From fd57cd2476efdaea7a7b04da84194e939f9aa46c Mon Sep 17 00:00:00 2001 From: agdamsbo <43278243+agdamsbo@users.noreply.github.com> Date: Mon, 2 Mar 2026 19:40:41 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20agdamsbo?= =?UTF-8?q?/FreesearchR@fe1609b4f68555e996084d6b7f2110a38f9e0950=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- SESSION.html | 180 ++++++++++++++--------------- SESSION.md | 13 +-- articles/session.html | 192 ++++++++++++++----------------- articles/session.md | 15 +-- llms.txt | 4 +- news/index.html | 2 +- news/index.md | 5 +- pkgdown.yml | 2 +- reference/FreesearchR_theme.html | 107 +++++++++++++++++ reference/FreesearchR_theme.md | 40 +++++++ reference/baseline_table.html | 4 +- reference/create_baseline.html | 8 +- reference/create_log_tics.html | 2 +- reference/create_log_tics.md | 2 +- reference/data-plots.html | 2 +- reference/data-plots.md | 2 +- reference/getfun.html | 2 +- reference/getfun.md | 2 +- reference/index.html | 14 +-- reference/index.md | 4 +- search.json | 2 +- sitemap.xml | 2 +- 22 files changed, 359 insertions(+), 247 deletions(-) create mode 100644 reference/FreesearchR_theme.html create mode 100644 reference/FreesearchR_theme.md diff --git a/SESSION.html b/SESSION.html index 494de17f..119609a8 100644 --- a/SESSION.html +++ b/SESSION.html @@ -43,7 +43,7 @@ - +
——————————– R environment ———————————
|setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-02-28 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.1.260228 |
|setting |value | |:———–|:——————————————| |version |R version 4.5.2 (2025-10-31) | |os |macOS Tahoe 26.3 | |system |aarch64, darwin20 | |ui |RStudio | |language |(EN) | |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |Europe/Copenhagen | |date |2026-03-02 | |rstudio |2026.01.1+403 Apple Blossom (desktop) | |pandoc |3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | |quarto |1.7.30 @ /usr/local/bin/quarto | |FreesearchR |26.3.1.260302 |

———————————– packages ———————————–

@@ -134,46 +134,46 @@ - + + + + + - + - + - + - + - + - + - + - + - - - - @@ -314,86 +314,78 @@ - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - - - - @@ -418,22 +410,22 @@ - + + + + + - + - + - - - - @@ -518,102 +510,102 @@ - - - - - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + + + + @@ -810,26 +802,18 @@ - - - - - + - + - + - - - - @@ -838,47 +822,51 @@ - + + + + + - + - + - + - + - + - + - + - + - + - + diff --git a/SESSION.md b/SESSION.md index 4b3054d7..2dd10426 100644 --- a/SESSION.md +++ b/SESSION.md @@ -2,7 +2,7 @@ | ——————————– R environment ——————————— | |--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-02-28 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.1.260228 \| | +| \|setting \|value \| \|:———–\|:——————————————\| \|version \|R version 4.5.2 (2025-10-31) \| \|os \|macOS Tahoe 26.3 \| \|system \|aarch64, darwin20 \| \|ui \|RStudio \| \|language \|(EN) \| \|collate \|en_US.UTF-8 \| \|ctype \|en_US.UTF-8 \| \|tz \|Europe/Copenhagen \| \|date \|2026-03-02 \| \|rstudio \|2026.01.1+403 Apple Blossom (desktop) \| \|pandoc \|3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) \| \|quarto \|1.7.30 @ /usr/local/bin/quarto \| \|FreesearchR \|26.3.1.260302 \| | ## ———————————– packages ———————————– @@ -29,6 +29,7 @@ | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | +| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -38,7 +39,6 @@ | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | -| crul | 1.6.0 | NA | NA | | curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | @@ -74,7 +74,6 @@ | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | -| gfonts | 0.2.0 | NA | NA | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | @@ -93,17 +92,16 @@ | htmlTable | 2.4.3 | 2024-07-21 | CRAN (R 4.5.0) | | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | -| httpcode | 0.3.0 | NA | NA | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | +| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | -| labeling | 0.4.3 | 2023-08-29 | CRAN (R 4.5.0) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | @@ -125,7 +123,6 @@ | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | -| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -149,6 +146,7 @@ | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | +| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -198,13 +196,12 @@ | tidyselect | 1.2.1 | 2024-03-11 | CRAN (R 4.5.0) | | timechange | 0.4.0 | 2026-01-29 | CRAN (R 4.5.2) | | toastui | 0.4.0 | 2025-04-03 | CRAN (R 4.5.0) | -| triebeard | 0.4.1 | NA | NA | | tweenr | 2.0.3 | 2024-02-26 | CRAN (R 4.5.0) | | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | -| urltools | 1.7.3.1 | NA | NA | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | +| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/articles/session.html b/articles/session.html index f5be7577..03ed2a23 100644 --- a/articles/session.html +++ b/articles/session.html @@ -133,7 +133,7 @@ packages and the latest build info.

