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Andreas Gammelgaard Damsbo 2025-04-30 13:03:20 +02:00
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commit e64f9c5d17
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13
R/regression-module.R
View file

@ -482,6 +482,7 @@ regression_server <- function(id,
## To avoid plotting old models on fail/error ## To avoid plotting old models on fail/error
rv$list$regression$tables <- NULL rv$list$regression$tables <- NULL
# browser()
tryCatch( tryCatch(
{ {
parameters <- list( parameters <- list(
@ -517,17 +518,9 @@ regression_server <- function(id,
) )
}) })
list(
rv$code$import,
rlang::call2(.fn = "select", !!!list(input$import_var), .ns = "dplyr"),
rlang::call2(.fn = "default_parsing", .ns = "FreesearchR")
) |>
merge_expression() |>
expression_string()
rv$list$regression$tables <- out rv$list$regression$tables <- out
rv$list$input <- input rv$list$input <- input
}, },
warning = function(warn) { warning = function(warn) {
showNotification(paste0(warn), type = "warning") showNotification(paste0(warn), type = "warning")
@ -639,7 +632,7 @@ regression_server <- function(id,
############################################################################## ##############################################################################
return(shiny::reactive({ return(shiny::reactive({
return(rv$list) rv$list
})) }))
} }
) )

BIN
R/sysdata.rda
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2
R/theme.R
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@ -54,7 +54,7 @@ FreesearchR_colors <- function(choose = NULL) {
fg = "#000000" fg = "#000000"
) )
if (!is.null(choose)) { if (!is.null(choose)) {
out[choose] unname(out[choose])
} else { } else {
out out
} }

2
README.md
View file

@ -60,3 +60,5 @@ Like any other project, this project was never possible without the great work o
- [IDEAfilter](https://biogen-inc.github.io/IDEAFilter/): a visually appealing data filter function based on the [{shinyDataFilter}](https://github.com/dgkf/shinyDataFilter). - [IDEAfilter](https://biogen-inc.github.io/IDEAFilter/): a visually appealing data filter function based on the [{shinyDataFilter}](https://github.com/dgkf/shinyDataFilter).
This project was all written by a human and not by any AI-based tools. This project was all written by a human and not by any AI-based tools.
