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CRAN (R 4.4.1)
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-
shinybusy
0.3.3
2024-03-09
CRAN (R 4.4.0)
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shinyjs
2.1.0
2021-12-23
CRAN (R 4.4.0)
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shinyTime
1.0.3
2022-08-19
CRAN (R 4.4.0)
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shinyWidgets
0.9.0
2025-02-21
CRAN (R 4.4.1)
+
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stringi
1.8.7
@@ -1260,9 +1344,21 @@ packages and the latest build info.
CRAN (R 4.4.0)
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CRAN (R 4.4.1)
@@ -1273,21 +1369,21 @@ packages and the latest build info.
textshaping
-1.0.1
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CRAN (R 4.4.1)
thematic
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tibble
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tidyr
@@ -1351,8 +1447,8 @@ packages and the latest build info.
V8
-6.0.4
-2025-06-04
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CRAN (R 4.4.1)
@@ -1411,8 +1507,8 @@ packages and the latest build info.
zip
-2.3.3
-2025-05-13
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CRAN (R 4.4.1)
diff --git a/articles/visuals.html b/articles/visuals.html
index adcb144d..6672e840 100644
--- a/articles/visuals.html
+++ b/articles/visuals.html
@@ -73,7 +73,7 @@
diff --git a/authors.html b/authors.html
index 49b64f47..a276b3e5 100644
--- a/authors.html
+++ b/authors.html
@@ -59,7 +59,7 @@
diff --git a/SESSION.html b/SESSION.html
index d0b36fca..7c34604e 100644
--- a/SESSION.html
+++ b/SESSION.html
@@ -38,12 +38,12 @@
diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html
index 804ae5cc..2ac7aa7a 100644
--- a/articles/FreesearchR.html
+++ b/articles/FreesearchR.html
@@ -73,7 +73,7 @@
@@ -82,43 +82,47 @@
@@ -92,10 +92,9 @@
| ——————————– R environment ——————————— | -
|---|
| |setting |value | |:———–|:——————————————| |version |R version 4.4.1 (2024-06-14) | |os |macOS 15.3.1 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2025-07-22 | |rstudio |2025.05.0+496 Mariposa Orchid (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |25.7.2.250722 | | +
| |setting |value | |:———–|:——————————————| |version |R version 4.4.1 (2024-06-14) | |os |macOS 15.3.1 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2025-07-03 | |rstudio |2025.05.0+496 Mariposa Orchid (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |25.7.2.250703 | |
———————————– packages ———————————–
| package | @@ -79,8 +79,8 @@2015-07-28 | CRAN (R 4.4.1) | ||||
|---|---|---|---|---|---|---|
| bayestestR | -0.16.1 | -2025-07-01 | +0.15.3 | +2025-04-28 | CRAN (R 4.4.1) | |
| bit | 4.6.0 | @@ -123,12 +123,12 @@2024-05-16 | CRAN (R 4.4.1) | |||
| cards | -0.6.1 | -2025-07-03 | +0.6.0 | +2025-04-11 | CRAN (R 4.4.1) | |
| cardx | -0.2.5 | -2025-07-03 | +0.2.4 | +2025-04-12 | CRAN (R 4.4.1) | |
| caTools | 1.18.3 | @@ -171,28 +171,36 @@2024-07-26 | CRAN (R 4.4.1) | |||
| commonmark | -2.0.0 | -2025-07-07 | +1.9.5 | +2025-03-17 | CRAN (R 4.4.1) | |
| crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.4.1) | +|||
| credentials | +2.0.2 | +2024-10-04 | +CRAN (R 4.4.1) | +|||
| crosstalk | +1.2.1 | +2023-11-23 | +CRAN (R 4.4.0) | |||
| curl | -6.4.0 | -2025-06-22 | +6.2.2 | +2025-03-24 | CRAN (R 4.4.1) | |