- + @@ -149,7 +149,7 @@ packages and the latest build info.

- +
package1.1.0 2016-07-27 CRAN (R 4.5.0)
checkmate
cffr1.2.12026-01-12CRAN (R 4.5.2)
checkmate 2.3.4 2026-02-03 CRAN (R 4.5.2)
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class 7.3-23 2025-01-01 CRAN (R 4.5.2)
classInt
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cli
cli 3.6.5 2025-04-23 CRAN (R 4.5.0)
cluster
cluster 2.1.8.2 2026-02-05 CRAN (R 4.5.2)
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colorspace
colorspace 2.1-2 2025-09-22 CRAN (R 4.5.0)
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curl 7.0.0 2025-08-190.1.4 2025-05-09 CRAN (R 4.5.0)
gfonts0.2.0NANA
ggalluvial
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ggcorrplot
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ggforce
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ggplot2
ggplot2 4.0.2 2026-02-03 CRAN (R 4.5.2)
ggridges
ggridges 0.5.7 2025-08-27 CRAN (R 4.5.0)
ggstats
ggstats 0.12.0 2025-12-22 CRAN (R 4.5.2)
glue
glue 1.8.0 2024-09-30 CRAN (R 4.5.0)
gridExtra
gridExtra 2.3 2017-09-09 CRAN (R 4.5.0)
gt
gt 1.3.0 2026-01-22 CRAN (R 4.5.2)
gtable
gtable 0.3.6 2024-10-25 CRAN (R 4.5.0)
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gtsummary 2.5.0 2025-12-05 CRAN (R 4.5.2)
haven
haven 2.5.5 2025-05-30 CRAN (R 4.5.0)
here
here 1.0.2 2025-09-15 CRAN (R 4.5.0)
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Hmisc 5.2-5 2026-01-09 CRAN (R 4.5.2)
hms
hms 1.1.4 2025-10-17 CRAN (R 4.5.0)
htmlTable
htmlTable 2.4.3 2024-07-21 CRAN (R 4.5.0)
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KernSmooth
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later 1.4.6 2026-02-130.2.0 2025-08-29 CRAN (R 4.5.0)
pak0.9.22025-12-22CRAN (R 4.5.2)
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parameters 0.28.3 2025-11-25 CRAN (R 4.5.2)
patchwork
patchwork 1.3.2 2025-08-25 CRAN (R 4.5.0)
pbmcapply
pbmcapply 1.5.1 2022-04-28 CRAN (R 4.5.0)
performance
performance 0.16.0 2026-02-04 CRAN (R 4.5.2)
phosphoricons
phosphoricons 0.2.1 2024-04-08 CRAN (R 4.5.0)
pillar
pillar 1.11.1 2025-09-17 CRAN (R 4.5.0)
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pkgbuild 1.4.8 2025-05-26 CRAN (R 4.5.0)
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pkgconfig 2.0.3 2019-09-22 CRAN (R 4.5.0)
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pkgload 1.5.0 2026-02-03 CRAN (R 4.5.2)
plyr
plyr 1.8.9 2023-10-02 CRAN (R 4.5.0)
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polyclip 1.10-7 2024-07-23 CRAN (R 4.5.0)
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pracma 2.4.6 2025-10-22 CRAN (R 4.5.0)
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promises 1.5.0 2025-11-01 CRAN (R 4.5.0)
proxy
proxy 0.4-29 2025-12-29 CRAN (R 4.5.2)
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ps 1.9.1 2025-04-12 CRAN (R 4.5.0)
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purrr 1.2.1 2026-01-09 CRAN (R 4.5.2)
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qqconf 1.3.2 2023-04-14 CRAN (R 4.5.0)
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qqplotr 0.0.7 2025-09-05 CRAN (R 4.5.0)
quarto
quarto 1.5.1 2025-09-04 CRAN (R 4.5.0)
R6
R6 2.6.1 2025-02-15 CRAN (R 4.5.0)
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ragg 1.5.0 2025-09-02 CRAN (R 4.5.0)
rankinPlot
rankinPlot 1.1.0 2023-01-30 CRAN (R 4.5.0)
rappdirs0.3.42026-01-17CRAN (R 4.5.2)
rbibutils 2.4.1 2026-01-210.4.0 2025-04-03 CRAN (R 4.5.0)
triebeard0.4.1NANA
tweenr
tweenr 2.0.3 2024-02-26 CRAN (R 4.5.0)
twosamples
twosamples 2.0.1 2023-06-23 CRAN (R 4.5.0)
tzdb
tzdb 0.5.0 2025-03-15 CRAN (R 4.5.0)
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usethis 3.2.1 2025-09-061.2-2 2026-01-23 CRAN (R 4.5.2)
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vroom 1.7.0 2026-01-27 CRAN (R 4.5.2)
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zip
zip 2.3.3 2025-05-13 CRAN (R 4.5.0)
date2026-02-282026-03-02
rstudio
FreesearchR26.3.1.26022826.3.1.260302
@@ -294,65 +294,65 @@ packages and the latest build info.

