From f45ced30835ca672406e789742853bc2bbc2f45b Mon Sep 17 00:00:00 2001
From: Andreas Gammelgaard Damsbo <andreas@gdamsbo.dk>
Date: Wed, 30 Apr 2025 09:11:00 +0200
Subject: [PATCH] cleanup - docs analytics runs

---
 R/sysdata.rda                                 | Bin 2044 -> 1932 bytes
 SESSION.md                                    |  14 ++------------
 _pkgdown.yml                                  |   5 ++---
 .../shinyapps.io/agdamsbo/FreesearchR.dcf     |   2 +-
 inst/apps/FreesearchR/ui.R                    |   5 ++++-
 ...ext-white-250.png => FreesearchR-logo.png} | Bin
 inst/apps/FreesearchR/www/intro.md            |   2 +-
 umami-page.html                               |   1 -
 8 files changed, 10 insertions(+), 19 deletions(-)
 rename inst/apps/FreesearchR/www/{logo-text-white-250.png => FreesearchR-logo.png} (100%)
 delete mode 100644 umami-page.html

diff --git a/R/sysdata.rda b/R/sysdata.rda
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diff --git a/SESSION.md b/SESSION.md
index a01a188..cffa461 100644
--- a/SESSION.md
+++ b/SESSION.md
@@ -24,21 +24,18 @@
 |package       |loadedversion |date       |source         |
 |:-------------|:-------------|:----------|:--------------|
 |apexcharter   |0.4.4         |2024-09-06 |CRAN (R 4.4.1) |
-|askpass       |1.2.1         |2024-10-04 |CRAN (R 4.4.1) |
 |assertthat    |0.2.1         |2019-03-21 |CRAN (R 4.4.1) |
 |backports     |1.5.0         |2024-05-23 |CRAN (R 4.4.1) |
-|bayestestR    |0.15.2        |2025-04-28 |CRAN (R 4.4.1) |
+|bayestestR    |0.15.3        |2025-04-28 |CRAN (R 4.4.1) |
 |bit           |4.6.0         |2025-03-06 |CRAN (R 4.4.1) |
 |bit64         |4.6.0-1       |2025-01-16 |CRAN (R 4.4.1) |
 |boot          |1.3-31        |2024-08-28 |CRAN (R 4.4.1) |
 |broom         |1.0.8         |2025-03-28 |CRAN (R 4.4.1) |
-|broom.helpers |1.20.0        |2025-04-24 |CRAN (R 4.4.1) |
+|broom.helpers |1.21.0        |2025-04-24 |CRAN (R 4.4.1) |
 |bsicons       |0.1.2         |2023-11-04 |CRAN (R 4.4.0) |
 |bslib         |0.9.0         |2025-01-30 |CRAN (R 4.4.1) |
 |cachem        |1.1.0         |2024-05-16 |CRAN (R 4.4.1) |
-|callr         |3.7.6         |2024-03-25 |CRAN (R 4.4.0) |
 |cellranger    |1.1.0         |2016-07-27 |CRAN (R 4.4.0) |
-|cffr          |1.2.0         |2025-01-25 |CRAN (R 4.4.1) |
 |class         |7.3-23        |2025-01-01 |CRAN (R 4.4.1) |
 |classInt      |0.4-11        |2025-01-08 |CRAN (R 4.4.1) |
 |cli           |3.6.5         |2025-04-23 |CRAN (R 4.4.1) |
@@ -46,7 +43,6 @@
 |correlation   |0.8.7         |2025-03-03 |CRAN (R 4.4.1) |
 |crayon        |1.5.3         |2024-06-20 |CRAN (R 4.4.1) |
 |crosstalk     |1.2.1         |2023-11-23 |CRAN (R 4.4.0) |
-|curl          |6.2.2         |2025-03-24 |CRAN (R 4.4.1) |
 |data.table    |1.17.0        |2025-02-22 |CRAN (R 4.4.1) |
 |datamods      |1.5.3         |2024-10-02 |CRAN (R 4.4.1) |
 |datawizard    |1.0.2         |2025-03-24 |CRAN (R 4.4.1) |
@@ -65,7 +61,6 @@
 |fastmap       |1.2.0         |2024-05-15 |CRAN (R 4.4.1) |
 |fontawesome   |0.5.3         |2024-11-16 |CRAN (R 4.4.1) |
 |forcats       |1.0.0         |2023-01-29 |CRAN (R 4.4.0) |
-|FreesearchR   |25.4.4        |NA         |NA             |
 |fs            |1.6.6         |2025-04-12 |CRAN (R 4.4.1) |
 |generics      |0.1.3         |2022-07-05 |CRAN (R 4.4.1) |
 |ggplot2       |3.5.2         |2025-04-09 |CRAN (R 4.4.1) |
@@ -83,9 +78,7 @@
 |insight       |1.2.0         |2025-04-22 |CRAN (R 4.4.1) |
 |jquerylib     |0.1.4         |2021-04-26 |CRAN (R 4.4.0) |
 |jsonlite      |2.0.0         |2025-03-27 |CRAN (R 4.4.1) |
-|jsonvalidate  |1.5.0         |2025-02-07 |CRAN (R 4.4.1) |
 |KernSmooth    |2.23-26       |2025-01-01 |CRAN (R 4.4.1) |
-|keyring       |1.3.2         |2023-12-11 |CRAN (R 4.4.0) |
 |knitr         |1.50          |2025-03-16 |CRAN (R 4.4.1) |
 |later         |1.4.2         |2025-04-08 |CRAN (R 4.4.1) |
 |lattice       |0.22-7        |2025-04-02 |CRAN (R 4.4.1) |
@@ -101,7 +94,6 @@
 |modelbased    |0.10.0        |2025-03-10 |CRAN (R 4.4.1) |
 |nlme          |3.1-168       |2025-03-31 |CRAN (R 4.4.1) |
 |nloptr        |2.2.1         |2025-03-17 |CRAN (R 4.4.1) |
-|openssl       |2.3.2         |2025-02-03 |CRAN (R 4.4.1) |
 |parameters    |0.24.2        |2025-03-04 |CRAN (R 4.4.1) |
 |patchwork     |1.3.0         |2024-09-16 |CRAN (R 4.4.1) |
 |performance   |0.13.0        |2025-01-15 |CRAN (R 4.4.1) |
@@ -109,7 +101,6 @@
 |pillar        |1.10.2        |2025-04-05 |CRAN (R 4.4.1) |
 |pkgbuild      |1.4.7         |2025-03-24 |CRAN (R 4.4.1) |
 |pkgconfig     |2.0.3         |2019-09-22 |CRAN (R 4.4.1) |
-|pkgdown       |2.1.1         |2025-04-28 |CRAN (R 4.4.1) |
 |pkgload       |1.4.0         |2024-06-28 |CRAN (R 4.4.0) |
 |processx      |3.8.6         |2025-02-21 |CRAN (R 4.4.1) |
 |profvis       |0.4.0         |2024-09-20 |CRAN (R 4.4.1) |
@@ -152,7 +143,6 @@
 |tzdb          |0.5.0         |2025-03-15 |CRAN (R 4.4.1) |
 |urlchecker    |1.0.1         |2021-11-30 |CRAN (R 4.4.1) |
 |usethis       |3.1.0         |2024-11-26 |CRAN (R 4.4.1) |
-|V8            |6.0.3         |2025-03-26 |CRAN (R 4.4.1) |
 |vctrs         |0.6.5         |2023-12-01 |CRAN (R 4.4.0) |
 |vroom         |1.6.5         |2023-12-05 |CRAN (R 4.4.0) |
 |withr         |3.0.2         |2024-10-28 |CRAN (R 4.4.1) |
diff --git a/_pkgdown.yml b/_pkgdown.yml
index decca44..47ca9e1 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -10,6 +10,8 @@ template:
     # code_font: {google: "Open Sans"}
   # Adding the switch destroys the theme colors
   light-switch: false
+  includes:
+    in_header: <script defer src="https://analytics.gdamsbo.dk/script.js" data-website-id="1f3baf18-29aa-4612-931b-58ea35922ae4"></script>
 