| data.table | -1.17.8 | -2025-07-10 | +1.17.0 | +2025-02-22 | CRAN (R 4.4.1) | |
| datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.4.1) | |||
| datawizard | -1.2.0 | -2025-07-17 | +1.0.2 | +2025-03-24 | CRAN (R 4.4.1) | |
| DEoptimR | 1.1-3-1 | @@ -235,92 +243,100 @@2024-09-16 | CRAN (R 4.4.1) | |||
| easystats | -0.7.5 | -2025-07-11 | +0.7.4 | +2025-02-06 | CRAN (R 4.4.1) | -|
| ellipsis | +||||||
| effectsize | +1.0.0 | +2024-12-10 | +CRAN (R 4.4.1) | +|||
| ellipsis | 0.3.2 | 2021-04-29 | CRAN (R 4.4.1) | -|||
| emmeans | -1.11.2 | -2025-07-11 | +||||
| emmeans | +1.11.1 | +2025-05-04 | CRAN (R 4.4.1) | -|||
| esquisse | +||||||
| esquisse | 2.1.0 | 2025-02-21 | CRAN (R 4.4.1) | -|||
| estimability | +||||||
| estimability | 1.5.1 | 2024-05-12 | CRAN (R 4.4.0) | -|||
| eulerr | +||||||
| eulerr | 7.0.2 | 2024-03-28 | CRAN (R 4.4.0) | -|||
| evaluate | -1.0.4 | -2025-06-18 | +||||
| evaluate | +1.0.3 | +2025-01-10 | CRAN (R 4.4.1) | -|||
| farver | +||||||
| farver | 2.1.2 | 2024-05-13 | CRAN (R 4.4.1) | -|||
| fastmap | +||||||
| fastmap | 1.2.0 | 2024-05-15 | CRAN (R 4.4.1) | -|||
| flextable | -0.9.9 | -2025-05-31 | +||||
| flextable | +0.9.7 | +2024-10-27 | CRAN (R 4.4.1) | -|||
| fontawesome | +||||||
| fontawesome | 0.5.3 | 2024-11-16 | CRAN (R 4.4.1) | -|||
| fontBitstreamVera | +||||||
| fontBitstreamVera | 0.1.1 | 2017-02-01 | CRAN (R 4.4.1) | -|||
| fontLiberation | +||||||
| fontLiberation | 0.1.0 | 2016-10-15 | CRAN (R 4.4.1) | -|||
| fontquiver | +||||||
| fontquiver | 0.2.1 | 2017-02-01 | CRAN (R 4.4.0) | -|||
| forcats | +||||||
| forcats | 1.0.0 | 2023-01-29 | CRAN (R 4.4.0) | -|||
| foreach | +||||||
| foreach | 1.5.2 | 2022-02-02 | CRAN (R 4.4.0) | -|||
| foreign | +||||||
| foreign | 0.8-90 | 2025-03-31 | CRAN (R 4.4.1) | -|||
| Formula | +||||||
| Formula | 1.2-5 | 2023-02-24 | CRAN (R 4.4.1) | -|||
| FreesearchR | +||||||
| FreesearchR | 25.7.2 | NA | NA | -|||
| fs | +||||||
| fs | 1.6.6 | 2025-04-12 | CRAN (R 4.4.1) | -|||
| gdtools | +||||||
| gdtools | 0.4.2 | 2025-03-27 | CRAN (R 4.4.1) | -|||
| generics | -0.1.4 | -2025-05-09 | +||||
| generics | +0.1.3 | +2022-07-05 | +CRAN (R 4.4.1) | +|||
| gert | +2.1.5 | +2025-03-25 | CRAN (R 4.4.1) | |||
| ggalluvial | 0.12.5 | @@ -331,9 +347,9 @@2023-09-05 | CRAN (R 4.4.0) | |||
| ggforce | -0.5.0 | -2025-06-18 | -CRAN (R 4.4.1) | +0.4.2 | +2024-02-19 | +CRAN (R 4.4.0) |
| ggplot2 | 3.5.2 | 2025-04-09 | @@ -343,8 +359,16 @@2024-01-23 | CRAN (R 4.4.0) | ||
| ggstats | -0.10.0 | -2025-07-02 | +0.9.0 | +2025-03-10 | +CRAN (R 4.4.1) | +|
| gh | +1.4.1 | +2024-03-28 | +CRAN (R 4.4.0) | +|||
| gitcreds | +0.1.2 | +2022-09-08 | CRAN (R 4.4.1) | |||
| glue | 1.8.0 | @@ -363,13 +387,13 @@2024-10-25 | CRAN (R 4.4.1) | |||
| gtsummary | -2.3.0 | -2025-07-03 | +2.2.0 | +2025-04-14 | CRAN (R 4.4.1) | |
| haven | -2.5.5 | -2025-05-30 | -CRAN (R 4.4.1) | +2.5.4 | +2023-11-30 | +CRAN (R 4.4.0) |
| here | 1.0.1 | 2020-12-13 | @@ -398,46 +422,54 @@1.6.16 | 2025-04-16 | CRAN (R 4.4.1) | -|
| IDEAFilter | +||||||
| httr2 | +1.1.2 | +2025-03-26 | +CRAN (R 4.4.1) | +|||
| IDEAFilter | 0.2.0 | 2024-04-15 | CRAN (R 4.4.0) | -|||
| insight | -1.3.1 | -2025-06-30 | +||||
| insight | +1.2.0 | +2025-04-22 | CRAN (R 4.4.1) | -|||
| iterators | +||||||
| iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.4.1) | -|||
| jquerylib | +||||||
| jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.4.0) | -|||
| jsonlite | +||||||
| jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.4.1) | -|||
| jsonvalidate | +||||||
| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.4.1) | -|||
| KernSmooth | +||||||
| KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.4.1) | -|||
| keyring | -1.4.1 | -2025-06-15 | -CRAN (R 4.4.1) | -|||
| knitr | +||||||
| keyring | +1.3.2 | +2023-12-11 | +CRAN (R 4.4.0) | +|||
| knitr | 1.50 | 2025-03-16 | CRAN (R 4.4.1) | -|||
| labeling | +||||||
| labeling | 0.4.3 | 2023-08-29 | CRAN (R 4.4.1) | +|||
| labelled | +2.14.0 | +2025-01-08 | +CRAN (R 4.4.1) | |||
| later | 1.4.2 | 2025-04-08 | @@ -482,294 +514,318 @@2.0.1 | 2021-11-26 | CRAN (R 4.4.0) | -|
| mime | +||||||
| mgcv | +1.9-3 | +2025-04-04 | +CRAN (R 4.4.1) | +|||
| mime | 0.13 | 2025-03-17 | CRAN (R 4.4.1) | -|||
| miniUI | +||||||
| miniUI | 0.1.2 | 2025-04-17 | CRAN (R 4.4.1) | -|||
| minqa | +||||||
| minqa | 1.2.8 | 2024-08-17 | CRAN (R 4.4.1) | -|||
| mvtnorm | +||||||
| mvtnorm | 1.3-3 | 2025-01-10 | CRAN (R 4.4.1) | -|||
| nlme | +||||||
| nlme | 3.1-168 | 2025-03-31 | CRAN (R 4.4.1) | -|||
| nloptr | +||||||
| nloptr | 2.2.1 | 2025-03-17 | CRAN (R 4.4.1) | -|||
| nnet | +||||||
| nnet | 7.3-20 | 2025-01-01 | CRAN (R 4.4.1) | -|||
| officer | -0.6.10 | -2025-05-30 | +||||
| officer | +0.6.8 | +2025-03-23 | CRAN (R 4.4.1) | -|||
| opdisDownsampling | +||||||
| opdisDownsampling | 1.0.1 | 2024-04-15 | CRAN (R 4.4.0) | -|||
| openssl | -2.3.3 | -2025-05-26 | +||||
| openssl | +2.3.2 | +2025-02-03 | CRAN (R 4.4.1) | -|||
| openxlsx2 | -1.17 | -2025-07-04 | +||||
| openxlsx2 | +1.15 | +2025-04-25 | CRAN (R 4.4.1) | -|||
| pak | -0.9.0 | -2025-05-27 | +||||
| pak | +0.8.0.2 | +2025-04-08 | CRAN (R 4.4.1) | -|||
| parameters | -0.27.0 | -2025-07-09 | +||||
| parameters | +0.24.2 | +2025-03-04 | CRAN (R 4.4.1) | -|||
| patchwork | -1.3.1 | -2025-06-21 | +||||
| patchwork | +1.3.0 | +2024-09-16 | CRAN (R 4.4.1) | -|||
| pbmcapply | +||||||
| pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.4.1) | -|||
| performance | -0.15.0 | -2025-07-10 | +||||
| performance | +0.13.0 | +2025-01-15 | CRAN (R 4.4.1) | -|||
| phosphoricons | +||||||
| phosphoricons | 0.2.1 | 2024-04-08 | CRAN (R 4.4.0) | -|||
| pillar | -1.11.0 | -2025-07-04 | +||||
| pillar | +1.10.2 | +2025-04-05 | CRAN (R 4.4.1) | -|||
| pkgbuild | -1.4.8 | -2025-05-26 | +||||
| pkgbuild | +1.4.7 | +2025-03-24 | CRAN (R 4.4.1) | -|||
| pkgconfig | +||||||
| pkgconfig | 2.0.3 | 2019-09-22 | CRAN (R 4.4.1) | -|||
| pkgload | +||||||
| pkgload | 1.4.0 | 2024-06-28 | CRAN (R 4.4.0) | -|||
| plyr | +||||||
| plyr | 1.8.9 | 2023-10-02 | CRAN (R 4.4.1) | -|||
| polyclip | +||||||
| polyclip | 1.10-7 | 2024-07-23 | CRAN (R 4.4.1) | -|||
| pracma | +||||||
| pracma | 2.4.4 | 2023-11-10 | CRAN (R 4.4.1) | -|||
| processx | +||||||
| processx | 3.8.6 | 2025-02-21 | CRAN (R 4.4.1) | -|||
| profvis | +||||||
| profvis | 0.4.0 | 2024-09-20 | CRAN (R 4.4.1) | -|||
| promises | -1.3.3 | -2025-05-29 | +||||
| promises | +1.3.2 | +2024-11-28 | CRAN (R 4.4.1) | -|||
| proxy | +||||||
| proxy | 0.4-27 | 2022-06-09 | CRAN (R 4.4.1) | -|||
| ps | +||||||
| ps | 1.9.1 | 2025-04-12 | CRAN (R 4.4.1) | -|||
| purrr | -1.1.0 | -2025-07-10 | +||||
| purrr | +1.0.4 | +2025-02-05 | CRAN (R 4.4.1) | -|||
| qqconf | +||||||
