diff --git a/SESSION.html b/SESSION.html index 2589efae..6856da3b 100644 --- a/SESSION.html +++ b/SESSION.html @@ -43,7 +43,7 @@ - +
——————————– R environment ———————————
|setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-03-24 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.4.260324 |
|setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-03-23 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.4.260323 |

———————————– packages ———————————–

@@ -134,42 +134,50 @@ - + + + + + - + - + - + - + - + - + - + - + + + + + @@ -402,62 +410,62 @@ - + + + + + - + - + - + - + - + - + - + - + - + - + - + - + - - - - @@ -550,58 +558,58 @@ - - - - - + - + - + - + - + - + - + - + - + - + - + - + + + + + @@ -814,10 +822,18 @@ - + + + + + + + + + diff --git a/SESSION.md b/SESSION.md index 751ba026..3d4f7885 100644 --- a/SESSION.md +++ b/SESSION.md @@ -2,7 +2,7 @@ | ——————————– R environment ——————————— | |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-03-24 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.4.260324 \| | +| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-03-23 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.4.260323 \| | ## ———————————– packages ———————————– @@ -29,6 +29,7 @@ | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | +| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.0) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -38,6 +39,7 @@ | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | +| curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | | datawizard | 1.3.0 | 2025-10-11 | CRAN (R 4.5.0) | @@ -96,6 +98,7 @@ | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | +| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.0) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | @@ -109,7 +112,6 @@ | MASS | 7.3-65 | 2025-02-28 | CRAN (R 4.5.0) | | Matrix | 1.7-4 | 2025-08-28 | CRAN (R 4.5.0) | | memoise | 2.0.1 | 2021-11-26 | CRAN (R 4.5.0) | -| mgcv | 1.9-4 | 2025-11-07 | CRAN (R 4.5.0) | | mime | 0.13 | 2025-03-17 | CRAN (R 4.5.0) | | minqa | 1.2.8 | 2024-08-17 | CRAN (R 4.5.0) | | mvtnorm | 1.3-2 | 2024-11-04 | CRAN (R 4.5.2) | @@ -133,7 +135,6 @@ | pkgload | 1.5.0 | 2026-02-03 | CRAN (R 4.5.2) | | plyr | 1.8.9 | 2023-10-02 | CRAN (R 4.5.0) | | polyclip | 1.10-7 | 2024-07-23 | CRAN (R 4.5.0) | -| polylabelr | 1.0.0 | 2026-01-19 | CRAN (R 4.5.2) | | pracma | 2.4.6 | 2025-10-22 | CRAN (R 4.5.0) | | processx | 3.8.6 | 2025-02-21 | CRAN (R 4.5.0) | | promises | 1.5.0 | 2025-11-01 | CRAN (R 4.5.0) | @@ -146,6 +147,7 @@ | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.1 | 2026-03-06 | CRAN (R 4.5.2) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | +| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -199,7 +201,9 @@ | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | +| utf8 | 1.2.6 | 2025-06-08 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | +| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/articles/session.html b/articles/session.html index 9fb44cf5..de2e6caa 100644 --- a/articles/session.html +++ b/articles/session.html @@ -133,7 +133,7 @@ packages and the latest build info.

- + @@ -149,7 +149,7 @@ packages and the latest build info.

- +
package1.1.0 2016-07-27 CRAN (R 4.5.0)
checkmate
cffr1.2.12026-01-12CRAN (R 4.5.2)
checkmate 2.3.4 2026-02-03 CRAN (R 4.5.2)
class
class 7.3-23 2025-01-01 CRAN (R 4.5.0)
classInt
classInt 0.4-11 2025-01-08 CRAN (R 4.5.0)
cli
cli 3.6.5 2025-04-23 CRAN (R 4.5.0)
cluster
cluster 2.1.8.2 2026-02-05 CRAN (R 4.5.2)
codetools
codetools 0.2-20 2024-03-31 CRAN (R 4.5.0)
colorspace
colorspace 2.1-2 2025-09-22 CRAN (R 4.5.0)
commonmark
commonmark 2.0.0 2025-07-07 CRAN (R 4.5.0)
crayon
crayon 1.5.3 2024-06-20 CRAN (R 4.5.0)
curl7.0.02025-08-19CRAN (R 4.5.0)
data.table 1.18.2.1 2026-01-272.0.0 2025-03-27 CRAN (R 4.5.0)
KernSmooth
jsonvalidate1.5.02025-02-07CRAN (R 4.5.0)
KernSmooth 2.23-26 2025-01-01 CRAN (R 4.5.0)
keyring
keyring 1.4.1 2025-06-15 CRAN (R 4.5.0)
knitr
knitr 1.51 2025-12-20 CRAN (R 4.5.2)
labeling
labeling 0.4.3 2023-08-29 CRAN (R 4.5.0)
later
later 1.4.8 2026-03-05 CRAN (R 4.5.2)
lattice
lattice 0.22-7 2025-04-02 CRAN (R 4.5.2)
lifecycle
lifecycle 1.0.5 2026-01-08 CRAN (R 4.5.2)
lme4
lme4 2.0-1 2026-03-05 CRAN (R 4.5.2)
lubridate
lubridate 1.9.5 2026-02-04 CRAN (R 4.5.2)
magrittr
magrittr 2.0.4 2025-09-12 CRAN (R 4.5.0)
MASS
MASS 7.3-65 2025-02-28 CRAN (R 4.5.0)
Matrix
Matrix 1.7-4 2025-08-28 CRAN (R 4.5.0)
memoise
memoise 2.0.1 2021-11-26 CRAN (R 4.5.0)
mgcv1.9-42025-11-07CRAN (R 4.5.0)
mime 0.13 2025-03-171.10-7 2024-07-23 CRAN (R 4.5.0)
polylabelr1.0.02026-01-19CRAN (R 4.5.2)
pracma
pracma 2.4.6 2025-10-22 CRAN (R 4.5.0)
processx
processx 3.8.6 2025-02-21 CRAN (R 4.5.0)
promises
promises 1.5.0 2025-11-01 CRAN (R 4.5.0)
proxy
proxy 0.4-29 2025-12-29 CRAN (R 4.5.2)
ps
ps 1.9.1 2025-04-12 CRAN (R 4.5.0)
purrr
purrr 1.2.1 2026-01-09 CRAN (R 4.5.2)
qqconf
qqconf 1.3.2 2023-04-14 CRAN (R 4.5.0)
qqplotr
qqplotr 0.0.7 2025-09-05 CRAN (R 4.5.0)
quarto
quarto 1.5.1 2025-09-04 CRAN (R 4.5.0)
R6
R6 2.6.1 2025-02-15 CRAN (R 4.5.0)
ragg
ragg 1.5.1 2026-03-06 CRAN (R 4.5.2)
rankinPlot
rankinPlot 1.1.0 2023-01-30 CRAN (R 4.5.0)
rappdirs0.3.42026-01-17CRAN (R 4.5.2)
rbibutils 2.4.1 2026-01-213.2.1 2025-09-06 CRAN (R 4.5.0)
uuid
utf81.2.62025-06-08CRAN (R 4.5.0)
uuid 1.2-2 2026-01-23 CRAN (R 4.5.2)
V88.0.12025-10-10CRAN (R 4.5.0)
vctrs 0.7.1 2026-01-23
date2026-03-242026-03-23
rstudio
FreesearchR26.3.4.26032426.3.4.260323
@@ -294,59 +294,71 @@ packages and the latest build info.