 navbar:
   bg: primary
@@ -24,9 +26,6 @@ navbar:
       text: Q&A
       href: QA.md
 
-includes:
-  in_header: umami-page.html
-
 footer:
   structure:
     left: built_with
diff --git a/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf b/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf
index fd202e7..b42b77a 100644
--- a/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf
+++ b/inst/apps/FreesearchR/rsconnect/shinyapps.io/agdamsbo/FreesearchR.dcf
@@ -5,6 +5,6 @@ account: agdamsbo
 server: shinyapps.io
 hostUrl: https://api.shinyapps.io/v1
 appId: 14600805
-bundleId: 10199738
+bundleId: 10199884
 url: https://agdamsbo.shinyapps.io/FreesearchR/
 version: 1
diff --git a/inst/apps/FreesearchR/ui.R b/inst/apps/FreesearchR/ui.R
index 61c773d..3e79294 100644
--- a/inst/apps/FreesearchR/ui.R
+++ b/inst/apps/FreesearchR/ui.R
@@ -511,10 +511,13 @@ dark <- custom_theme(
 ui <- bslib::page_fixed(
   prismDependencies,
   prismRDependency,
+  ## Basic Umami page tracking
   shiny::tags$head(
     includeHTML(("www/umami-app.html")),
     tags$link(rel = "stylesheet", type = "text/css", href = "style.css")),
-  tags$head(tags$link(rel="shortcut icon", href="favicon.svg")),
+  ## This adds the actual favicon
+  ## png and ico versions are kept for compatibility
+  shiny::tags$head(tags$link(rel="shortcut icon", href="favicon.svg")),
   title = "FreesearchR",
   theme = light,
   shiny::useBusyIndicators(),
diff --git a/inst/apps/FreesearchR/www/logo-text-white-250.png b/inst/apps/FreesearchR/www/FreesearchR-logo.png
similarity index 100%
rename from inst/apps/FreesearchR/www/logo-text-white-250.png
rename to inst/apps/FreesearchR/www/FreesearchR-logo.png
diff --git a/inst/apps/FreesearchR/www/intro.md b/inst/apps/FreesearchR/www/intro.md
index d34e698..aa84e17 100644
--- a/inst/apps/FreesearchR/www/intro.md
+++ b/inst/apps/FreesearchR/www/intro.md
@@ -1,4 +1,4 @@
-# Welcome <img style="float: right;" src="logo-text-white-250.png">
+# Welcome <img style="float: right;" src="FreesearchR-logo.png">
 
 This is the ***FreesearchR*** data analysis tool. We intend the ***FreesearchR*** to be a powerful and free tool for easy data evaluation and analysis at the hands of the clinician. If you need more advanced tools for regression models or plotting, you'll probably be better off using *R* or similar directly on your own machine.
 
diff --git a/umami-page.html b/umami-page.html
deleted file mode 100644
index 1270d51..0000000
--- a/umami-page.html
+++ /dev/null
@@ -1 +0,0 @@
-<script defer src="https://analytics.gdamsbo.dk/script.js" data-website-id="e7d4e13a-5824-4778-bbc0-8f92fb08303a"></script>