| qqconf | 1.3.2 | 2023-04-14 | CRAN (R 4.4.0) | -|||
| qqplotr | +||||||
| qqplotr | 0.0.6 | 2023-01-25 | CRAN (R 4.4.0) | -|||
| quarto | +||||||
| quarto | 1.4.4 | 2024-07-20 | CRAN (R 4.4.0) | -|||
| R6 | +||||||
| R.cache | +0.16.0 | +2022-07-21 | +CRAN (R 4.4.0) | +|||
| R.methodsS3 | +1.8.2 | +2022-06-13 | +CRAN (R 4.4.1) | +|||
| R.oo | +1.27.0 | +2024-11-01 | +CRAN (R 4.4.1) | +|||
| R.utils | +2.13.0 | +2025-02-24 | +CRAN (R 4.4.1) | +|||
| R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.4.1) | -|||
| ragg | +||||||
| ragg | 1.4.0 | 2025-04-10 | CRAN (R 4.4.1) | -|||
| rankinPlot | +||||||
| rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.4.0) | -|||
| rappdirs | +||||||
| rappdirs | 0.3.3 | 2021-01-31 | CRAN (R 4.4.1) | -|||
| rbibutils | +||||||
| rbibutils | 2.3 | 2024-10-04 | CRAN (R 4.4.1) | -|||
| RColorBrewer | +||||||
| RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.4.1) | -|||
| Rcpp | -1.1.0 | -2025-07-02 | +||||
| Rcpp | +1.0.14 | +2025-01-12 | CRAN (R 4.4.1) | -|||
| RcppArmadillo | -14.6.0-1 | -2025-07-02 | +||||
| RcppArmadillo | +14.4.2-1 | +2025-04-25 | CRAN (R 4.4.1) | -|||
| Rdpack | +||||||
| Rdpack | 2.6.4 | 2025-04-09 | CRAN (R 4.4.1) | -|||
| reactable | +||||||
| reactable | 0.4.4 | 2023-03-12 | CRAN (R 4.4.0) | -|||
| readODS | +||||||
| readODS | 2.3.2 | 2025-01-13 | CRAN (R 4.4.1) | -|||
| readr | +||||||
| readr | 2.1.5 | 2024-01-10 | CRAN (R 4.4.0) | -|||
| readxl | +||||||
| readxl | 1.4.5 | 2025-03-07 | CRAN (R 4.4.1) | -|||
| REDCapCAST | +||||||
| REDCapCAST | 25.3.2 | 2025-03-10 | CRAN (R 4.4.1) | -|||
| REDCapR | +||||||
| REDCapR | 1.4.0 | 2025-01-11 | CRAN (R 4.4.1) | -|||
| reformulas | -0.4.1 | -2025-04-30 | +||||
| reformulas | +0.4.0 | +2024-11-03 | CRAN (R 4.4.1) | -|||
| remotes | +||||||
| remotes | 2.5.0 | 2024-03-17 | CRAN (R 4.4.1) | -|||
| rempsyc | +||||||
| rempsyc | 0.1.9 | 2025-02-01 | CRAN (R 4.4.1) | -|||
| renv | +||||||
| renv | 1.1.4 | 2025-03-20 | CRAN (R 4.4.1) | -|||
| reshape2 | +||||||
| reshape2 | 1.4.4 | 2020-04-09 | CRAN (R 4.4.0) | -|||
| rio | +||||||
| rio | 1.2.3 | 2024-09-25 | CRAN (R 4.4.1) | -|||
| rlang | +||||||
| rlang | 1.1.6 | 2025-04-11 | CRAN (R 4.4.1) | -|||
| rmarkdown | +||||||
| rmarkdown | 2.29 | 2024-11-04 | CRAN (R 4.4.1) | -|||
| robustbase | +||||||
| robustbase | 0.99-4-1 | 2024-09-27 | CRAN (R 4.4.1) | -|||
| roxygen2 | +||||||
| roxygen2 | 7.3.2 | 2024-06-28 | CRAN (R 4.4.0) | -|||
| rpart | +||||||
| rpart | 4.1.24 | 2025-01-07 | CRAN (R 4.4.1) | -|||
| rprojroot | -2.1.0 | -2025-07-12 | +||||
| rprojroot | +2.0.4 | +2023-11-05 | CRAN (R 4.4.1) | -|||
| rsconnect | -1.5.0 | -2025-06-26 | +||||
| rsconnect | +1.3.4 | +2025-01-22 | CRAN (R 4.4.1) | -|||
| rstudioapi | +||||||
| rstudioapi | 0.17.1 | 2024-10-22 | CRAN (R 4.4.1) | -|||
| sass | +||||||
| sass | 0.4.10 | 2025-04-11 | CRAN (R 4.4.1) | -|||
| scales | +||||||
| scales | 1.4.0 | 2025-04-24 | CRAN (R 4.4.1) | -|||
| see | +||||||
| see | 0.11.0 | 2025-03-11 | CRAN (R 4.4.1) | -|||
| sessioninfo | +||||||
| sessioninfo | 1.2.3 | 2025-02-05 | CRAN (R 4.4.1) | -|||
| shiny | -1.11.1 | -2025-07-03 | +||||
| shiny | +1.10.0 | +2024-12-14 | CRAN (R 4.4.1) | -|||
| shiny2docker | -0.0.3 | -2025-06-28 | +||||
| shiny2docker | +0.0.2 | +2025-02-09 | CRAN (R 4.4.1) | -|||
| shinybusy | +||||||
| shinybusy | 0.3.3 | 2024-03-09 | CRAN (R 4.4.0) | -|||