CRAN (R 4.5.0) +cffr +1.2.1 +2026-01-12 +CRAN (R 4.5.2) + + checkmate 2.3.4 2026-02-03 CRAN (R 4.5.2) - + class 7.3-23 2025-01-01 CRAN (R 4.5.0) - + classInt 0.4-11 2025-01-08 CRAN (R 4.5.0) - + cli 3.6.5 2025-04-23 CRAN (R 4.5.0) - + cluster 2.1.8.2 2026-02-05 CRAN (R 4.5.2) - + codetools 0.2-20 2024-03-31 CRAN (R 4.5.0) - + colorspace 2.1-2 2025-09-22 CRAN (R 4.5.0) - + commonmark 2.0.0 2025-07-07 CRAN (R 4.5.0) - + crayon 1.5.3 2024-06-20 CRAN (R 4.5.0) + +curl +7.0.0 +2025-08-19 +CRAN (R 4.5.0) + data.table 1.18.2.1 @@ -696,89 +708,89 @@ packages and the latest build info.

CRAN (R 4.5.0) +jsonvalidate +1.5.0 +2025-02-07 +CRAN (R 4.5.0) + + KernSmooth 2.23-26 2025-01-01 CRAN (R 4.5.0) - + keyring 1.4.1 2025-06-15 CRAN (R 4.5.0) - + knitr 1.51 2025-12-20 CRAN (R 4.5.2) - + labeling 0.4.3 2023-08-29 CRAN (R 4.5.0) - + later 1.4.8 2026-03-05 CRAN (R 4.5.2) - + lattice 0.22-7 2025-04-02 CRAN (R 4.5.2) - + lifecycle 1.0.5 2026-01-08 CRAN (R 4.5.2) - + lme4 2.0-1 2026-03-05 CRAN (R 4.5.2) - + lubridate 1.9.5 2026-02-04 CRAN (R 4.5.2) - + magrittr 2.0.4 2025-09-12 CRAN (R 4.5.0) - + MASS 7.3-65 2025-02-28 CRAN (R 4.5.0) - + Matrix 1.7-4 2025-08-28 CRAN (R 4.5.0) - + memoise 2.0.1 2021-11-26 CRAN (R 4.5.0) - -mgcv -1.9-4 -2025-11-07 -CRAN (R 4.5.0) - mime 0.13 @@ -918,83 +930,83 @@ packages and the latest build info.

CRAN (R 4.5.0) -polylabelr -1.0.0 -2026-01-19 -CRAN (R 4.5.2) - - pracma 2.4.6 2025-10-22 CRAN (R 4.5.0) - + processx 3.8.6 2025-02-21 CRAN (R 4.5.0) - + promises 1.5.0 2025-11-01 CRAN (R 4.5.0) - + proxy 0.4-29 2025-12-29 CRAN (R 4.5.2) - + ps 1.9.1 2025-04-12 CRAN (R 4.5.0) - + purrr 1.2.1 2026-01-09 CRAN (R 4.5.2) - + qqconf 1.3.2 2023-04-14 CRAN (R 4.5.0) - + qqplotr 0.0.7 2025-09-05 CRAN (R 4.5.0) - + quarto 1.5.1 2025-09-04 CRAN (R 4.5.0) - + R6 2.6.1 2025-02-15 CRAN (R 4.5.0) - + ragg 1.5.1 2026-03-06 CRAN (R 4.5.2) - + rankinPlot 1.1.0 2023-01-30 CRAN (R 4.5.0) + +rappdirs +0.3.4 +2026-01-17 +CRAN (R 4.5.2) + rbibutils 2.4.1 @@ -1314,11 +1326,23 @@ packages and the latest build info.