The online ***FreesearchR*** app contains a tracking script, transmitting minimal data on usage. No uploaded data is transmitted anywhere. Have a look at the [tracking data here](https://analytics.gdamsbo.dk/share/2i4BNpMcDMB9lJvF/agdamsbo.shinyapps.io). No tracking data is sent running the app locally (see above).

41
SESSION.md
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@ -22,29 +22,24 @@
----------------------------------- packages ----------------------------------- ----------------------------------- packages -----------------------------------
-------------------------------------------------------------------------------- --------------------------------------------------------------------------------
|package |loadedversion |date |source | |package |loadedversion |date |source |
|:-----------------|:-------------|:----------|:--------------| |:-------------|:-------------|:----------|:--------------|
|apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) | |apexcharter |0.4.4 |2024-09-06 |CRAN (R 4.4.1) |
|assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) | |assertthat |0.2.1 |2019-03-21 |CRAN (R 4.4.1) |
|backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) | |backports |1.5.0 |2024-05-23 |CRAN (R 4.4.1) |
|bayestestR |0.15.3 |2025-04-28 |CRAN (R 4.4.1) | |bayestestR |0.15.3 |2025-04-28 |CRAN (R 4.4.1) |
|bit |4.6.0 |2025-03-06 |CRAN (R 4.4.1) | |bit |4.6.0 |2025-03-06 |CRAN (R 4.4.1) |
|bit64 |4.6.0-1 |2025-01-16 |CRAN (R 4.4.1) | |bit64 |4.6.0-1 |2025-01-16 |CRAN (R 4.4.1) |
|bitops |1.0-9 |2024-10-03 |CRAN (R 4.4.1) |
|boot |1.3-31 |2024-08-28 |CRAN (R 4.4.1) | |boot |1.3-31 |2024-08-28 |CRAN (R 4.4.1) |
|broom |1.0.8 |2025-03-28 |CRAN (R 4.4.1) | |broom |1.0.8 |2025-03-28 |CRAN (R 4.4.1) |
|broom.helpers |1.21.0 |2025-04-24 |CRAN (R 4.4.1) | |broom.helpers |1.21.0 |2025-04-24 |CRAN (R 4.4.1) |
|bsicons |0.1.2 |2023-11-04 |CRAN (R 4.4.0) | |bsicons |0.1.2 |2023-11-04 |CRAN (R 4.4.0) |
|bslib |0.9.0 |2025-01-30 |CRAN (R 4.4.1) | |bslib |0.9.0 |2025-01-30 |CRAN (R 4.4.1) |
|cachem |1.1.0 |2024-05-16 |CRAN (R 4.4.1) | |cachem |1.1.0 |2024-05-16 |CRAN (R 4.4.1) |
|callr |3.7.6 |2024-03-25 |CRAN (R 4.4.0) |
|cards |0.6.0 |2025-04-11 |CRAN (R 4.4.1) |
|caTools |1.18.3 |2024-09-04 |CRAN (R 4.4.1) |
|cellranger |1.1.0 |2016-07-27 |CRAN (R 4.4.0) | |cellranger |1.1.0 |2016-07-27 |CRAN (R 4.4.0) |
|cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) | |cffr |1.2.0 |2025-01-25 |CRAN (R 4.4.1) |
|class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) | |class |7.3-23 |2025-01-01 |CRAN (R 4.4.1) |
|classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) | |classInt |0.4-11 |2025-01-08 |CRAN (R 4.4.1) |
|cli |3.6.5 |2025-04-23 |CRAN (R 4.4.1) | |cli |3.6.5 |2025-04-23 |CRAN (R 4.4.1) |
|codetools |0.2-20 |2024-03-31 |CRAN (R 4.4.1) |
|commonmark |1.9.5 |2025-03-17 |CRAN (R 4.4.1) | |commonmark |1.9.5 |2025-03-17 |CRAN (R 4.4.1) |
|correlation |0.8.7 |2025-03-03 |CRAN (R 4.4.1) | |correlation |0.8.7 |2025-03-03 |CRAN (R 4.4.1) |
|crayon |1.5.3 |2024-06-20 |CRAN (R 4.4.1) | |crayon |1.5.3 |2024-06-20 |CRAN (R 4.4.1) |
@ -53,12 +48,10 @@
|data.table |1.17.0 |2025-02-22 |CRAN (R 4.4.1) | |data.table |1.17.0 |2025-02-22 |CRAN (R 4.4.1) |
|datamods |1.5.3 |2024-10-02 |CRAN (R 4.4.1) | |datamods |1.5.3 |2024-10-02 |CRAN (R 4.4.1) |
|datawizard |1.0.2 |2025-03-24 |CRAN (R 4.4.1) | |datawizard |1.0.2 |2025-03-24 |CRAN (R 4.4.1) |
|DEoptimR |1.1-3-1 |2024-11-23 |CRAN (R 4.4.1) |
|desc |1.4.3 |2023-12-10 |CRAN (R 4.4.1) | |desc |1.4.3 |2023-12-10 |CRAN (R 4.4.1) |
|devtools |2.4.5 |2022-10-11 |CRAN (R 4.4.0) | |devtools |2.4.5 |2022-10-11 |CRAN (R 4.4.0) |
|DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) | |DHARMa |0.4.7 |2024-10-18 |CRAN (R 4.4.1) |
|digest |0.6.37 |2024-08-19 |CRAN (R 4.4.1) | |digest |0.6.37 |2024-08-19 |CRAN (R 4.4.1) |
|doParallel |1.0.17 |2022-02-07 |CRAN (R 4.4.0) |
|dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) | |dplyr |1.1.4 |2023-11-17 |CRAN (R 4.4.0) |
|DT |0.33 |2024-04-04 |CRAN (R 4.4.0) | |DT |0.33 |2024-04-04 |CRAN (R 4.4.0) |
|e1071 |1.7-16 |2024-09-16 |CRAN (R 4.4.1) | |e1071 |1.7-16 |2024-09-16 |CRAN (R 4.4.1) |
@ -70,11 +63,9 @@
|fastmap |1.2.0 |2024-05-15 |CRAN (R 4.4.1) | |fastmap |1.2.0 |2024-05-15 |CRAN (R 4.4.1) |
|fontawesome |0.5.3 |2024-11-16 |CRAN (R 4.4.1) | |fontawesome |0.5.3 |2024-11-16 |CRAN (R 4.4.1) |
|forcats |1.0.0 |2023-01-29 |CRAN (R 4.4.0) | |forcats |1.0.0 |2023-01-29 |CRAN (R 4.4.0) |
|foreach |1.5.2 |2022-02-02 |CRAN (R 4.4.0) |
|fs |1.6.6 |2025-04-12 |CRAN (R 4.4.1) | |fs |1.6.6 |2025-04-12 |CRAN (R 4.4.1) |
|generics |0.1.3 |2022-07-05 |CRAN (R 4.4.1) | |generics |0.1.3 |2022-07-05 |CRAN (R 4.4.1) |
|ggplot2 |3.5.2 |2025-04-09 |CRAN (R 4.4.1) | |ggplot2 |3.5.2 |2025-04-09 |CRAN (R 4.4.1) |
|ggstats |0.9.0 |2025-03-10 |CRAN (R 4.4.1) |
|glue |1.8.0 |2024-09-30 |CRAN (R 4.4.1) | |glue |1.8.0 |2024-09-30 |CRAN (R 4.4.1) |
|gt |1.0.0 |2025-04-05 |CRAN (R 4.4.1) | |gt |1.0.0 |2025-04-05 |CRAN (R 4.4.1) |