| shinyjs | +||||||
| shinyjs | 2.1.0 | 2021-12-23 | CRAN (R 4.4.0) | -|||
| shinyTime | +||||||
| shinyTime | 1.0.3 | 2022-08-19 | CRAN (R 4.4.0) | -|||
| shinyWidgets | +||||||
| shinyWidgets | 0.9.0 | 2025-02-21 | CRAN (R 4.4.1) | +|||
| sourcetools | +0.1.7-1 | +2023-02-01 | +CRAN (R 4.4.1) | |||
| stringi | 1.8.7 | 2025-03-27 | @@ -778,26 +834,34 @@1.5.1 | 2023-11-14 | CRAN (R 4.4.0) | +|
| styler | +1.10.3 | +2024-04-07 | +CRAN (R 4.4.0) | +|||
| sys | +3.4.3 | +2024-10-04 | +CRAN (R 4.4.1) | |||
| systemfonts | -1.2.3 | -2025-04-30 | +1.2.2 | +2025-04-04 | CRAN (R 4.4.1) | |
| testthat | 3.2.3 | 2025-01-13 | CRAN (R 4.4.1) | |||
| textshaping | -1.0.1 | -2025-05-01 | +1.0.0 | +2025-01-20 | CRAN (R 4.4.1) | |
| thematic | -0.1.7 | -2025-06-19 | -CRAN (R 4.4.1) | +0.1.6 | +2024-07-29 | +CRAN (R 4.4.0) |
| tibble | -3.3.0 | -2025-06-08 | -CRAN (R 4.4.1) | +3.2.1 | +2023-03-20 | +CRAN (R 4.4.0) |
| tidyr | 1.3.1 | 2024-01-24 | @@ -839,8 +903,8 @@2024-07-29 | CRAN (R 4.4.1) | ||
| V8 | -6.0.4 | -2025-06-04 | +6.0.3 | +2025-03-26 | CRAN (R 4.4.1) | |
| vctrs | 0.6.5 | @@ -879,8 +943,8 @@2024-07-26 | CRAN (R 4.4.1) | |||
| zip | -2.3.3 | -2025-05-13 | +2.3.2 | +2025-02-01 | CRAN (R 4.4.1) |
FreesearchR
- Source:vignettes/FreesearchR.Rmd
+ Source: vignettes/FreesearchR.Rmd
FreesearchR.RmdGetting started with FreesearchR
-Below is a simple walk-trough and basic descriptions on the different -features of the FreesearchR app.
+Below is a simple walk-trough and basic instructions for the +functions on the FreesearchR app.
Launching
-The easiest way to get started is to launch the onlie version of the app (click -this link). Please be aware not to upload sensitive data in this -version as data security can not be guaranteed in this online -environment. The app can easily be run from R on your own -computer by running the code below (read -more on running locally here):
+The easiest way to get started is to launch the hosted version of +the app on shinyapps.io (click this link).
+Additionally you have the option to run the app locally with access +to any data in your current working environment.
+To do this, open R (or RStudio or similar), and run the +following code to install the latest version of +FreesearchR and launch the app:
require("pak")
pak::pak("agdamsbo/FreesearchR")
library(FreesearchR)
FreesearchR::launch_FreesearchR()As a small note, a standalone Windows app version is on the drawing -board as well, but no time frame is currently available.
+board as well, but no time frame is available.
-Get started
+
diff --git a/articles/missingness.html b/articles/missingness.html
index 95a860ae..ad4a5214 100644
--- a/articles/missingness.html
+++ b/articles/missingness.html
@@ -73,7 +73,7 @@
Get started
+Importing data
-
Once in the app, get started by loading your data. You have three +
Once in the app and in the “Import”, you have three options available for importing data: file upload, REDCap server export and local or sample data.
-After choosing a data source nad importing data, you can preview the -basic data structure and missing observations, set a threshold to filter -data by completeness and further manually specify variables to include -for analyses.
+After choosing a data source, you can set a threshold to filter data +be completenes and further manually specify variables to include for +analyses.
