasClass('show')) {
-    navbar.removeClass('show');
+      navbar.removeClass('show');
-    $('.navbar-toggler').addClass('collapsed');
+      $('.navbar-toggler').addClass('collapsed');
-    $('.navbar-toggler').attr('aria-expanded', 'false');
+      $('.navbar-toggler').attr('aria-expanded', 'false');
-  }
+    }
   }
 
-  // Add click event to navigation tabs
+  // Main approach: Handle clicks on nav elements
-  $(document).on('click', '.nav-link[data-bs-toggle=\"tab\"]', function() {
+  $(document).on('click', '.navbar-nav .nav-link, .dropdown-item', function(event) {
+    var $target = $(event.currentTarget);
+
+    // Don't collapse if this is a dropdown toggle
+    if ($target.hasClass('dropdown-toggle')) {
+      return;
+    }
+
+    // Don't collapse if this is inside a dropdown and the dropdown should stay open
+    if ($target.hasClass('nav-link') && $target.closest('.dropdown').length &&
+        !$target.attr('data-bs-toggle')) {
+      return;
+    }
+
+    // Collapse the navbar after a short delay
     setTimeout(collapseNavbar, 10);
   });
 
-  // Also handle direct clicks on nav items
+  // Handle tab toggles specifically
-  $(document).on('click', '.navbar-nav .nav-link', function() {
+  $(document).on('click', '.nav-link[data-bs-toggle="tab"]', function() {
-    setTimeout(collapseNavbar, 10);
+    if (!$(this).hasClass('dropdown-toggle')) {
+      setTimeout(collapseNavbar, 10);
+    }
+  });
+
+  // Optional: Handle clicks outside the navbar to close it
+  $(document).on('click', function(event) {
+    var navbar = $('.navbar-collapse');
+
+    // Check if click is outside navbar and navbar is open
+    if (navbar.hasClass('show') &&
+        !$(event.target).closest('.navbar').length) {
+      collapseNavbar();
+    }
   });
 });

renv/activate.R

@@ -2,7 +2,7 @@
 local({
 
   # the requested version of renv
-  version <- "1.1.4"
+  version <- "1.1.5"
   attr(version, "sha") <- NULL
 
   # the project directory