CRAN (R 4.5.0) +utf8 +1.2.6 +2025-06-08 +CRAN (R 4.5.0) + + uuid 1.2-2 2026-01-23 CRAN (R 4.5.2) + +V8 +8.0.1 +2025-10-10 +CRAN (R 4.5.0) + vctrs 0.7.1 diff --git a/articles/session.md b/articles/session.md index 7855c457..2c782b1d 100644 --- a/articles/session.md +++ b/articles/session.md @@ -28,11 +28,11 @@ FreesearchR:::session_data$platform |> knitr::kable() | collate | en_US.UTF-8 | | ctype | en_US.UTF-8 | | tz | Europe/Copenhagen | -| date | 2026-03-24 | +| date | 2026-03-23 | | rstudio | 2026.01.1+403 Apple Blossom (desktop) | | pandoc | 3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | | quarto | 1.7.30 @ /usr/local/bin/quarto | -| FreesearchR | 26.3.4.260324 | +| FreesearchR | 26.3.4.260323 | ## Libraries @@ -63,6 +63,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | +| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.0) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -72,6 +73,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | +| curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | | datawizard | 1.3.0 | 2025-10-11 | CRAN (R 4.5.0) | @@ -130,6 +132,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | +| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.0) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | @@ -143,7 +146,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | MASS | 7.3-65 | 2025-02-28 | CRAN (R 4.5.0) | | Matrix | 1.7-4 | 2025-08-28 | CRAN (R 4.5.0) | | memoise | 2.0.1 | 2021-11-26 | CRAN (R 4.5.0) | -| mgcv | 1.9-4 | 2025-11-07 | CRAN (R 4.5.0) | | mime | 0.13 | 2025-03-17 | CRAN (R 4.5.0) | | minqa | 1.2.8 | 2024-08-17 | CRAN (R 4.5.0) | | mvtnorm | 1.3-2 | 2024-11-04 | CRAN (R 4.5.2) | @@ -167,7 +169,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | pkgload | 1.5.0 | 2026-02-03 | CRAN (R 4.5.2) | | plyr | 1.8.9 | 2023-10-02 | CRAN (R 4.5.0) | | polyclip | 1.10-7 | 2024-07-23 | CRAN (R 4.5.0) | -| polylabelr | 1.0.0 | 2026-01-19 | CRAN (R 4.5.2) | | pracma | 2.4.6 | 2025-10-22 | CRAN (R 4.5.0) | | processx | 3.8.6 | 2025-02-21 | CRAN (R 4.5.0) | | promises | 1.5.0 | 2025-11-01 | CRAN (R 4.5.0) | @@ -180,6 +181,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.1 | 2026-03-06 | CRAN (R 4.5.2) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | +| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -233,7 +235,9 @@ FreesearchR:::session_data$libs|> knitr::kable() | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | +| utf8 | 1.2.6 | 2025-06-08 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | +| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/llms.txt b/llms.txt index 5e71a167..932ea772 100644 --- a/llms.txt +++ b/llms.txt @@ -167,115 +167,75 @@ No tracking data is sent running the app locally (see above). - [`FreesearchR_palette()`](https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.md) : Use the FreesearchR colors - - [`FreesearchR_theme()`](https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.md) : Custom theme based on unity - - [`add_class_icon()`](https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.md) : Convert class grid column to icon - - [`add_sparkline()`](https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.md) : Add sparkline to datagrid - - [`align_axes()`](https://agdamsbo.github.io/FreesearchR/reference/align_axes.md) : Aligns axes between plots - - [`all_but()`](https://agdamsbo.github.io/FreesearchR/reference/all_but.md) : Select all from vector but - - [`append_column()`](https://agdamsbo.github.io/FreesearchR/reference/append_column.md) : Append a column to a data.frame - - [`append_list()`](https://agdamsbo.github.io/FreesearchR/reference/append_list.md) : Append list with named index - - [`apply_labels()`](https://agdamsbo.github.io/FreesearchR/reference/apply_labels.md) : Apply a named label vector to a data frame - - [`argsstring2list()`](https://agdamsbo.github.io/FreesearchR/reference/argsstring2list.md) : Convert string of arguments to list of arguments - - [`baseline_table()`](https://agdamsbo.github.io/FreesearchR/reference/baseline_table.md) : Print a flexible baseline characteristics table - - [`check_app_version()`](https://agdamsbo.github.io/FreesearchR/reference/check_app_version.md) : Run a startup version check and return a banner UI element - - [`class_icons()`](https://agdamsbo.github.io/FreesearchR/reference/class_icons.md) : Get data class icons - - [`clean_common_axis()`](https://agdamsbo.github.io/FreesearchR/reference/clean_common_axis.md) : Extract and clean axis ranges - - [`clean_date()`](https://agdamsbo.github.io/FreesearchR/reference/clean_date.md) : Attempts at applying uniform date format - - [`clean_sep()`](https://agdamsbo.github.io/FreesearchR/reference/clean_sep.md) : gsub wrapper for piping with default values for separator substituting - - [`collapse_spaces()`](https://agdamsbo.github.io/FreesearchR/reference/collapse_spaces.md) : Substitue spaces/tabs with single space excluding text within quotes - -- [`colorSelectInput()`](https://agdamsbo.github.io/FreesearchR/reference/colorSelectInput.md) - : - - A selectizeInput customized for named vectors of color names supported - by `generate_colors` - - [`columnSelectInput()`](https://agdamsbo.github.io/FreesearchR/reference/columnSelectInput.md) : A selectizeInput customized for data frames with column labels - - [`compare_missings()`](https://agdamsbo.github.io/FreesearchR/reference/compare_missings.md) : Pairwise comparison of missings across covariables - -- [`continuous_colors()`](https://agdamsbo.github.io/FreesearchR/reference/continuous_colors.md) - : Create a Continuous Color Function from a Palette - - [`contrast_text()`](https://agdamsbo.github.io/FreesearchR/reference/contrast_text.md) : Contrast Text Color - - [`corr_pairs_validate()`](https://agdamsbo.github.io/FreesearchR/reference/corr_pairs_validate.md) : Correlation pairs validation - - [`correlation_pairs()`](https://agdamsbo.github.io/FreesearchR/reference/correlation_pairs.md) : Determine significant correlations in the data set - - [`create_column_ui()`](https://agdamsbo.github.io/FreesearchR/reference/create-column.md) [`create_column_server()`](https://agdamsbo.github.io/FreesearchR/reference/create-column.md) [`allowed_operations()`](https://agdamsbo.github.io/FreesearchR/reference/create-column.md) [`modal_create_column()`](https://agdamsbo.github.io/FreesearchR/reference/create-column.md) [`winbox_create_column()`](https://agdamsbo.github.io/FreesearchR/reference/create-column.md) : Create new column - - [`create_baseline()`](https://agdamsbo.github.io/FreesearchR/reference/create_baseline.md) : Create a baseline table - - [`create_log_tics()`](https://agdamsbo.github.io/FreesearchR/reference/create_log_tics.md) : Create summetric log ticks - - [`create_overview_datagrid()`](https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.md) : Create a data overview datagrid - - [`cut_variable_ui()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) [`cut_variable_server()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) [`modal_cut_variable()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) : Module to Convert Numeric to Factor - - [`cut_methods()`](https://agdamsbo.github.io/FreesearchR/reference/cut_methods.md) : Library of cut methods with descriptions - - [`cut_var()`](https://agdamsbo.github.io/FreesearchR/reference/cut_var.md) : Extended cutting function with fall-back to the native base::cut - - [`data_correlations_ui()`](https://agdamsbo.github.io/FreesearchR/reference/data-correlations.md) [`data_correlations_server()`](https://agdamsbo.github.io/FreesearchR/reference/data-correlations.md) : Data correlations evaluation module - - [`data_missings_ui()`](https://agdamsbo.github.io/FreesearchR/reference/data-missings.md) [`data_missings_server()`](https://agdamsbo.github.io/FreesearchR/reference/data-missings.md) : Data correlations evaluation module - - [`data_visuals_ui()`](https://agdamsbo.github.io/FreesearchR/reference/data-plots.md) [`data_visuals_server()`](https://agdamsbo.github.io/FreesearchR/reference/data-plots.md) [`create_plot()`](https://agdamsbo.github.io/FreesearchR/reference/data-plots.md) @@ -289,380 +249,261 @@ No tracking data is sent running the app locally (see above). [`plot_scatter()`](https://agdamsbo.github.io/FreesearchR/reference/data-plots.md) [`plot_violin()`](https://agdamsbo.github.io/FreesearchR/reference/data-plots.md) : Data correlations evaluation module - - [`data_summary_ui()`](https://agdamsbo.github.io/FreesearchR/reference/data-summary.md) [`data_summary_server()`](https://agdamsbo.github.io/FreesearchR/reference/data-summary.md) : Data summary module - - [`data_description()`](https://agdamsbo.github.io/FreesearchR/reference/data_description.md) : Ultra short data dascription - - [`data_summary_gather()`](https://agdamsbo.github.io/FreesearchR/reference/data_summary_gather.md) : Data