|gtable |0.3.6 |2024-10-25 |CRAN (R 4.4.1) | |gtable |0.3.6 |2024-10-25 |CRAN (R 4.4.1) |
@ -87,60 +78,41 @@
|httpuv |1.6.16 |2025-04-16 |CRAN (R 4.4.1) | |httpuv |1.6.16 |2025-04-16 |CRAN (R 4.4.1) |
|IDEAFilter |0.2.0 |2024-04-15 |CRAN (R 4.4.0) | |IDEAFilter |0.2.0 |2024-04-15 |CRAN (R 4.4.0) |
|insight |1.2.0 |2025-04-22 |CRAN (R 4.4.1) | |insight |1.2.0 |2025-04-22 |CRAN (R 4.4.1) |
|iterators |1.0.14 |2022-02-05 |CRAN (R 4.4.1) |
|jquerylib |0.1.4 |2021-04-26 |CRAN (R 4.4.0) | |jquerylib |0.1.4 |2021-04-26 |CRAN (R 4.4.0) |
|jsonlite |2.0.0 |2025-03-27 |CRAN (R 4.4.1) | |jsonlite |2.0.0 |2025-03-27 |CRAN (R 4.4.1) |
|jsonvalidate |1.5.0 |2025-02-07 |CRAN (R 4.4.1) | |jsonvalidate |1.5.0 |2025-02-07 |CRAN (R 4.4.1) |
|KernSmooth |2.23-26 |2025-01-01 |CRAN (R 4.4.1) | |KernSmooth |2.23-26 |2025-01-01 |CRAN (R 4.4.1) |
|keyring |1.3.2 |2023-12-11 |CRAN (R 4.4.0) |
|knitr |1.50 |2025-03-16 |CRAN (R 4.4.1) | |knitr |1.50 |2025-03-16 |CRAN (R 4.4.1) |
|labeling |0.4.3 |2023-08-29 |CRAN (R 4.4.1) |
|labelled |2.14.0 |2025-01-08 |CRAN (R 4.4.1) |
|later |1.4.2 |2025-04-08 |CRAN (R 4.4.1) | |later |1.4.2 |2025-04-08 |CRAN (R 4.4.1) |
|lattice |0.22-7 |2025-04-02 |CRAN (R 4.4.1) | |lattice |0.22-7 |2025-04-02 |CRAN (R 4.4.1) |
|lifecycle |1.0.4 |2023-11-07 |CRAN (R 4.4.1) | |lifecycle |1.0.4 |2023-11-07 |CRAN (R 4.4.1) |
|litedown |0.7 |2025-04-08 |CRAN (R 4.4.1) |
|lme4 |1.1-37 |2025-03-26 |CRAN (R 4.4.1) | |lme4 |1.1-37 |2025-03-26 |CRAN (R 4.4.1) |
|magrittr |2.0.3 |2022-03-30 |CRAN (R 4.4.1) | |magrittr |2.0.3 |2022-03-30 |CRAN (R 4.4.1) |
|markdown |2.0 |2025-03-23 |CRAN (R 4.4.1) |
|MASS |7.3-65 |2025-02-28 |CRAN (R 4.4.1) | |MASS |7.3-65 |2025-02-28 |CRAN (R 4.4.1) |
|Matrix |1.7-3 |2025-03-11 |CRAN (R 4.4.1) | |Matrix |1.7-3 |2025-03-11 |CRAN (R 4.4.1) |
|memoise |2.0.1 |2021-11-26 |CRAN (R 4.4.0) | |memoise |2.0.1 |2021-11-26 |CRAN (R 4.4.0) |
|mgcv |1.9-3 |2025-04-04 |CRAN (R 4.4.1) |
|mime |0.13 |2025-03-17 |CRAN (R 4.4.1) | |mime |0.13 |2025-03-17 |CRAN (R 4.4.1) |
|miniUI |0.1.2 |2025-04-17 |CRAN (R 4.4.1) | |miniUI |0.1.2 |2025-04-17 |CRAN (R 4.4.1) |
|minqa |1.2.8 |2024-08-17 |CRAN (R 4.4.1) | |minqa |1.2.8 |2024-08-17 |CRAN (R 4.4.1) |
|modelbased |0.10.0 |2025-03-10 |CRAN (R 4.4.1) | |modelbased |0.10.0 |2025-03-10 |CRAN (R 4.4.1) |
|nlme |3.1-168 |2025-03-31 |CRAN (R 4.4.1) | |nlme |3.1-168 |2025-03-31 |CRAN (R 4.4.1) |
|nloptr |2.2.1 |2025-03-17 |CRAN (R 4.4.1) | |nloptr |2.2.1 |2025-03-17 |CRAN (R 4.4.1) |
