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version bump - regression - data overview

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Andreas Gammelgaard Damsbo 2025-04-02 11:31:04 +02:00
commit f249aaa9ab
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29 changed files with 2888 additions and 1239 deletions
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38
R/regression_table.R
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@ -24,7 +24,8 @@
#' formula.str = "{outcome.str}~.",
#' args.list = NULL
#' ) |>
#' regression_table() |> plot()
#' regression_table() |>
#' plot()
#' gtsummary::trial |>
#' regression_model(
#' outcome.str = "trt",
@ -61,7 +62,7 @@
#' }) |>
#' purrr::map(regression_table) |>
#' tbl_merge()
#' }
#' }
#' regression_table <- function(x, ...) {
#' UseMethod("regression_table")
#' }
@ -94,9 +95,8 @@
#' gtsummary::add_glance_source_note() # |>
#' # gtsummary::bold_p()
#' }
regression_table <- function(x, ...) {
if ("list" %in% class(x)){
if ("list" %in% class(x)) {
x |>
purrr::map(\(.m){
regression_table_create(x = .m, ...) |>
@ -104,24 +104,42 @@ regression_table <- function(x, ...) {
}) |>
gtsummary::tbl_stack()
} else {
regression_table_create(x,...)
regression_table_create(x, ...)
}
}
regression_table_create <- function(x, ..., args.list = NULL, fun = "gtsummary::tbl_regression") {
regression_table_create <- function(x, ..., args.list = NULL, fun = "gtsummary::tbl_regression", theme = c("jama", "lancet", "nejm", "qjecon")) {
# Stripping custom class
class(x) <- class(x)[class(x) != "freesearchr_model"]
theme <- match.arg(theme)
if (any(c(length(class(x)) != 1, class(x) != "lm"))) {
if (!"exponentiate" %in% names(args.list)) {
args.list <- c(args.list, list(exponentiate = TRUE, p.values = TRUE))
}
}
out <- do.call(getfun(fun), c(list(x = x), args.list))
out #|>
# gtsummary::add_glance_source_note() # |>
# gtsummary::bold_p()
gtsummary::theme_gtsummary_journal(journal = theme)
if (inherits(x, "polr")) {
# browser()
out <- do.call(getfun(fun), c(list(x = x), args.list))
# out <- do.call(getfun(fun), c(list(x = x, tidy_fun = list(residual_type = "normal")), args.list))
# out <- do.call(what = getfun(fun),
# args = c(
# list(
# x = x,
# tidy_fun = list(
# conf.int = TRUE,
# conf.level = 0.95,
# residual_type = "normal")),
# args.list)
# )
} else {
out <- do.call(getfun(fun), c(list(x = x), args.list))
}
out
}