File upload
-Several data file formats are supported for easy import (csv, txt, -xls(x), ods, rds, dta). If importing workbooks (xls(x) or ods), you are -prompted to specify sheet(s) to import. If choosing multiple sheets, -these are automatically merged by common variable(s), so please make -sure that key/ID variables are correctly named identically.
+Currently several data file formats are supported for easy import +(csv, txt, xls(x), ods, rds, dta). If importing workbooks (xls(x) or +ods), you are prompted to specify sheet(s) to import. If choosing +multiple sheets, these are automatically merged by common variable(s), +so please make sure that key variables are correctly named +identically.
+A notification is posted with error or success. After succesfull +import data can be previewed directly by clicking “click to see data” in +the notification.
REDCap server export @@ -130,7 +134,7 @@ rights to do so.
Please don’t store the API-key on your device unless encrypted or in a keyring, as this may compromise data safety. Log in to your REDCap server and retrieve the token when needed.
-Type the correct web address of your REDCap server.
+Type the correct webaddress of your REDCap server.
The module will validate the information and you can click “Connect”.
This will unfold options to preview your data dictionary (the main @@ -140,19 +144,19 @@ filtering options.
Local or sample data
-When opening the online hosted app, you can load some sample data to -try out the app. When running the app locally from R on your -own computer, you will find all data frames loaded in your environment -here. This extends the possible uses of this app to allow for quick and -easy data insights and code generation.
+When opening the online hosted app, this is mainly for testing +purposes. When running the app locally from R on your own +computer, you will find all data.frames in the current environment here. +This extends the possible uses of this app to allow for quick and easy +data insights and code generation for basic plotting to fine tune.
-Prepare
+
@@ -363,7 +364,7 @@ Choose which model(s) to include.
model results. Choose between MS Word or LibreOffice format.
diff --git a/articles/data-types.html b/articles/data-types.html
index a908d1cd..84532a49 100644
--- a/articles/data-types.html
+++ b/articles/data-types.html
@@ -73,7 +73,7 @@
Prepare
+Data
-
This is the panel to prepare data for evaluation and analyses and get -a good overview of your data, check data is classed and formatted -correctly, perform simple modifications and filter data.
+This is the panel to get a good overview of your data, check data is +classed and formatted correctly, perform simple modifications and filter +data.
Summary
@@ -337,9 +341,6 @@ analyses you should probably just write the code yourself.Generate simple regression models and get the results in a nice table. This will also be included in the exported report.
-This will generate a combined table with both univariate regression -model results for each included variable and a multivariate model with -all variables included for explorative analyses.
Data types
- Source:vignettes/data-types.Rmd
+ Source: vignettes/data-types.Rmd
data-types.RmdMissingness in data
- Source:vignettes/missingness.Rmd
+ Source: vignettes/missingness.Rmd
missingness.RmdFurther reading
-The authors behind the {finalfit}-package have -shared a very comprehensive article on what to do and think about -missing observations in your data. Please have a look -here.
+The authors behind the {finalfit}-package have shared +a very comprehensive article on what to do and think about missing +observations in your data. Please have a look here.
On visuals
- Source:vignettes/visuals.Rmd
+ Source: vignettes/visuals.Rmd
visuals.RmdCitation
-Source: DESCRIPTION
Source: DESCRIPTION
Damsbo A (2025). FreesearchR: A free and open-source browser based data analysis tool for researchers with publication ready output. diff --git a/news/index.html b/news/index.html index 84147a80..bb96c198 100644 --- a/news/index.html +++ b/news/index.html @@ -38,19 +38,14 @@
-
- FreesearchR 25.7.3 - DEV
-- -NEW preparing to automatically only show relevant tabs to simplify interface. NOT IMPLEMENTED YET -
-
FreesearchR 25.7.2
+FreesearchR 25.7.2 - DEV
FIX refining hiding drop downs. All JavaScript is now in separate file. Coded with GAI help from claude.ai.
FIX refined iconography and navigation
-FIX updated intro and docs.
