updated docs

NAMESPACE

@@ -14,6 +14,7 @@ export(clean_date)
 export(clean_sep)
 export(columnSelectInput)
 export(contrast_text)
+export(cor_demo_app)
 export(create_baseline)
 export(create_log_tics)
 export(create_overview_datagrid)

R/app_version.R

@@ -1 +1 @@
-app_version <- function()'250326_1206'
+app_version <- function()'250331_1248'

R/correlations-module.R

@@ -133,6 +133,15 @@ sentence_paste <- function(data, and.str = "and") {
 }
 
 
+#' Correlations plot demo app
+#'
+#' @returns
+#' @export
+#'
+#' @examples
+#' \dontrun{
+#' cor_demo_app()
+#' }
 cor_demo_app <- function() {
   ui <- shiny::fluidPage(
     shiny::sliderInput(
@@ -152,4 +161,3 @@ cor_demo_app <- function() {
   shiny::shinyApp(ui, server)
 }
 
-cor_demo_app()

R/helpers.R

@@ -342,3 +342,24 @@ data_description <- function(data) {
     signif(100 * p_complete, 3)
   )
 }
+
+#' Drop-in replacement for the base::sort_by with option to remove NAs
+#'
+#' @param x x
+#' @param y y
+#' @param na.rm remove NAs
+#' @param ... passed to base_sort_by
+#'
+#' @returns
+#' @export
+#'
+#' @examples
+#' sort_by(c("Multivariable", "Univariable"),c("Univariable","Minimal","Multivariable"))
+sort_by <- function(x,y,na.rm=FALSE,...){
+  out <- base::sort_by(x,y,...)
+  if (na.rm==TRUE){
+    out[!is.na(out)]
+  } else {
+    out
+  }
+}

R/regression_plot.R

@@ -91,7 +91,7 @@ merge_long <- function(list, model.names) {
       setNames(d, gsub("_[0-9]{,}$", "", names(d)))
     }) |>
     dplyr::bind_rows() |>
-    dplyr::mutate(model = as_factor(model))
+    dplyr::mutate(model = REDCapCAST::as_factor(model))
 
   l_merged$table_body <- df_body_long
 

R/theme.R

@@ -52,8 +52,7 @@ gg_theme_shiny <- function(){
       legend.title = ggplot2::element_text(size = 18),
       legend.text = ggplot2::element_text(size = 14),
       plot.title = ggplot2::element_text(size = 24),
-      plot.subtitle = ggplot2::element_text(size = 18),
+      plot.subtitle = ggplot2::element_text(size = 18)
-      legend.position = "none"
     )
 }
 

inst/apps/FreesearchR/app.R

@@ -10,7 +10,7 @@
 #### Current file: R//app_version.R 
 ########
 
-app_version <- function()'250326_1206'
+app_version <- function()'250331_1248'
 
 
 ########
@@ -289,6 +289,15 @@ sentence_paste <- function(data, and.str = "and") {
 }
 
 
+#' Correlations plot demo app
+#'
+#' @returns
+#' @export
+#'
+#' @examples
+#' \dontrun{
+#' cor_demo_app()
+#' }
 cor_demo_app <- function() {
   ui <- shiny::fluidPage(
     shiny::sliderInput(
@@ -308,7 +317,6 @@ cor_demo_app <- function() {
   shiny::shinyApp(ui, server)
 }
 
-cor_demo_app()
 
 
 ########
@@ -5417,7 +5425,7 @@ merge_long <- function(list, model.names) {
       setNames(d, gsub("_[0-9]{,}$", "", names(d)))
     }) |>
     dplyr::bind_rows() |>
-    dplyr::mutate(model = as_factor(model))
+    dplyr::mutate(model = REDCapCAST::as_factor(model))
 
   l_merged$table_body <- df_body_long
 
@@ -5781,8 +5789,7 @@ gg_theme_shiny <- function(){
       legend.title = ggplot2::element_text(size = 18),
       legend.text = ggplot2::element_text(size = 14),
       plot.title = ggplot2::element_text(size = 24),
-      plot.subtitle = ggplot2::element_text(size = 18),
+      plot.subtitle = ggplot2::element_text(size = 18)
-      legend.position = "none"
     )
 }
 
@@ -8541,9 +8548,9 @@ server <- function(input, output, session) {
     alt = "Regression coefficient plot"
   )
 
-  shiny::conditionalPanel(
+  # shiny::conditionalPanel(
-    condition = "output.uploaded == 'yes'",
+  #   condition = "output.uploaded == 'yes'",
-  )
+  # )
 
   ##############################################################################
   #########

inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/freesearcheR.dcf

@@ -5,6 +5,6 @@ account: agdamsbo
 server: shinyapps.io
 hostUrl: https://api.shinyapps.io/v1
 appId: 13611288
-bundleId: 9994404
+bundleId: 10005865
 url: https://agdamsbo.shinyapps.io/freesearcheR/
 version: 1

inst/apps/FreesearchR/server.R

@@ -844,9 +844,9 @@ server <- function(input, output, session) {
     alt = "Regression coefficient plot"
   )
 
-  shiny::conditionalPanel(
+  # shiny::conditionalPanel(
-    condition = "output.uploaded == 'yes'",
+  #   condition = "output.uploaded == 'yes'",
-  )
+  # )
 
   ##############################################################################
   #########

man/cor_demo_app.Rd

@@ -0,0 +1,16 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/correlations-module.R
+\name{cor_demo_app}
+\alias{cor_demo_app}
+\title{Correlations plot demo app}
+\usage{
+cor_demo_app()
+}
+\description{
+Correlations plot demo app
+}
+\examples{
+\dontrun{
+cor_demo_app()
+}
+}