andreas/FreesearchR
1
0
Fork 0
mirror of https://github.com/agdamsbo/FreesearchR.git synced 2026-06-19 12:37:30 +02:00
Code Issues Projects Releases Packages Wiki Activity

version bump - regression - data overview

Browse source
This commit is contained in:
Andreas Gammelgaard Damsbo 2025-04-02 11:31:04 +02:00
commit f249aaa9ab
No known key found for this signature in database
29 changed files with 2888 additions and 1239 deletions
Download patch file Download diff file Expand all files Collapse all files

19
R/baseline_table.R
View file

@ -34,21 +34,25 @@ baseline_table <- function(data, fun.args = NULL, fun = gtsummary::tbl_summary,
#' @export
#'
#' @examples
#' mtcars |> create_baseline(by.var = "gear", add.p="yes"=="yes")
create_baseline <- function(data,...,by.var,add.p=FALSE,add.overall=FALSE){
#' mtcars |> create_baseline(by.var = "gear", add.p = "yes" == "yes")
create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALSE, theme=c("jama", "lancet", "nejm", "qjecon")) {
theme <- match.arg(theme)
if (by.var == "none" | !by.var %in% names(data)) {
by.var <- NULL
}
## These steps are to handle logicals/booleans, that messes up the order of columns
## Has been reported
## Has been reported and should be fixed soon (02042025)
if (!is.null(by.var)) {
if (identical("logical",class(data[[by.var]]))){
if (identical("logical", class(data[[by.var]]))) {
data[by.var] <- as.character(data[[by.var]])
}
}
gtsummary::theme_gtsummary_journal(journal = theme)
out <- data |>
baseline_table(
fun.args =
@ -59,16 +63,15 @@ create_baseline <- function(data,...,by.var,add.p=FALSE,add.overall=FALSE){
)
if (!is.null(by.var)) {
if (isTRUE(add.overall)){
out <- out |> gtsummary::add_overall()
if (isTRUE(add.overall)) {
out <- out |> gtsummary::add_overall()
}
if (isTRUE(add.p)) {
out <- out |>
gtsummary::add_p() |>
gtsummary::bold_p()
}
}
}
out
}