|opdisDownsampling |1.0.1 |2024-04-15 |CRAN (R 4.4.0) |
|openxlsx2 |1.15 |2025-04-25 |CRAN (R 4.4.1) |
|parameters |0.24.2 |2025-03-04 |CRAN (R 4.4.1) | |parameters |0.24.2 |2025-03-04 |CRAN (R 4.4.1) |
|patchwork |1.3.0 |2024-09-16 |CRAN (R 4.4.1) | |patchwork |1.3.0 |2024-09-16 |CRAN (R 4.4.1) |
|pbmcapply |1.5.1 |2022-04-28 |CRAN (R 4.4.1) |
|performance |0.13.0 |2025-01-15 |CRAN (R 4.4.1) | |performance |0.13.0 |2025-01-15 |CRAN (R 4.4.1) |
|phosphoricons |0.2.1 |2024-04-08 |CRAN (R 4.4.0) | |phosphoricons |0.2.1 |2024-04-08 |CRAN (R 4.4.0) |
|pillar |1.10.2 |2025-04-05 |CRAN (R 4.4.1) | |pillar |1.10.2 |2025-04-05 |CRAN (R 4.4.1) |
|pkgbuild |1.4.7 |2025-03-24 |CRAN (R 4.4.1) | |pkgbuild |1.4.7 |2025-03-24 |CRAN (R 4.4.1) |
|pkgconfig |2.0.3 |2019-09-22 |CRAN (R 4.4.1) | |pkgconfig |2.0.3 |2019-09-22 |CRAN (R 4.4.1) |
|pkgdown |2.1.2 |2025-04-28 |CRAN (R 4.4.1) |
|pkgload |1.4.0 |2024-06-28 |CRAN (R 4.4.0) | |pkgload |1.4.0 |2024-06-28 |CRAN (R 4.4.0) |
|pracma |2.4.4 |2023-11-10 |CRAN (R 4.4.1) |
|processx |3.8.6 |2025-02-21 |CRAN (R 4.4.1) | |processx |3.8.6 |2025-02-21 |CRAN (R 4.4.1) |
|profvis |0.4.0 |2024-09-20 |CRAN (R 4.4.1) | |profvis |0.4.0 |2024-09-20 |CRAN (R 4.4.1) |
|promises |1.3.2 |2024-11-28 |CRAN (R 4.4.1) | |promises |1.3.2 |2024-11-28 |CRAN (R 4.4.1) |
|proxy |0.4-27 |2022-06-09 |CRAN (R 4.4.1) | |proxy |0.4-27 |2022-06-09 |CRAN (R 4.4.1) |
|ps |1.9.1 |2025-04-12 |CRAN (R 4.4.1) | |ps |1.9.1 |2025-04-12 |CRAN (R 4.4.1) |
|purrr |1.0.4 |2025-02-05 |CRAN (R 4.4.1) | |purrr |1.0.4 |2025-02-05 |CRAN (R 4.4.1) |
|qqconf |1.3.2 |2023-04-14 |CRAN (R 4.4.0) |
|qqplotr |0.0.6 |2023-01-25 |CRAN (R 4.4.0) |
|quarto |1.4.4 |2024-07-20 |CRAN (R 4.4.0) | |quarto |1.4.4 |2024-07-20 |CRAN (R 4.4.0) |
|R.cache |0.16.0 |2022-07-21 |CRAN (R 4.4.0) |
|R.methodsS3 |1.8.2 |2022-06-13 |CRAN (R 4.4.1) |
|R.oo |1.27.0 |2024-11-01 |CRAN (R 4.4.1) |
|R.utils |2.13.0 |2025-02-24 |CRAN (R 4.4.1) |
|R6 |2.6.1 |2025-02-15 |CRAN (R 4.4.1) | |R6 |2.6.1 |2025-02-15 |CRAN (R 4.4.1) |
|ragg |1.4.0 |2025-04-10 |CRAN (R 4.4.1) |
|rbibutils |2.3 |2024-10-04 |CRAN (R 4.4.1) | |rbibutils |2.3 |2024-10-04 |CRAN (R 4.4.1) |
|RColorBrewer |1.1-3 |2022-04-03 |CRAN (R 4.4.1) | |RColorBrewer |1.1-3 |2022-04-03 |CRAN (R 4.4.1) |
|Rcpp |1.0.14 |2025-01-12 |CRAN (R 4.4.1) | |Rcpp |1.0.14 |2025-01-12 |CRAN (R 4.4.1) |
@ -149,17 +121,13 @@
|readODS |2.3.2 |2025-01-13 |CRAN (R 4.4.1) | |readODS |2.3.2 |2025-01-13 |CRAN (R 4.4.1) |