summary for printing visual summary - - [`data_type()`](https://agdamsbo.github.io/FreesearchR/reference/data_type.md) : Data type assessment. - - [`data_type_filter()`](https://agdamsbo.github.io/FreesearchR/reference/data_type_filter.md) : Filter function to filter data set by variable type - - [`data_types()`](https://agdamsbo.github.io/FreesearchR/reference/data_types.md) : Recognised data types from data_type - - [`default_format_arguments()`](https://agdamsbo.github.io/FreesearchR/reference/default_format_arguments.md) : Defaults qmd formats - - [`default_parsing()`](https://agdamsbo.github.io/FreesearchR/reference/default_parsing.md) : Default data parsing - - [`detect_delimiter()`](https://agdamsbo.github.io/FreesearchR/reference/detect_delimiter.md) : Detect delimiters in string based on allowed delimiters - - [`dim_change_call()`](https://agdamsbo.github.io/FreesearchR/reference/dim_change_call.md) : Dimensions validation - - [`.build_version_alert()`](https://agdamsbo.github.io/FreesearchR/reference/dot-build_version_alert.md) : Build a shinyWidgets::alert() UI element for the version banner - - [`.get_latest_github_version()`](https://agdamsbo.github.io/FreesearchR/reference/dot-get_latest_github_version.md) : Fetch the latest release version from a GitHub repository - - [`.has_internet()`](https://agdamsbo.github.io/FreesearchR/reference/dot-has_internet.md) : Check internet connectivity - - [`.resolve_app_version()`](https://agdamsbo.github.io/FreesearchR/reference/dot-resolve_app_version.md) : Resolve the current app version - - [`drop_empty_event()`](https://agdamsbo.github.io/FreesearchR/reference/drop_empty_event.md) : Drop empty events from REDCap export - - [`expression_string()`](https://agdamsbo.github.io/FreesearchR/reference/expression_string.md) : Deparses expression as string, substitutes native pipe and adds assign - - [`extract_labels()`](https://agdamsbo.github.io/FreesearchR/reference/extract_labels.md) : Extract column labels from a data frame - - [`factor_new_levels_labels()`](https://agdamsbo.github.io/FreesearchR/reference/factor_new_levels_labels.md) : Simple function to apply new levels and/or labels to factor - - [`factorize()`](https://agdamsbo.github.io/FreesearchR/reference/factorize.md) : Factorize variables in data.frame - - [`file_export()`](https://agdamsbo.github.io/FreesearchR/reference/file_export.md) : Title - - [`format_writer()`](https://agdamsbo.github.io/FreesearchR/reference/format_writer.md) : Merges list of named arguments for qmd header generation - -- [`generate_colors()`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md) - : Generate N Colors from a Specified Color Palette - - [`get_data_packages()`](https://agdamsbo.github.io/FreesearchR/reference/get_data_packages.md) : Get packages containing datasets - - [`get_dimensions()`](https://agdamsbo.github.io/FreesearchR/reference/get_dimensions.md) : Extension of the helper function from datamods - - [`get_fun_options()`](https://agdamsbo.github.io/FreesearchR/reference/get_fun_options.md) : Get the function options based on the selected function description - - [`get_label()`](https://agdamsbo.github.io/FreesearchR/reference/get_label.md) : Print label, and if missing print variable name for plots - - [`get_list_elements()`](https://agdamsbo.github.io/FreesearchR/reference/get_list_elements.md) : Subset elements from list of lists - - [`get_plot_options()`](https://agdamsbo.github.io/FreesearchR/reference/get_plot_options.md) : Get the function options based on the selected function description - - [`get_var_icon()`](https://agdamsbo.github.io/FreesearchR/reference/get_var_icon.md) : Easily get variable icon based on data type or class - - [`getfun()`](https://agdamsbo.github.io/FreesearchR/reference/getfun.md) : Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' - - [`gg_theme_export()`](https://agdamsbo.github.io/FreesearchR/reference/gg_theme_export.md) : GGplot default theme for plotting export objects - - [`gg_theme_shiny()`](https://agdamsbo.github.io/FreesearchR/reference/gg_theme_shiny.md) : GGplot default theme for plotting in Shiny - - [`ggeulerr()`](https://agdamsbo.github.io/FreesearchR/reference/ggeulerr.md) : Area proportional venn diagrams - - [`grepl_fix()`](https://agdamsbo.github.io/FreesearchR/reference/grepl_fix.md) : Matches pattern to vector based on match type - - [`if_not_missing()`](https://agdamsbo.github.io/FreesearchR/reference/if_not_missing.md) : Return if available - - [`import_delim()`](https://agdamsbo.github.io/FreesearchR/reference/import-file-type.md) [`import_xls()`](https://agdamsbo.github.io/FreesearchR/reference/import-file-type.md) [`import_ods()`](https://agdamsbo.github.io/FreesearchR/reference/import-file-type.md) [`import_dta()`](https://agdamsbo.github.io/FreesearchR/reference/import-file-type.md) [`import_rds()`](https://agdamsbo.github.io/FreesearchR/reference/import-file-type.md) : Wrapper to ease data file import - - [`import_file_ui()`](https://agdamsbo.github.io/FreesearchR/reference/import-file.md) [`import_file_server()`](https://agdamsbo.github.io/FreesearchR/reference/import-file.md) : Import data from a file - - [`import_file_demo_app()`](https://agdamsbo.github.io/FreesearchR/reference/import-file_module.md) : Test app for the import_file module - - [`import_globalenv_ui()`](https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.md) [`import_globalenv_server()`](https://agdamsbo.github.io/FreesearchR/reference/import-globalenv.md) : Import data from an Environment - - [`index_embed()`](https://agdamsbo.github.io/FreesearchR/reference/index_embed.md) : Split vector by an index and embed addition - - [`is_any_class()`](https://agdamsbo.github.io/FreesearchR/reference/is_any_class.md) : Test class - - [`is_consecutive()`](https://agdamsbo.github.io/FreesearchR/reference/is_consecutive.md) : Checks if elements in vector are equally spaced as indication of ID - - [`is_datetime()`](https://agdamsbo.github.io/FreesearchR/reference/is_datetime.md) : Test is date/datetime/time - - [`is_identical_to_previous()`](https://agdamsbo.github.io/FreesearchR/reference/is_identical_to_previous.md) : Test if element is identical to the previous - - [`is_splittable()`](https://agdamsbo.github.io/FreesearchR/reference/is_splittable.md) : Determine if any variable in data frame character and contains recognized delimiters - - [`is_valid_redcap_url()`](https://agdamsbo.github.io/FreesearchR/reference/is_valid_redcap_url.md) : Test if url is valid format for REDCap API - - [`is_valid_token()`](https://agdamsbo.github.io/FreesearchR/reference/is_valid_token.md) : Validate REDCap token - - [`label_report()`](https://agdamsbo.github.io/FreesearchR/reference/label_report.md) : Print a tidy summary of column labels - - [`landing_page_ui()`](https://agdamsbo.github.io/FreesearchR/reference/landing_page_ui.md) : Tag list of elements for the FreesearchR landing page - - [`launch_FreesearchR()`](https://agdamsbo.github.io/FreesearchR/reference/launch_FreesearchR.md) : Easily launch the FreesearchR app - - [`limit_data_size()`](https://agdamsbo.github.io/FreesearchR/reference/limit_data_size.md) : Limit the allowed data set size by number of cells - - [`limit_log()`](https://agdamsbo.github.io/FreesearchR/reference/limit_log.md) : Easily round log scale limits for nice plots - - [`line_break()`](https://agdamsbo.github.io/FreesearchR/reference/line_break.md) : Line breaking at given number of characters for nicely plotting labels - - [`list_pkg_data()`](https://agdamsbo.github.io/FreesearchR/reference/list_pkg_data.md) : List dataset contained in a package - - [`make_validation()`](https://agdamsbo.github.io/FreesearchR/reference/make_validation.md) : Create validation data.frame - - [`make_validation_alerts()`](https://agdamsbo.github.io/FreesearchR/reference/make_validation_alerts.md) : Create alert from validation data.frame - - [`mcar_validate()`](https://agdamsbo.github.io/FreesearchR/reference/mcar_validate.md) : MCAR validation based on a gtsummary table bady - - [`merge_expression()`](https://agdamsbo.github.io/FreesearchR/reference/merge_expression.md) : Merge list of expressions - - [`merge_long()`](https://agdamsbo.github.io/FreesearchR/reference/merge_long.md) : Wrapper to pivot gtsummary table data to long for plotting - - [`missing_fraction()`](https://agdamsbo.github.io/FreesearchR/reference/missing_fraction.md) : Get missingsness fraction - - [`missings_logic_across()`](https://agdamsbo.github.io/FreesearchR/reference/missings_logic_across.md) : Converting all variables to logicals by missing status - - [`missings_validate()`](https://agdamsbo.github.io/FreesearchR/reference/missings_validate.md) : Validate function of missingness in data - - [`modify_qmd()`](https://agdamsbo.github.io/FreesearchR/reference/modify_qmd.md) : Wrapper