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CRAN (R 4.5.0) +jsonvalidate +1.5.0 +2025-02-07 +CRAN (R 4.5.0) + + KernSmooth 2.23-26 2025-01-01 CRAN (R 4.5.2) - + keyring 1.4.1 2025-06-15 CRAN (R 4.5.0) - + knitr 1.51 2025-12-20 CRAN (R 4.5.2) - -labeling -0.4.3 -2023-08-29 -CRAN (R 4.5.0) - later 1.4.6 @@ -870,149 +858,149 @@ packages and the latest build info.

CRAN (R 4.5.0) -pak -0.9.2 -2025-12-22 -CRAN (R 4.5.2) - - parameters 0.28.3 2025-11-25 CRAN (R 4.5.2) - + patchwork 1.3.2 2025-08-25 CRAN (R 4.5.0) - + pbmcapply 1.5.1 2022-04-28 CRAN (R 4.5.0) - + performance 0.16.0 2026-02-04 CRAN (R 4.5.2) - + phosphoricons 0.2.1 2024-04-08 CRAN (R 4.5.0) - + pillar 1.11.1 2025-09-17 CRAN (R 4.5.0) - + pkgbuild 1.4.8 2025-05-26 CRAN (R 4.5.0) - + pkgconfig 2.0.3 2019-09-22 CRAN (R 4.5.0) - + pkgload 1.5.0 2026-02-03 CRAN (R 4.5.2) - + plyr 1.8.9 2023-10-02 CRAN (R 4.5.0) - + polyclip 1.10-7 2024-07-23 CRAN (R 4.5.0) - + pracma 2.4.6 2025-10-22 CRAN (R 4.5.0) - + processx 3.8.6 2025-02-21 CRAN (R 4.5.0) - + promises 1.5.0 2025-11-01 CRAN (R 4.5.0) - + proxy 0.4-29 2025-12-29 CRAN (R 4.5.2) - + ps 1.9.1 2025-04-12 CRAN (R 4.5.0) - + purrr 1.2.1 2026-01-09 CRAN (R 4.5.2) - + qqconf 1.3.2 2023-04-14 CRAN (R 4.5.0) - + qqplotr 0.0.7 2025-09-05 CRAN (R 4.5.0) - + quarto 1.5.1 2025-09-04 CRAN (R 4.5.0) - + R6 2.6.1 2025-02-15 CRAN (R 4.5.0) - + ragg 1.5.0 2025-09-02 CRAN (R 4.5.0) - + rankinPlot 1.1.0 2023-01-30 CRAN (R 4.5.0) + +rappdirs +0.3.4 +2026-01-17 +CRAN (R 4.5.2) + rbibutils 2.4.1 @@ -1308,35 +1296,23 @@ packages and the latest build info.

