revised table export
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This commit is contained in:
Andreas Gammelgaard Damsbo 2025-12-12 18:09:06 +01:00
parent d9614eb37f
commit ed74e0492c
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7 changed files with 54 additions and 41 deletions

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@ -71,12 +71,7 @@ Imports:
stRoke, stRoke,
data.table, data.table,
viridis, viridis,
smd, smd
doconv,
locatexec,
magick,
pdftools,
qpdf
Suggests: Suggests:
styler, styler,
devtools, devtools,

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@ -4,7 +4,7 @@
*NEW* Updated and slightly extended list of allowed operators for new variable creation. *NEW* Updated and slightly extended list of allowed operators for new variable creation.
*FIX* The exported MS Word documents prompted a warning. I believe that has been fixed, but required several new dependencies. *FIX* The exported MS Word documents prompts a warning. The codebase now includes a fix, but it only works running locally, but was disabled.
# FreesearchR 25.12.5 # FreesearchR 25.12.5

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@ -11,7 +11,7 @@ table_download_ui <- function(id, title = "Table", ...) {
selected = NULL, selected = NULL,
choices = list( choices = list(
"MS Word" = "docx", "MS Word" = "docx",
"Open document format" = "rtf" "Compatible (rtf)" = "rtf"
) )
), ),
shiny::br(), shiny::br(),
@ -66,11 +66,14 @@ table_download_server <- function(id, data, file_name = "table", ...) {
data = table, data = table,
filename = file # Save to the file path provided by downloadHandler filename = file # Save to the file path provided by downloadHandler
) )
if (type == "docx") { # This only works locally and was disabled
out |> doconv::docx_update() # if (type == "docx") {
} else { # out |> doconv::docx_update()
out # } else {
} # out
# }
out
}, },
error = function(err) { error = function(err) {
shiny::showNotification(paste0(i18n$t("Error: "), err), type = "error") shiny::showNotification(paste0(i18n$t("Error: "), err), type = "error")

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@ -26,6 +26,8 @@
|apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) | |apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) |
|askpass |1.2.1 |2024-10-04 |CRAN (R 4.4.1) | |askpass |1.2.1 |2024-10-04 |CRAN (R 4.4.1) |
|assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) | |assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) |
|attachment |0.4.5 |2025-03-14 |CRAN (R 4.4.1) |
|attempt |0.3.1 |2020-05-03 |CRAN (R 4.4.1) |
|backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) | |backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) |
|base64enc |0.1-3 |2015-07-28 |CRAN (R 4.4.1) | |base64enc |0.1-3 |2015-07-28 |CRAN (R 4.4.1) |
|bayestestR |0.17.0 |2025-08-29 |CRAN (R 4.4.1) | |bayestestR |0.17.0 |2025-08-29 |CRAN (R 4.4.1) |
@ -63,6 +65,7 @@
|devtools |2.4.6 |2025-10-03 |CRAN (R 4.4.1) | |devtools |2.4.6 |2025-10-03 |CRAN (R 4.4.1) |
|DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) | |DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) |
|digest |0.6.39 |2025-11-19 |CRAN (R 4.4.3) | |digest |0.6.39 |2025-11-19 |CRAN (R 4.4.3) |
|dockerfiler |0.2.5 |2025-05-07 |CRAN (R 4.4.1) |
|doconv |0.3.3 |2025-08-18 |CRAN (R 4.4.1) | |doconv |0.3.3 |2025-08-18 |CRAN (R 4.4.1) |
|doParallel |1.0.17 |2022-02-07 |CRAN (R 4.4.0) | |doParallel |1.0.17 |2022-02-07 |CRAN (R 4.4.0) |
|dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) | |dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) |
@ -208,6 +211,7 @@
|sessioninfo |1.2.3 |2025-02-05 |CRAN (R 4.4.1) | |sessioninfo |1.2.3 |2025-02-05 |CRAN (R 4.4.1) |
|shiny |1.12.1 |2025-12-09 |CRAN (R 4.4.1) | |shiny |1.12.1 |2025-12-09 |CRAN (R 4.4.1) |
|shiny.i18n |0.3.0 |2023-01-16 |CRAN (R 4.4.0) | |shiny.i18n |0.3.0 |2023-01-16 |CRAN (R 4.4.0) |
|shiny2docker |0.0.3 |2025-06-28 |CRAN (R 4.4.1) |
|shinybusy |0.3.3 |2024-03-09 |CRAN (R 4.4.0) | |shinybusy |0.3.3 |2024-03-09 |CRAN (R 4.4.0) |
|shinyjs |2.1.0 |2021-12-23 |CRAN (R 4.4.0) | |shinyjs |2.1.0 |2021-12-23 |CRAN (R 4.4.0) |
|shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) | |shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) |
@ -242,4 +246,5 @@
|xml2 |1.5.1 |2025-12-01 |CRAN (R 4.4.3) | |xml2 |1.5.1 |2025-12-01 |CRAN (R 4.4.3) |
|xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) | |xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) |
|yaml |2.3.11 |2025-11-28 |CRAN (R 4.4.3) | |yaml |2.3.11 |2025-11-28 |CRAN (R 4.4.3) |
|yesno |0.1.3 |2024-07-26 |CRAN (R 4.4.1) |
|zip |2.3.3 |2025-05-13 |CRAN (R 4.4.1) | |zip |2.3.3 |2025-05-13 |CRAN (R 4.4.1) |