to modify quarto file to render specific formats - - [`names2val()`](https://agdamsbo.github.io/FreesearchR/reference/names2val.md) : Set values as names and names as values - - [`obs_filter_validate()`](https://agdamsbo.github.io/FreesearchR/reference/obs_filter_validate.md) : Observations filter test wrapper - - [`overview_vars()`](https://agdamsbo.github.io/FreesearchR/reference/overview_vars.md) : Create a data overview data.frame ready for sparklines - - [`pipe_string()`](https://agdamsbo.github.io/FreesearchR/reference/pipe_string.md) : Reduce character vector with the native pipe operator or character string - - [`plot(`*``*`)`](https://agdamsbo.github.io/FreesearchR/reference/plot.tbl_regression.md) : Regression coef plot from gtsummary. Slightly modified to pass on arguments - - [`plot_euler()`](https://agdamsbo.github.io/FreesearchR/reference/plot_euler.md) : Easily plot euler diagrams - - [`plot_euler_single()`](https://agdamsbo.github.io/FreesearchR/reference/plot_euler_single.md) : Easily plot single euler diagrams - - [`plot_sankey_single()`](https://agdamsbo.github.io/FreesearchR/reference/plot_sankey_single.md) : Beautiful sankey plot - - [`possible_functions()`](https://agdamsbo.github.io/FreesearchR/reference/possible_functions.md) : Get possible regression models - - [`possible_plots()`](https://agdamsbo.github.io/FreesearchR/reference/possible_plots.md) : Get possible regression models - - [`read_input()`](https://agdamsbo.github.io/FreesearchR/reference/read_input.md) : Flexible file import based on extension - - [`m_redcap_readUI()`](https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.md) [`m_redcap_readServer()`](https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.md) [`redcap_demo_app()`](https://agdamsbo.github.io/FreesearchR/reference/redcap_read_shiny_module.md) : Shiny module to browser and export REDCap data - - [`regression_model()`](https://agdamsbo.github.io/FreesearchR/reference/regression_model.md) [`regression_model_uv()`](https://agdamsbo.github.io/FreesearchR/reference/regression_model.md) [`regression_model_list()`](https://agdamsbo.github.io/FreesearchR/reference/regression_model.md) [`regression_model_uv_list()`](https://agdamsbo.github.io/FreesearchR/reference/regression_model.md) : Create a regression model programatically - - [`regression_table()`](https://agdamsbo.github.io/FreesearchR/reference/regression_table.md) : Create table of regression model - - [`regression_table_create()`](https://agdamsbo.github.io/FreesearchR/reference/regression_table_create.md) : Create regression summary table - - [`remove_empty_attr()`](https://agdamsbo.github.io/FreesearchR/reference/remove_empty_attr.md) : Remove empty/NA attributes - - [`remove_empty_cols()`](https://agdamsbo.github.io/FreesearchR/reference/remove_empty_cols.md) : Removes columns with completenes below cutoff - - [`remove_nested_list()`](https://agdamsbo.github.io/FreesearchR/reference/remove_nested_list.md) : Very simple function to remove nested lists, like when uploading .rds - - [`repeated_instruments()`](https://agdamsbo.github.io/FreesearchR/reference/repeated_instruments.md) : Get names of repeated instruments - - [`restore_labels()`](https://agdamsbo.github.io/FreesearchR/reference/restore_labels.md) : Restore column labels using a reference data frame - -- [`scale_fill_generate()`](https://agdamsbo.github.io/FreesearchR/reference/scale_fill_generate.md) - [`scale_color_generate()`](https://agdamsbo.github.io/FreesearchR/reference/scale_fill_generate.md) - : Discrete and Continuous Fill Scale Using generate_colors - - [`selectInputIcon()`](https://agdamsbo.github.io/FreesearchR/reference/selectInputIcon.md) : Create a select input control with icon(s) - - [`separate_string()`](https://agdamsbo.github.io/FreesearchR/reference/separate_string.md) : Separate string wide or long - - [`set_column_label()`](https://agdamsbo.github.io/FreesearchR/reference/set_column_label.md) : (Re)label columns in data.frame - - [`show_data()`](https://agdamsbo.github.io/FreesearchR/reference/show_data.md) : Display a table in a window - - [`simple_snake()`](https://agdamsbo.github.io/FreesearchR/reference/simple_snake.md) : Simplified version of the snakecase packages to_snake_case - - [`sort_by()`](https://agdamsbo.github.io/FreesearchR/reference/sort_by.md) : Drop-in replacement for the base::sort_by with option to remove NAs - - [`specify_qmd_format()`](https://agdamsbo.github.io/FreesearchR/reference/specify_qmd_format.md) : Specify format arguments to include in qmd header/frontmatter - - [`string_split_ui()`](https://agdamsbo.github.io/FreesearchR/reference/split-string.md) [`string_split_server()`](https://agdamsbo.github.io/FreesearchR/reference/split-string.md) [`modal_string_split()`](https://agdamsbo.github.io/FreesearchR/reference/split-string.md) : String split module based on tidyr::separate\_ - - [`subset_types()`](https://agdamsbo.github.io/FreesearchR/reference/subset_types.md) : Easily subset by data type function - - [`supported_functions()`](https://agdamsbo.github.io/FreesearchR/reference/supported_functions.md) : Implemented functions - - [`supported_plots()`](https://agdamsbo.github.io/FreesearchR/reference/supported_plots.md) : Implemented functions - - [`symmetrical_scale_x_log10()`](https://agdamsbo.github.io/FreesearchR/reference/symmetrical_scale_x_log10.md) : Ensure symmetrical plot around 1 on a logarithmic x scale for ratio plots - - [`tbl_merge()`](https://agdamsbo.github.io/FreesearchR/reference/tbl_merge.md) : A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. - - [`type_icons()`](https://agdamsbo.github.io/FreesearchR/reference/type_icons.md) : Get data type icons - - [`ui_elements()`](https://agdamsbo.github.io/FreesearchR/reference/ui_elements.md) : FreesearchR UI elements list - - [`unique_names()`](https://agdamsbo.github.io/FreesearchR/reference/unique_names.md) : Make unique variable names - - [`unique_short()`](https://agdamsbo.github.io/FreesearchR/reference/unique_short.md) : Create unique short names of character vector items based on index - - [`update_factor_ui()`](https://agdamsbo.github.io/FreesearchR/reference/update-factor.md) [`update_factor_server()`](https://agdamsbo.github.io/FreesearchR/reference/update-factor.md) [`modal_update_factor()`](https://agdamsbo.github.io/FreesearchR/reference/update-factor.md) [`winbox_update_factor()`](https://agdamsbo.github.io/FreesearchR/reference/update-factor.md) : Module to Reorder the Levels of a Factor Variable - - [`update_variables_ui()`](https://agdamsbo.github.io/FreesearchR/reference/update-variables.md) [`update_variables_server()`](https://agdamsbo.github.io/FreesearchR/reference/update-variables.md) : Select, rename and convert variables - - [`update_variables_datagrid()`](https://agdamsbo.github.io/FreesearchR/reference/update_variables_datagrid.md) : Modified from the datamods pacakge - - [`validation_ui()`](https://agdamsbo.github.io/FreesearchR/reference/validation.md) [`validation_server()`](https://agdamsbo.github.io/FreesearchR/reference/validation.md) : Validation module - - [`validation_lib()`](https://agdamsbo.github.io/FreesearchR/reference/validation_lib.md) : Validation library - - [`vars_filter_validate()`](https://agdamsbo.github.io/FreesearchR/reference/vars_filter_validate.md) : Variable filter test wrapper - - [`vectorSelectInput()`](https://agdamsbo.github.io/FreesearchR/reference/vectorSelectInput.md) : A selectizeInput customized for named vectors - - [`vertical_stacked_bars()`](https://agdamsbo.github.io/FreesearchR/reference/vertical_stacked_bars.md) : Vertical stacked bar plot wrapper - - [`visual_summary_ui()`](https://agdamsbo.github.io/FreesearchR/reference/visual-summary.md) [`visual_summary_server()`](https://agdamsbo.github.io/FreesearchR/reference/visual-summary.md) [`modal_visual_summary()`](https://agdamsbo.github.io/FreesearchR/reference/visual-summary.md) [`missings_apex_plot()`](https://agdamsbo.github.io/FreesearchR/reference/visual-summary.md) [`visual_summary()`](https://agdamsbo.github.io/FreesearchR/reference/visual-summary.md) : Data correlations evaluation module - - [`wide2long()`](https://agdamsbo.github.io/FreesearchR/reference/wide2long.md) : Alternative pivoting method for easily pivoting based on name pattern - - [`with_labels()`](https://agdamsbo.github.io/FreesearchR/reference/with_labels.md) : Evaluate an expression while preserving column labels - - [`wrap_plot_list()`](https://agdamsbo.github.io/FreesearchR/reference/wrap_plot_list.md) : Wrapping - - [`write_quarto()`](https://agdamsbo.github.io/FreesearchR/reference/write_quarto.md) : Wrapper to save data in RDS, load into specified qmd and render diff --git a/news/index.html b/news/index.html index 533c1656..74c3fcd7 100644 --- a/news/index.html +++ b/news/index.html @@ -43,9 +43,8 @@