+NEW preparing to automatically only show relevant tabs to simplify interface. NOT IMPLEMENTED YET
FreesearchR 25.7.1
diff --git a/pkgdown.yml b/pkgdown.yml index 7ab13a84..dbb9d581 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: missingness: missingness.html session: session.html visuals: visuals.html -last_built: 2025-07-22T18:37Z +last_built: 2025-07-04T08:28Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/FreesearchR_palette.html b/reference/FreesearchR_palette.html index 96b9569b..350e359c 100644 --- a/reference/FreesearchR_palette.html +++ b/reference/FreesearchR_palette.html @@ -38,7 +38,7 @@Convert class grid column to icon
- Source:R/data-summary.R
+ Source: R/data-summary.R
add_class_icon.RdConvert string of arguments to list of arguments
- Source:R/helpers.R
+ Source: R/helpers.R
argsstring2list.RdPrint a flexible baseline characteristics table
- Source:R/baseline_table.R
+ Source: R/baseline_table.R
baseline_table.RdExtract and clean axis ranges
- Source:R/data_plots.R
+ Source: R/data_plots.R
clean_common_axis.RdAttempts at applying uniform date format
- Source:R/update-variables-ext.R
+ Source: R/update-variables-ext.R
clean_date.Rdgsub wrapper for piping with default values for separator substituting
- Source:R/update-variables-ext.R
+ Source: R/update-variables-ext.R
clean_sep.RdA selectizeInput customized for data frames with column labels
- Source:R/custom_SelectInput.R
+ Source: R/custom_SelectInput.R
columnSelectInput.RdPairwise comparison of missings across covariables
- Source:R/missings-module.R
+ Source: R/missings-module.R
compare_missings.RdCreate a baseline table
- Source:R/baseline_table.R
+ Source: R/baseline_table.R
create_baseline.RdCreate summetric log ticks
- Source:R/regression_plot.R
+ Source: R/regression_plot.R
create_log_tics.RdCreate a data overview datagrid
- Source:R/data-summary.R
+ Source: R/data-summary.R
create_overview_datagrid.RdModule to Convert Numeric to Factor
- Source:R/cut-variable-dates.R
+ Source: R/cut-variable-dates.R
cut-variable.RdExtended cutting function with fall-back to the native base::cut
- Source:R/cut-variable-dates.R
+ Source: R/cut-variable-dates.R
cut_var.RdData correlations evaluation module
- Source:R/correlations-module.R
+ Source: R/correlations-module.R
data-correlations.RdTest app for the data-import module
- Source:R/data-import.R
+ Source: R/data-import.R
data-import.RdData correlations evaluation module
- Source:R/missings-module.R, R/visual_summary.R
+ Source: R/missings-module.R, R/visual_summary.R
data-missings.RdData correlations evaluation module
- Source:R/data_plots.R, R/plot_box.R, R/plot_hbar.R, and 4 more
+ Source: R/data_plots.R, R/plot_box.R, R/plot_hbar.R, and 4 more
data-plots.RdData summary for printing visual summary
- Source:R/visual_summary.R
+ Source: R/visual_summary.R
data_summary_gather.RdFilter function to filter data set by variable type
- Source:R/helpers.R
+ Source: R/helpers.R
data_type_filter.RdRecognised data types from data_type
- Source:R/regression_model.R
+ Source: R/regression_model.R
data_types.RdDrop empty events from REDCap export
- Source:R/redcap_read_shiny_module.R
+ Source: R/redcap_read_shiny_module.R
drop_empty_event.RdDeparses expression as string, substitutes native pipe and adds assign
- Source:R/helpers.R
+ Source: R/helpers.R
expression_string.RdMerges list of named arguments for qmd header generation
- Source:R/report.R
+ Source: R/report.R
format_writer.RdGet the function options based on the selected function description
- Source:R/regression_model.R
+ Source: R/regression_model.R
get_fun_options.RdPrint label, and if missing print variable name
- Source:R/data_plots.R
+ Source: R/data_plots.R
get_label.RdGet the function options based on the selected function description
- Source:R/data_plots.R
+ Source: R/data_plots.R
get_plot_options.RdEasily get variable icon based on data type or class
- Source:R/data-summary.R
+ Source: R/data-summary.R
get_var_icon.RdWrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()'
- Source:R/helpers.R
+ Source: R/helpers.R
getfun.RdGGplot default theme for plotting export objects
- Source:R/theme.R
+ Source: R/theme.R
gg_theme_export.RdGGplot default theme for plotting in Shiny
- Source:R/theme.R
+ Source: R/theme.R
gg_theme_shiny.RdMatches pattern to vector based on match type
- Source:R/wide2long.R
+ Source: R/wide2long.R
grepl_fix.RdWrapper to ease data file import
- Source:R/import-file-ext.R
+ Source: R/import-file-ext.R
import-file-type.RdTest app for the import_file module
- Source:R/import-file-ext.R
+ Source: R/import-file-ext.R
import-file_module.RdSplit vector by an index and embed addition
- Source:R/report.R
+ Source: R/report.R
index_embed.RdChecks if elements in vector are equally spaced as indication of ID
- Source:R/data-summary.R
+ Source: R/data-summary.R
is_consecutive.RdTest is date/datetime/time
- Source:R/cut-variable-dates.R