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@ -1,7 +1,7 @@
######## ########
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpaYL5kU/file9c7175d0a25d.R #### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpaYL5kU/file9c7113e28000.R
######## ########
i18n_path <- here::here("translations") i18n_path <- here::here("translations")
@ -9855,7 +9855,7 @@ table_download_ui <- function(id, title = "Table", ...) {
selected = NULL, selected = NULL,
choices = list( choices = list(
"MS Word" = "docx", "MS Word" = "docx",
"Open document format" = "rtf" "Compatible (rtf)" = "rtf"
) )
), ),
shiny::br(), shiny::br(),
@ -9910,11 +9910,14 @@ table_download_server <- function(id, data, file_name = "table", ...) {
data = table, data = table,
filename = file # Save to the file path provided by downloadHandler filename = file # Save to the file path provided by downloadHandler
) )
if (type == "docx") { # This only works locally and was disabled
out |> doconv::docx_update() # if (type == "docx") {
} else { # out |> doconv::docx_update()
out # } else {
} # out
# }
out
}, },
error = function(err) { error = function(err) {
shiny::showNotification(paste0(i18n$t("Error: "), err), type = "error") shiny::showNotification(paste0(i18n$t("Error: "), err), type = "error")
@ -14114,14 +14117,16 @@ server <- function(input, output, session) {
output_format = format, output_format = format,
input = file.path(getwd(), "www/report.rmd") input = file.path(getwd(), "www/report.rmd")
) )
# This only works locally and was disabled
# if (type == "docx") {
# ## This handles the the following MS Word warning:
# ## >> "This document contains fields that may refer to other files."
# out |> doconv::docx_update()
# } else {
# out
# }
if (type == "docx") { out
## This handles the the following MS Word warning:
## >> "This document contains fields that may refer to other files."
out |> doconv::docx_update()
} else {
out
}
}, },
error = function(err) { error = function(err) {
showNotification(paste0(i18n$t("We encountered the following error creating your report: "), err), type = "err") showNotification(paste0(i18n$t("We encountered the following error creating your report: "), err), type = "err")

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@ -1,7 +1,7 @@
######## ########
#### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpaYL5kU/file9c716ca74d18.R #### Current file: /var/folders/9l/xbc19wxx0g79jdd2sf_0v291mhwh7f/T//RtmpaYL5kU/file9c715011d086.R
######## ########
i18n_path <- system.file("translations", package = "FreesearchR") i18n_path <- system.file("translations", package = "FreesearchR")
@ -9855,7 +9855,7 @@ table_download_ui <- function(id, title = "Table", ...) {
selected = NULL, selected = NULL,
choices = list( choices = list(
"MS Word" = "docx", "MS Word" = "docx",
"Open document format" = "rtf" "Compatible (rtf)" = "rtf"
) )
), ),
shiny::br(), shiny::br(),
@ -9910,11 +9910,14 @@ table_download_server <- function(id, data, file_name = "table", ...) {
data = table, data = table,
filename = file # Save to the file path provided by downloadHandler filename = file # Save to the file path provided by downloadHandler
) )
if (type == "docx") { # This only works locally and was disabled
out |> doconv::docx_update() # if (type == "docx") {
} else { # out |> doconv::docx_update()
out # } else {
} # out
# }
out
}, },
error = function(err) { error = function(err) {
shiny::showNotification(paste0(i18n$t("Error: "), err), type = "error") shiny::showNotification(paste0(i18n$t("Error: "), err), type = "error")
@ -14114,14 +14117,16 @@ server <- function(input, output, session) {
output_format = format, output_format = format,
input = file.path(getwd(), "www/report.rmd") input = file.path(getwd(), "www/report.rmd")
) )
# This only works locally and was disabled
# if (type == "docx") {
# ## This handles the the following MS Word warning:
# ## >> "This document contains fields that may refer to other files."
# out |> doconv::docx_update()
# } else {
# out
# }
if (type == "docx") { out
## This handles the the following MS Word warning:
## >> "This document contains fields that may refer to other files."
out |> doconv::docx_update()
} else {
out
}
}, },
error = function(err) { error = function(err) {
showNotification(paste0(i18n$t("We encountered the following error creating your report: "), err), type = "err") showNotification(paste0(i18n$t("We encountered the following error creating your report: "), err), type = "err")