CRAN (R 4.5.0) -triebeard -0.4.1 -NA -NA - - tweenr 2.0.3 2024-02-26 CRAN (R 4.5.0) - + twosamples 2.0.1 2023-06-23 CRAN (R 4.5.0) - + tzdb 0.5.0 2025-03-15 CRAN (R 4.5.0) - -urltools -1.7.3.1 -NA -NA - usethis 3.2.1 @@ -1350,66 +1326,72 @@ packages and the latest build info.

CRAN (R 4.5.2) +V8 +8.0.1 +2025-10-10 +CRAN (R 4.5.0) + + vctrs 0.7.1 2026-01-23 CRAN (R 4.5.2) - + viridis 0.6.5 2024-01-29 CRAN (R 4.5.0) - + viridisLite 0.4.3 2026-02-04 CRAN (R 4.5.2) - + vroom 1.7.0 2026-01-27 CRAN (R 4.5.2) - + withr 3.0.2 2024-10-28 CRAN (R 4.5.0) - + writexl 1.5.4 2025-04-15 CRAN (R 4.5.0) - + xfun 0.56 2026-01-18 CRAN (R 4.5.2) - + xml2 1.5.2 2026-01-17 CRAN (R 4.5.2) - + xtable 1.8-4 2019-04-21 CRAN (R 4.5.0) - + yaml 2.3.12 2025-12-10 CRAN (R 4.5.2) - + zip 2.3.3 2025-05-13 diff --git a/articles/session.md b/articles/session.md index 0c3168ef..a35256e2 100644 --- a/articles/session.md +++ b/articles/session.md @@ -28,11 +28,11 @@ FreesearchR:::session_data$platform |> knitr::kable() | collate | en_US.UTF-8 | | ctype | en_US.UTF-8 | | tz | Europe/Copenhagen | -| date | 2026-02-28 | +| date | 2026-03-02 | | rstudio | 2026.01.1+403 Apple Blossom (desktop) | | pandoc | 3.6.4 @ /opt/homebrew/bin/ (via rmarkdown) | | quarto | 1.7.30 @ /usr/local/bin/quarto | -| FreesearchR | 26.3.1.260228 | +| FreesearchR | 26.3.1.260302 | ## Libraries @@ -63,6 +63,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | cardx | 0.3.2 | 2026-02-05 | CRAN (R 4.5.2) | | caTools | 1.18.3 | 2024-09-04 | CRAN (R 4.5.0) | | cellranger | 1.1.0 | 2016-07-27 | CRAN (R 4.5.0) | +| cffr | 1.2.1 | 2026-01-12 | CRAN (R 4.5.2) | | checkmate | 2.3.4 | 2026-02-03 | CRAN (R 4.5.2) | | class | 7.3-23 | 2025-01-01 | CRAN (R 4.5.2) | | classInt | 0.4-11 | 2025-01-08 | CRAN (R 4.5.0) | @@ -72,7 +73,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | colorspace | 2.1-2 | 2025-09-22 | CRAN (R 4.5.0) | | commonmark | 2.0.0 | 2025-07-07 | CRAN (R 4.5.0) | | crayon | 1.5.3 | 2024-06-20 | CRAN (R 4.5.0) | -| crul | 1.6.0 | NA | NA | | curl | 7.0.0 | 2025-08-19 | CRAN (R 4.5.0) | | data.table | 1.18.2.1 | 2026-01-27 | CRAN (R 4.5.2) | | datamods | 1.5.3 | 2024-10-02 | CRAN (R 4.5.0) | @@ -108,7 +108,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | fs | 1.6.6 | 2025-04-12 | CRAN (R 4.5.0) | | gdtools | 0.5.0 | 2026-02-09 | CRAN (R 4.5.2) | | generics | 0.1.4 | 2025-05-09 | CRAN (R 4.5.0) | -| gfonts | 0.2.0 | NA | NA | | ggalluvial | 0.12.5 | 2023-02-22 | CRAN (R 4.5.0) | | ggcorrplot | 0.1.4.1 | 2023-09-05 | CRAN (R 4.5.0) | | ggforce | 0.5.0 | 2025-06-18 | CRAN (R 4.5.0) | @@ -127,17 +126,16 @@ FreesearchR:::session_data$libs|> knitr::kable() | htmlTable | 2.4.3 | 2024-07-21 | CRAN (R 4.5.0) | | htmltools | 0.5.9 | 2025-12-04 | CRAN (R 4.5.2) | | htmlwidgets | 1.6.4 | 2023-12-06 | CRAN (R 4.5.0) | -| httpcode | 0.3.0 | NA | NA | | httpuv | 1.6.16 | 2025-04-16 | CRAN (R 4.5.0) | | IDEAFilter | 0.2.1 | 2025-07-29 | CRAN (R 4.5.0) | | insight | 1.4.6 | 2026-02-04 | CRAN (R 4.5.2) | | iterators | 1.0.14 | 2022-02-05 | CRAN (R 4.5.0) | | jquerylib | 0.1.4 | 2021-04-26 | CRAN (R 4.5.0) | | jsonlite | 2.0.0 | 2025-03-27 | CRAN (R 4.5.0) | +| jsonvalidate | 1.5.0 | 2025-02-07 | CRAN (R 4.5.0) | | KernSmooth | 2.23-26 | 2025-01-01 | CRAN (R 4.5.2) | | keyring | 1.4.1 | 2025-06-15 | CRAN (R 4.5.0) | | knitr | 1.51 | 2025-12-20 | CRAN (R 4.5.2) | -| labeling | 0.4.3 | 2023-08-29 | CRAN (R 4.5.0) | | later | 1.4.6 | 2026-02-13 | CRAN (R 4.5.2) | | lattice | 0.22-7 | 2025-04-02 | CRAN (R 4.5.2) | | lifecycle | 1.0.5 | 2026-01-08 | CRAN (R 4.5.2) | @@ -159,7 +157,6 @@ FreesearchR:::session_data$libs|> knitr::kable() | openssl | 2.3.4 | 2025-09-30 | CRAN (R 4.5.0) | | openxlsx2 | 1.23.1 | 2026-01-19 | CRAN (R 4.5.2) | | otel | 0.2.0 | 2025-08-29 | CRAN (R 4.5.0) | -| pak | 0.9.2 | 2025-12-22 | CRAN (R 4.5.2) | | parameters | 0.28.3 | 2025-11-25 | CRAN (R 4.5.2) | | patchwork | 1.3.2 | 2025-08-25 | CRAN (R 4.5.0) | | pbmcapply | 1.5.1 | 2022-04-28 | CRAN (R 4.5.0) | @@ -183,6 +180,7 @@ FreesearchR:::session_data$libs|> knitr::kable() | R6 | 2.6.1 | 2025-02-15 | CRAN (R 4.5.0) | | ragg | 1.5.0 | 2025-09-02 | CRAN (R 4.5.0) | | rankinPlot | 1.1.0 | 2023-01-30 | CRAN (R 4.5.0) | +| rappdirs | 0.3.4 | 2026-01-17 | CRAN (R 4.5.2) | | rbibutils | 2.4.1 | 2026-01-21 | CRAN (R 4.5.2) | | RColorBrewer | 1.1-3 | 2022-04-03 | CRAN (R 4.5.0) | | Rcpp | 1.1.1 | 2026-01-10 | CRAN (R 4.5.2) | @@ -232,13 +230,12 @@ FreesearchR:::session_data$libs|> knitr::kable() | tidyselect | 1.2.1 | 2024-03-11 | CRAN (R 4.5.0) | | timechange | 0.4.0 | 2026-01-29 | CRAN (R 4.5.2) | | toastui | 0.4.0 | 2025-04-03 | CRAN (R 4.5.0) | -| triebeard | 0.4.1 | NA | NA | | tweenr | 2.0.3 | 2024-02-26 | CRAN (R 4.5.0) | | twosamples | 2.0.1 | 2023-06-23 | CRAN (R 4.5.0) | | tzdb | 0.5.0 | 2025-03-15 | CRAN (R 4.5.0) | -| urltools | 1.7.3.1 | NA | NA | | usethis | 3.2.1 | 2025-09-06 | CRAN (R 4.5.0) | | uuid | 1.2-2 | 2026-01-23 | CRAN (R 4.5.2) | +| V8 | 8.0.1 | 2025-10-10 | CRAN (R 4.5.0) | | vctrs | 0.7.1 | 2026-01-23 | CRAN (R 4.5.2) | | viridis | 0.6.5 | 2024-01-29 | CRAN (R 4.5.0) | | viridisLite | 0.4.3 | 2026-02-04 | CRAN (R 4.5.2) | diff --git a/llms.txt b/llms.txt index 2797d73a..fa0b6e32 100644 --- a/llms.txt +++ b/llms.txt @@ -126,6 +126,8 @@ No tracking data is sent running the app locally (see above). - [`FreesearchR_palette()`](https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_palette.md) : Use the FreesearchR colors +- [`FreesearchR_theme()`](https://agdamsbo.github.io/FreesearchR/reference/FreesearchR_theme.md) + : Custom theme based on unity - [`add_class_icon()`](https://agdamsbo.github.io/FreesearchR/reference/add_class_icon.md) : Convert class grid column to icon - [`add_sparkline()`](https://agdamsbo.github.io/FreesearchR/reference/add_sparkline.md) @@ -175,8 +177,6 @@ No tracking data is sent running the app locally (see above). : Create summetric log ticks - [`create_overview_datagrid()`](https://agdamsbo.github.io/FreesearchR/reference/create_overview_datagrid.md) : Create a data overview datagrid -- [`custom_theme()`](https://agdamsbo.github.io/FreesearchR/reference/custom_theme.md) - : Custom theme based on unity - [`cut_variable_ui()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) [`cut_variable_server()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) [`modal_cut_variable()`](https://agdamsbo.github.io/FreesearchR/reference/cut-variable.md) diff --git a/news/index.html b/news/index.html index 97ac28bb..cf4f6ff0 100644 --- a/news/index.html +++ b/news/index.html @@ -43,7 +43,7 @@