FreesearchR 26.3.4

-

NEW Color select for plotting across all plots for even more option. Ten palettes have been chosen, to provide varied and interpretable options. The selector will always show a preview of four colors.

NEW Added app version check against latest release on GitHub. Only runs if internet connection present. No other polling.

-

NEW Added a “Missing” level to the sankey plot function and adjusted the label font size. And fixed support for dichotomous data.

+

NEW Added a “Missing” level to the sankey plot function and adjusted the label font size.

FreesearchR 26.3.3

diff --git a/news/index.md b/news/index.md index 65b0cf74..b006c92b 100644 --- a/news/index.md +++ b/news/index.md @@ -2,15 +2,11 @@ ## FreesearchR 26.3.4 -*NEW* Color select for plotting across all plots for even more option. -Ten palettes have been chosen, to provide varied and interpretable -options. The selector will always show a preview of four colors. - *NEW* Added app version check against latest release on GitHub. Only runs if internet connection present. No other polling. *NEW* Added a “Missing” level to the sankey plot function and adjusted -the label font size. And fixed support for dichotomous data. +the label font size. ## FreesearchR 26.3.3 diff --git a/pkgdown.yml b/pkgdown.yml index 378d6978..967898cd 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: missingness: missingness.html session: session.html visuals: visuals.html -last_built: 2026-03-24T13:14Z +last_built: 2026-03-23T13:48Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/colorSelectInput.html b/reference/colorSelectInput.html deleted file mode 100644 index aad458b3..00000000 --- a/reference/colorSelectInput.html +++ /dev/null @@ -1,159 +0,0 @@ - -A selectizeInput customized for named vectors of color names supported by generate_colors — colorSelectInput • FreesearchR - Skip to contents - - -
-
-
-

A selectizeInput customized for named vectors of color names supported by generate_colors

- Source: R/custom_SelectInput.R -
colorSelectInput.Rd
-
- -
-

A selectizeInput customized for named vectors of color names supported by -generate_colors

-
- -
-

Usage

- 
colorSelectInput(
-  inputId,
-  label,
-  choices,
-  selected = "",
-  previews = 4,
-  ...,
-  placeholder = ""
-)
-
- -
-

Arguments

- - -
inputId
-

passed to selectizeInput

- - -
label
-

passed to selectizeInput

- - -
choices
-

A named vector from which fields should be populated

- - -
selected
-

default selection

- - -
previews
-

number of preview colors. Default is 4.

- - -
...
-

passed to selectizeInput

- - -
placeholder
-

passed to selectizeInput options

- - -
onInitialize
-

passed to selectizeInput options

- -
-
-

Value

-

a selectizeInput dropdown element

-
- -
-

Examples

- 
if (shiny::interactive()) {
-top_palettes <- c(
-"Perceptual (blue-yellow)"   = "viridis",
-"Perceptual (fire)"          = "plasma",
-"Colour-blind friendly"      = "Okabe-Ito",
-"Qualitative (bold)"         = "Dark 2",
-"Qualitative (paired)"       = "Paired",
-"Sequential (blues)"         = "Blues",
-"Diverging (red-blue)"       = "RdBu",
-"Tableau style"              = "Tableau 10",
-"Pastel"                     = "Pastel 1",
-"Rainbow"                    = "rainbow"
-)
-  shinyApp(
-    ui = fluidPage(
-    titlePanel("Color Palette Select Test"),
-    colorSelectInput(
-      inputId  = "palette",
-      label    = "Color palette",
-      choices  = top_palettes,
-      selected = "viridis"
-    ),
-    verbatimTextOutput("selected")
-    ),
-    server = function(input, output, session) {
-    output$selected <- renderPrint(input$palette)
-    }
-  )
-}
-#> Error: 'interactive' is not an exported object from 'namespace:shiny'
-
-
-
- - -
-

Site built with pkgdown 2.2.0.

-
- -
-

Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

-
- -
- - - - - - - diff --git a/reference/colorSelectInput.md b/reference/colorSelectInput.md deleted file mode 100644 index d92e9797..00000000 --- a/reference/colorSelectInput.md +++ /dev/null @@ -1,100 +0,0 @@ -# A selectizeInput customized for named vectors of color names supported by [`generate_colors`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md) - -A selectizeInput customized for named vectors of color names supported -by -[`generate_colors`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md) - -## Usage - -``` r -colorSelectInput( - inputId, - label, - choices, - selected = "", - previews = 4, - ..., - placeholder = "" -) -``` - -## Arguments - -- inputId: - - passed to - [`selectizeInput`](https://rdrr.io/pkg/shiny/man/selectInput.html) - -- label: - - passed to - [`selectizeInput`](https://rdrr.io/pkg/shiny/man/selectInput.html) - -- choices: - - A named `vector` from which fields should be populated - -- selected: - - default selection - -- previews: - - number of preview colors. Default is 4. - -- ...: - - passed to - [`selectizeInput`](https://rdrr.io/pkg/shiny/man/selectInput.html) - -- placeholder: - - passed to - [`selectizeInput`](https://rdrr.io/pkg/shiny/man/selectInput.html) - options - -- onInitialize: - - passed to - [`selectizeInput`](https://rdrr.io/pkg/shiny/man/selectInput.html) - options - -## Value - -a [`selectizeInput`](https://rdrr.io/pkg/shiny/man/selectInput.html) -dropdown element - -## Examples - -``` r -if (shiny::interactive()) { -top_palettes <- c( -"Perceptual (blue-yellow)" = "viridis", -"Perceptual (fire)" = "plasma", -"Colour-blind friendly" = "Okabe-Ito", -"Qualitative (bold)" = "Dark 2", -"Qualitative (paired)" = "Paired", -"Sequential (blues)" = "Blues", -"Diverging (red-blue)" = "RdBu", -"Tableau style" = "Tableau 10", -"Pastel" = "Pastel 1", -"Rainbow" = "rainbow" -) - shinyApp( - ui = fluidPage( - titlePanel("Color Palette Select Test"), - colorSelectInput( - inputId = "palette", - label = "Color palette", - choices = top_palettes, - selected = "viridis" - ), - verbatimTextOutput("selected") - ), - server = function(input, output, session) { - output$selected <- renderPrint(input$palette) - } - ) -} -#> Error: 'interactive' is not an exported object from 'namespace:shiny' -``` diff --git a/reference/continuous_colors.html b/reference/continuous_colors.html deleted file mode 100644 index 99e0d347..00000000 --- a/reference/continuous_colors.html +++ /dev/null @@ -1,129 +0,0 @@ - -Create a Continuous Color Function from a Palette — continuous_colors • FreesearchR - Skip to contents - - -
-
-
-

Create a Continuous Color Function from a Palette

- Source: R/generate_colors.R -
continuous_colors.Rd
-
- -
-

Wraps generate_colors into a function that accepts a value -between 0 and 1 and returns the corresponding color. Useful for mapping -continuous variables to colors.