+ Source: R/cut-variable-dates.R
is_datetime.RdTest if element is identical to the previous
- Source:R/helpers.R
+ Source: R/helpers.R
is_identical_to_previous.RdTest if url is valid format for REDCap API
- Source:R/redcap_read_shiny_module.R
+ Source: R/redcap_read_shiny_module.R
is_valid_redcap_url.RdValidate REDCap token
- Source:R/redcap_read_shiny_module.R
+ Source: R/redcap_read_shiny_module.R
is_valid_token.RdEasily launch the FreesearchR app
- Source:R/launch_FreesearchR.R
+ Source: R/launch_FreesearchR.R
launch_FreesearchR.RdEasily round log scale limits for nice plots
- Source:R/regression_plot.R
+ Source: R/regression_plot.R
limit_log.RdLine breaking at given number of characters for nicely plotting labels
- Source:R/data_plots.R
+ Source: R/data_plots.R
line_break.RdWrapper to pivot gtsummary table data to long for plotting
- Source:R/regression_plot.R
+ Source: R/regression_plot.R
merge_long.RdPlot missings and class with apexcharter
- Source:R/visual_summary.R
+ Source: R/visual_summary.R
missings_apex_plot.RdWrapper to modify quarto file to render specific formats
- Source:R/report.R
+ Source: R/report.R
modify_qmd.RdCreate a data overview data.frame ready for sparklines
- Source:R/data-summary.R
+ Source: R/data-summary.R
overview_vars.RdReduce character vector with the native pipe operator or character string
- Source:R/helpers.R
+ Source: R/helpers.R
pipe_string.RdRegression coef plot from gtsummary. Slightly modified to pass on arguments
- Source:R/regression_plot.R
+ Source: R/regression_plot.R
plot.tbl_regression.RdEasily plot single euler diagrams
- Source:R/plot_euler.R
+ Source: R/plot_euler.R
plot_euler_single.RdGet possible regression models
- Source:R/regression_model.R
+ Source: R/regression_model.R
possible_functions.RdShiny module to browser and export REDCap data
- Source:R/redcap_read_shiny_module.R
+ Source: R/redcap_read_shiny_module.R
redcap_read_shiny_module.RdCreate a regression model programatically
- Source:R/regression_model.R
+ Source: R/regression_model.R
regression_model.RdCreate table of regression model
- Source:R/regression_table.R
+ Source: R/regression_table.R
regression_table.RdCreate regression summary table
- Source:R/regression_table.R
+ Source: R/regression_table.R
regression_table_create.RdRemoves columns with completenes below cutoff
- Source:R/helpers.R
+ Source: R/helpers.R
remove_empty_cols.RdVery simple function to remove nested lists, like when uploading .rds
- Source:R/helpers.R
+ Source: R/helpers.R
remove_nested_list.RdGet names of repeated instruments
- Source:R/redcap_read_shiny_module.R
+ Source: R/redcap_read_shiny_module.R
repeated_instruments.RdCreate a select input control with icon(s)
- Source:R/import-file-ext.R
+ Source: R/import-file-ext.R
selectInputIcon.RdDisplay a table in a window
- Source:R/datagrid-infos-mod.R
+ Source: R/datagrid-infos-mod.R
show_data.RdSimplified version of the snakecase packages to_snake_case
- Source:R/helpers.R
+ Source: R/helpers.R
simple_snake.RdDrop-in replacement for the base::sort_by with option to remove NAs
- Source:R/helpers.R
+ Source: R/helpers.R
sort_by.RdSpecify format arguments to include in qmd header/frontmatter
- Source:R/report.R
+ Source: R/report.R
specify_qmd_format.RdEasily subset by data type function
- Source:R/data_plots.R
+ Source: R/data_plots.R
subset_types.RdImplemented functions
- Source:R/regression_model.R
+ Source: R/regression_model.R
supported_functions.RdEnsure symmetrical plot around 1 on a logarithmic x scale for ratio plots
- Source:R/regression_plot.R
+ Source: R/regression_plot.R
symmetrical_scale_x_log10.RdA substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.
- Source:R/regression_table.R
+ Source: R/regression_table.R
tbl_merge.RdCreate unique short names of character vector items based on index
- Source:R/visual_summary.R
+ Source: R/visual_summary.R
unique_short.RdModule to Reorder the Levels of a Factor Variable
- Source:R/update-factor-ext.R
+ Source: R/update-factor-ext.R
update-factor.RdSelect, rename and convert variables
- Source:R/update-variables-ext.R
+ Source: R/update-variables-ext.R
update-variables.RdModified from the datamods pacakge
- Source:R/update-variables-ext.R
+ Source: R/update-variables-ext.R
update_variables_datagrid.RdA selectizeInput customized for named vectors
- Source:R/custom_SelectInput.R
+ Source: R/custom_SelectInput.R
vectorSelectInput.RdVertical stacked bar plot wrapper
- Source:R/plot_hbar.R
+ Source: R/plot_hbar.R
vertical_stacked_bars.RdGgplot2 data summary visualisation based on visdat::vis_dat.
- Source:R/visual_summary.R
+ Source: R/visual_summary.R
visual_summary.RdAlternative pivoting method for easily pivoting based on name pattern
- Source:R/wide2long.R
+ Source: R/wide2long.R
wide2long.RdWrapper to save data in RDS, load into specified qmd and render
- Source:R/helpers.R
+ Source: R/helpers.R
write_quarto.Rd<\\/div>\\n