FreesearchR 26.3.1

-

FIX Include font files for static loading without dependency on Google.

+

FIX Include font files for static loading without dependency on Google. Kept webfonts from google as local fonts are not working for now.

NEW Updated text strings to better reflect environment data availability.

New strings translated.

diff --git a/news/index.md b/news/index.md index aa4f83df..4abf44fa 100644 --- a/news/index.md +++ b/news/index.md @@ -2,8 +2,9 @@ ## FreesearchR 26.3.1 -*FIX* Include font files for static loading without dependency on -Google. +*FIX* ~~Include font files for static loading without dependency on +Google.~~ Kept webfonts from google as local fonts are not working for +now. *NEW* Updated text strings to better reflect environment data availability. diff --git a/pkgdown.yml b/pkgdown.yml index 429f5112..f743a093 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -7,7 +7,7 @@ articles: missingness: missingness.html session: session.html visuals: visuals.html -last_built: 2026-02-28T11:24Z +last_built: 2026-03-02T19:39Z urls: reference: https://agdamsbo.github.io/FreesearchR/reference article: https://agdamsbo.github.io/FreesearchR/articles diff --git a/reference/FreesearchR_theme.html b/reference/FreesearchR_theme.html new file mode 100644 index 00000000..d235cf1d --- /dev/null +++ b/reference/FreesearchR_theme.html @@ -0,0 +1,107 @@ + +Custom theme based on unity — FreesearchR_theme • FreesearchR + Skip to contents + + +
+
+
+ +
+