-
- -
-

Usage

- 
continuous_colors(palette = "viridis", n = 256, ...)
-
- -
-

Arguments

- - -
palette
-

Passed directly to generate_colors(). Either a palette -name string or a function.

- - -
n
-

integer. Resolution of the underlying color ramp — higher -values give smoother gradients. Defaults to 256.

- - -
...
-

Additional arguments passed to generate_colors().

- -
-
-

Value

-

A function that takes a numeric vector of values in [0, 1] -and returns a character vector of hex colors.

-
-
-

See also

-

generate_colors()

-
- -
-

Examples

- 
pal <- continuous_colors("viridis")
-pal(0)    # first color
-#> [1] "#440154"
-pal(1)    # last color
-#> [1] "#FDE725"
-pal(0.5)  # midpoint
-#> [1] "#21908C"
-
-# Map a continuous variable to colors
-values <- seq(0, 1, length.out = 10)
-pal(values)
-#>  [1] "#440154" "#482878" "#3E4989" "#31688E" "#25828E" "#1E9D89" "#35B779"
-#>  [8] "#6CCD59" "#B4DD2B" "#FDE725"
-
-# Works with any palette generate_colors() accepts
-pal <- continuous_colors("plasma", direction = -1)
-pal <- continuous_colors(\(n) hcl.colors(n, palette = "Blue-Red"))
-
-
-
-
- - -
-

Site built with pkgdown 2.2.0.

-
- -
-

Developed by Andreas Gammelgaard Damsbo. Provided without any warranty.

-
- -
- - - - - - - diff --git a/reference/continuous_colors.md b/reference/continuous_colors.md deleted file mode 100644 index 473debdf..00000000 --- a/reference/continuous_colors.md +++ /dev/null @@ -1,61 +0,0 @@ -# Create a Continuous Color Function from a Palette - -Wraps -[`generate_colors`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md) -into a function that accepts a value between 0 and 1 and returns the -corresponding color. Useful for mapping continuous variables to colors. - -## Usage - -``` r -continuous_colors(palette = "viridis", n = 256, ...) -``` - -## Arguments - -- palette: - - Passed directly to - [`generate_colors()`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md). - Either a palette name string or a function. - -- n: - - `integer`. Resolution of the underlying color ramp — higher values - give smoother gradients. Defaults to 256. - -- ...: - - Additional arguments passed to - [`generate_colors()`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md). - -## Value - -A function that takes a numeric vector of values in `[0, 1]` and returns -a character vector of hex colors. - -## See also - -[`generate_colors()`](https://agdamsbo.github.io/FreesearchR/reference/generate_colors.md) - -## Examples - -``` r -pal <- continuous_colors("viridis") -pal(0) # first color -#> [1] "#440154" -pal(1) # last color -#> [1] "#FDE725" -pal(0.5) # midpoint -#> [1] "#21908C" - -# Map a continuous variable to colors -values <- seq(0, 1, length.out = 10) -pal(values) -#> [1] "#440154" "#482878" "#3E4989" "#31688E" "#25828E" "#1E9D89" "#35B779" -#> [8] "#6CCD59" "#B4DD2B" "#FDE725" - -# Works with any palette generate_colors() accepts -pal <- continuous_colors("plasma", direction = -1) -pal <- continuous_colors(\(n) hcl.colors(n, palette = "Blue-Red")) -``` diff --git a/reference/data-plots-1.png b/reference/data-plots-1.png index f03d4db3..82347fed 100644 Binary files a/reference/data-plots-1.png and b/reference/data-plots-1.png differ diff --git a/reference/data-plots-10.png b/reference/data-plots-10.png index 64e6c08e..bb038813 100644 Binary files a/reference/data-plots-10.png and b/reference/data-plots-10.png differ diff --git a/reference/data-plots-11.png b/reference/data-plots-11.png index bb038813..505c10cc 100644 Binary files a/reference/data-plots-11.png and b/reference/data-plots-11.png differ diff --git a/reference/data-plots-12.png b/reference/data-plots-12.png index e6714b3a..05ba7c57 100644 Binary files a/reference/data-plots-12.png and b/reference/data-plots-12.png differ diff --git a/reference/data-plots-13.png b/reference/data-plots-13.png index 05ba7c57..6cd1edf5 100644 Binary files a/reference/data-plots-13.png and b/reference/data-plots-13.png differ diff --git a/reference/data-plots-14.png b/reference/data-plots-14.png index 6cd1edf5..cfc7dfc6 100644 Binary files a/reference/data-plots-14.png and b/reference/data-plots-14.png differ diff --git a/reference/data-plots-15.png b/reference/data-plots-15.png index cfc7dfc6..7ad7b167 100644 Binary files a/reference/data-plots-15.png and b/reference/data-plots-15.png differ diff --git a/reference/data-plots-16.png b/reference/data-plots-16.png index 7ad7b167..5377240c 100644 Binary files a/reference/data-plots-16.png and b/reference/data-plots-16.png differ diff --git a/reference/data-plots-17.png b/reference/data-plots-17.png index bf1122de..58808c8b 100644 Binary files a/reference/data-plots-17.png and b/reference/data-plots-17.png differ diff --git a/reference/data-plots-18.png b/reference/data-plots-18.png index 58808c8b..ae1d5eed 100644 Binary files a/reference/data-plots-18.png and b/reference/data-plots-18.png differ diff --git a/reference/data-plots-19.png b/reference/data-plots-19.png deleted file mode 100644 index b4b50302..00000000 Binary files a/reference/data-plots-19.png and /dev/null differ diff --git a/reference/data-plots-2.png b/reference/data-plots-2.png index f50a2236..15c89b57 100644 Binary files a/reference/data-plots-2.png and b/reference/data-plots-2.png differ diff --git a/reference/data-plots-20.png b/reference/data-plots-20.png deleted file mode 100644 index b5563360..00000000 Binary files a/reference/data-plots-20.png and /dev/null differ diff --git a/reference/data-plots-6.png b/reference/data-plots-6.png index 183524b6..44127527 100644 Binary files a/reference/data-plots-6.png and b/reference/data-plots-6.png differ diff --git a/reference/data-plots-7.png b/reference/data-plots-7.png index f34a6002..25a86227 100644 Binary files a/reference/data-plots-7.png and b/reference/data-plots-7.png differ diff --git a/reference/data-plots-8.png b/reference/data-plots-8.png index 25a86227..4a5ac605 100644 Binary files a/reference/data-plots-8.png and b/reference/data-plots-8.png differ diff --git a/reference/data-plots-9.png b/reference/data-plots-9.png index 387dbbd9..584811d6 100644 Binary files a/reference/data-plots-9.png and b/reference/data-plots-9.png differ diff --git a/reference/data-plots.html b/reference/data-plots.html index ac247fb3..5ddc8172 100644 --- a/reference/data-plots.html +++ b/reference/data-plots.html @@ -9,7 +9,7 @@ Plot nice ridge plot Readying data for sankey plot Beautiful sankey plot with option to split by a tertiary group Beautiful violin plot -Beautiful violin plot"> +Beatiful violin plot"> Skip to contents @@ -73,42 +73,32 @@ Beautiful violin plot">

Usage

data_visuals_ui(id, tab_title = "Plots", ...)
 