Custom theme based on unity

+
+ +
+

Usage

+
FreesearchR_theme(
+  ...,
+  version = 5,
+  primary = FreesearchR_colors("primary"),
+  secondary = FreesearchR_colors("secondary"),
+  bootswatch = "united",
+  base_font = bslib::font_google("Montserrat"),
+  heading_font = bslib::font_google("Public Sans", wght = "700"),
+  code_font = bslib::font_google("Open Sans"),
+  success = FreesearchR_colors("success"),
+  info = FreesearchR_colors("info"),
+  warning = FreesearchR_colors("warning"),
+  danger = FreesearchR_colors("danger")
+)
+
+ +
+

Arguments

+ + +
...
+

everything passed on to bslib::bs_theme()

+ +
+
+

Value

+

theme list

+
+ +
+

Examples

+
if (interactive()) {
+bs_theme_preview(FreesearchR_theme)
+}
+
+
+
+
+ + +
+ + + +
+ + + + + + + diff --git a/reference/FreesearchR_theme.md b/reference/FreesearchR_theme.md new file mode 100644 index 00000000..71d7a56f --- /dev/null +++ b/reference/FreesearchR_theme.md @@ -0,0 +1,40 @@ +# Custom theme based on unity + +Custom theme based on unity + +## Usage + +``` r +FreesearchR_theme( + ..., + version = 5, + primary = FreesearchR_colors("primary"), + secondary = FreesearchR_colors("secondary"), + bootswatch = "united", + base_font = bslib::font_google("Montserrat"), + heading_font = bslib::font_google("Public Sans", wght = "700"), + code_font = bslib::font_google("Open Sans"), + success = FreesearchR_colors("success"), + info = FreesearchR_colors("info"), + warning = FreesearchR_colors("warning"), + danger = FreesearchR_colors("danger") +) +``` + +## Arguments + +- ...: + + everything passed on to bslib::bs_theme() + +## Value + +theme list + +## Examples + +``` r +if (interactive()) { +bs_theme_preview(FreesearchR_theme) +} +``` diff --git a/reference/baseline_table.html b/reference/baseline_table.html index 2e2b3d9e..ae96ffe3 100644 --- a/reference/baseline_table.html +++ b/reference/baseline_table.html @@ -84,7 +84,7 @@

Examples

mtcars |> baseline_table()
-
+
@@ -113,7 +113,7 @@
Characteristic N = 3211 (3.1%)
    8 1 (3.1%)
1 Median (Q1, Q3); n (%)
mtcars |> baseline_table(fun.args = list(by = "gear")) -
+
Characteristic 3
diff --git a/reference/create_baseline.html b/reference/create_baseline.html index 87e74f39..9e35b97e 100644 --- a/reference/create_baseline.html +++ b/reference/create_baseline.html @@ -100,7 +100,7 @@

Examples

mtcars |> create_baseline(by.var = "gear", add.p = "yes" == "yes")
-
+
Characteristic 3
@@ -188,7 +188,7 @@ N = 5
1 (20)
1 Kruskal-Wallis rank sum test; Fisher’s exact test
mtcars |> create_baseline(by.var = "gear", detail_level = "extended") -
+
Characteristic 3
@@ -321,7 +321,7 @@ N = 5
0 (0) 0 (0) 1 (20)
mtcars |> create_baseline(by.var = "gear", detail_level = "extended",type = list(gtsummary::all_dichotomous() ~ "categorical"),theme="nejm") -
+
Characteristic 3
@@ -402,7 +402,7 @@ N = 5
1 (20)
1 Median (IQR); n (%)
create_baseline(default_parsing(mtcars), by.var = "am", add.p = FALSE, add.overall = FALSE, theme = "lancet") -
+
Characteristic FALSE
diff --git a/reference/create_log_tics.html b/reference/create_log_tics.html index f73a9480..2b1eea42 100644 --- a/reference/create_log_tics.html +++ b/reference/create_log_tics.html @@ -67,7 +67,7 @@

Examples

c(sample(seq(.1, 1, .1), 3), sample(1:10, 3)) |> create_log_tics()
-#>  [1]  0.10  0.20  0.30  0.50  0.90  1.00  1.11  2.00  3.33  5.00 10.00
+#>  [1]  0.10  0.12  0.20  0.25  0.50  1.00  2.00  4.00  5.00  8.00 10.00