-data_visuals_server(
-  id,
-  data,
-  palettes = c(`Perceptual (blue-yellow)` = "viridis", `Perceptual (fire)` = "plasma",
-    `Colour-blind friendly` = "Okabe-Ito", `Qualitative (bold)` = "Dark 2",
-    `Qualitative (paired)` = "Paired", `Sequential (blues)` = "Blues",
-    `Diverging (red-blue)` = "RdBu", `Tableau style` = "Tableau 10", Pastel = "Pastel 1",
-    Rainbow = "rainbow"),
-  ...
-)
+data_visuals_server(id, data, ...)
 
-create_plot(data, type, pri, sec, ter = NULL, color.palette = "viridis", ...)
+create_plot(data, type, pri, sec, ter = NULL, ...)
 
 plot_bar_single(
   data,
   pri,
   sec = NULL,
   style = c("stack", "dodge", "fill"),
-  max_level = 30,
-  color.palette = "viridis"
+  max_level = 30
 )
 
-plot_box(data, pri, sec, ter = NULL, color.palette = "viridis", ...)
+plot_box(data, pri, sec, ter = NULL, ...)
 
-plot_box_single(data, pri, sec = NULL, seed = 2103, color.palette = "viridis")
+plot_box_single(data, pri, sec = NULL, seed = 2103)
 
-plot_hbars(data, pri, sec, ter = NULL, color.palette = "viridis")
+plot_hbars(data, pri, sec, ter = NULL)
 
-plot_ridge(data, x, y, z = NULL, color.palette = "viridis", ...)
+plot_ridge(data, x, y, z = NULL, ...)
 
 sankey_ready(data, pri, sec, numbers = "count", ...)
 
@@ -119,16 +109,12 @@ Beautiful violin plot">= NULL,
   color.group = "pri",
   colors = NULL,
-  color.palette = "viridis",
-  default.color = "#2986cc",
-  box.color = "#1E4B66",
-  na.color = "grey80",
   missing.level = "Missing"
 )
 
-plot_scatter(data, pri, sec, ter = NULL, color.palette = "viridis")
+plot_scatter(data, pri, sec, ter = NULL)
 
-plot_violin(data, pri, sec, ter = NULL, color.palette = "viridis")
+plot_violin(data, pri, sec, ter = NULL)
@@ -163,10 +149,6 @@ Beautiful violin plot">color.palette -

choose color palette. See plot_colors for support.

- -
style

barplot style passed to geom_bar position argument. One of c("stack", "dodge", "fill")

@@ -750,11 +732,10 @@ One of c("stack", "dodge", "fill")

#> list() #> #> $plot_env -#> <environment: 0x5578ebf42900> +#> <environment: 0x55fda1fb5b88> #> #> $code -#> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL, -#> color.palette = "viridis") +#> FreesearchR::plot_violin(pri = "mpg", sec = "cyl", ter = NULL) #> mtcars |> dplyr::mutate(cyl = factor(cyl), am = factor(am)) |> @@ -763,7 +744,7 @@ One of c("stack", "dodge", "fill")

mtcars |> dplyr::mutate(cyl = factor(cyl), am = factor(am)) |> - plot_bar_single(pri = "cyl", style = "stack",color.palette="turbo") + plot_bar_single(pri = "cyl", style = "stack") mtcars |> plot_box(pri = "mpg", sec = "gear") @@ -779,49 +760,31 @@ One of c("stack", "dodge", "fill")

#> Error in plot_box(default_parsing(mtcars), pri = "mpg", sec = "cyl", ter = "gear", axis.font.family = "mono"): object 'i18n' not found mtcars |> plot_box_single("mpg") -mtcars |> plot_box_single("mpg","cyl",color.palette="Blues") +mtcars |> plot_box_single("mpg","cyl") -stRoke::trial |> plot_box_single("age","active",color.palette="Blues") - gtsummary::trial |> plot_box_single("age","trt") #> Warning: Removed 11 rows containing non-finite outside the scale range #> (`stat_boxplot()`). #> Warning: Removed 11 rows containing missing values or values outside the scale range #> (`geom_point()`). - + mtcars |> plot_hbars(pri = "carb", sec = "cyl") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale. -#> Error in ggplot2::geom_text(data = .x$rectData[which(.x$rectData$n > 0), ], size = t.size, fontface = "plain", ggplot2::aes(x = group, y = p_prev + 0.49 * p, color = contrast_cut, label = glue::glue(label.str))): Problem while computing aesthetics. -#> ℹ Error occurred in the 3rd layer. -#> Caused by error in `check_aesthetics()`: -#> ! Aesthetics must be either length 1 or the same as the data (9). -#> ✖ Fix the following mappings: `colour`. + mtcars |> plot_hbars(pri = "carb", sec = "cyl", ter="am") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale. -#> Error in ggplot2::geom_text(data = .x$rectData[which(.x$rectData$n > 0), ], size = t.size, fontface = "plain", ggplot2::aes(x = group, y = p_prev + 0.49 * p, color = contrast_cut, label = glue::glue(label.str))): Problem while computing aesthetics. -#> ℹ Error occurred in the 3rd layer. -#> Caused by error in `check_aesthetics()`: -#> ! Aesthetics must be either length 1 or the same as the data (13). -#> ✖ Fix the following mappings: `colour`. -mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Blues") -#> Scale for fill is already present. -#> Adding another scale for fill, which will replace the existing scale. -mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Magma") +mtcars |> plot_hbars(pri = "carb", sec = NULL) #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale. -mtcars |> plot_hbars(pri = "carb", sec = NULL,color.palette="Viridis") -#> Scale for fill is already present. -#> Adding another scale for fill, which will replace the existing scale. - mtcars |> default_parsing() |> plot_ridge(x = "mpg", y = "cyl") #> Picking joint bandwidth of 1.38 - + mtcars |> plot_ridge(x = "mpg", y = "cyl", z = "gear") #> Picking joint bandwidth of 1.52 #> Warning: The following aesthetics were dropped during statistical transformation: y and @@ -901,42 +864,38 @@ One of c("stack", "dodge", "fill")

ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey("first", "last") #> Loading required package: ggplot2 - + ds |> plot_sankey("first", "last", color.group = "sec") - + ds |> plot_sankey("first", "last", ter = "g", color.group = "sec") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. - + mtcars |> default_parsing() |> plot_sankey("cyl", "gear", "am", color.group = "pri") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. - + ## In this case, the last plot as the secondary variable in wrong order ## Dont know why... mtcars |> default_parsing() |> - plot_sankey("cyl", "gear", "vs", color.group = "pri",color.palette="inferno") + plot_sankey("cyl", "gear", "vs", color.group = "pri") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. - + + + # stRoke::trial |> plot_sankey("mrs_1", "mrs_6") mtcars |> plot_scatter(pri = "mpg", sec = "wt") #> Ignoring unknown labels: #> • legend.title : "" - -mtcars |> plot_scatter(pri = "mpg", sec = "wt",ter="carb") -#> Ignoring unknown labels: -#> • legend.title : "" - -mtcars |> plot_violin(pri = "mpg", sec = "cyl") - -mtcars |> plot_violin(pri = "mpg", sec = "cyl", ter = "gear", color.palette="Blues") -#> Error in plot_violin(mtcars, pri = "mpg", sec = "cyl", ter = "gear", color.palette = "Blues"): object 'i18n' not found + +mtcars |> plot_violin(pri = "mpg", sec = "cyl", ter = "gear") +#> Error in plot_violin(mtcars, pri = "mpg", sec = "cyl", ter = "gear"): object 'i18n' not found