|readr |2.1.5 |2024-01-10 |CRAN (R 4.4.0) | |readr |2.1.5 |2024-01-10 |CRAN (R 4.4.0) |
|readxl |1.4.5 |2025-03-07 |CRAN (R 4.4.1) | |readxl |1.4.5 |2025-03-07 |CRAN (R 4.4.1) |
|REDCapCAST |25.3.2 |2025-03-10 |CRAN (R 4.4.1) |
|REDCapR |1.4.0 |2025-01-11 |CRAN (R 4.4.1) |
|reformulas |0.4.0 |2024-11-03 |CRAN (R 4.4.1) | |reformulas |0.4.0 |2024-11-03 |CRAN (R 4.4.1) |
|remotes |2.5.0 |2024-03-17 |CRAN (R 4.4.1) | |remotes |2.5.0 |2024-03-17 |CRAN (R 4.4.1) |
|rempsyc |0.1.9 |2025-02-01 |CRAN (R 4.4.1) |
|renv |1.1.4 |2025-03-20 |CRAN (R 4.4.1) | |renv |1.1.4 |2025-03-20 |CRAN (R 4.4.1) |
|report |0.6.1 |2025-02-07 |CRAN (R 4.4.1) | |report |0.6.1 |2025-02-07 |CRAN (R 4.4.1) |
|rio |1.2.3 |2024-09-25 |CRAN (R 4.4.1) | |rio |1.2.3 |2024-09-25 |CRAN (R 4.4.1) |
|rlang |1.1.6 |2025-04-11 |CRAN (R 4.4.1) | |rlang |1.1.6 |2025-04-11 |CRAN (R 4.4.1) |
|rmarkdown |2.29 |2024-11-04 |CRAN (R 4.4.1) | |rmarkdown |2.29 |2024-11-04 |CRAN (R 4.4.1) |
|robustbase |0.99-4-1 |2024-09-27 |CRAN (R 4.4.1) |
|rprojroot |2.0.4 |2023-11-05 |CRAN (R 4.4.1) | |rprojroot |2.0.4 |2023-11-05 |CRAN (R 4.4.1) |
|rsconnect |1.3.4 |2025-01-22 |CRAN (R 4.4.1) | |rsconnect |1.3.4 |2025-01-22 |CRAN (R 4.4.1) |
|rstudioapi |0.17.1 |2024-10-22 |CRAN (R 4.4.1) | |rstudioapi |0.17.1 |2024-10-22 |CRAN (R 4.4.1) |
@ -171,16 +139,10 @@
|shinybusy |0.3.3 |2024-03-09 |CRAN (R 4.4.0) | |shinybusy |0.3.3 |2024-03-09 |CRAN (R 4.4.0) |
|shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) | |shinyTime |1.0.3 |2022-08-19 |CRAN (R 4.4.0) |
|shinyWidgets |0.9.0 |2025-02-21 |CRAN (R 4.4.1) | |shinyWidgets |0.9.0 |2025-02-21 |CRAN (R 4.4.1) |
|stringi |1.8.7 |2025-03-27 |CRAN (R 4.4.1) |
|stringr |1.5.1 |2023-11-14 |CRAN (R 4.4.0) |
|styler |1.10.3 |2024-04-07 |CRAN (R 4.4.0) |
|systemfonts |1.2.2 |2025-04-04 |CRAN (R 4.4.1) |
|textshaping |1.0.0 |2025-01-20 |CRAN (R 4.4.1) |
|tibble |3.2.1 |2023-03-20 |CRAN (R 4.4.0) | |tibble |3.2.1 |2023-03-20 |CRAN (R 4.4.0) |
|tidyr |1.3.1 |2024-01-24 |CRAN (R 4.4.1) | |tidyr |1.3.1 |2024-01-24 |CRAN (R 4.4.1) |
|tidyselect |1.2.1 |2024-03-11 |CRAN (R 4.4.0) | |tidyselect |1.2.1 |2024-03-11 |CRAN (R 4.4.0) |
|toastui |0.4.0 |2025-04-03 |CRAN (R 4.4.1) | |toastui |0.4.0 |2025-04-03 |CRAN (R 4.4.1) |
|twosamples |2.0.1 |2023-06-23 |CRAN (R 4.4.1) |
|tzdb |0.5.0 |2025-03-15 |CRAN (R 4.4.1) | |tzdb |0.5.0 |2025-03-15 |CRAN (R 4.4.1) |
|urlchecker |1.0.1 |2021-11-30 |CRAN (R 4.4.1) | |urlchecker |1.0.1 |2021-11-30 |CRAN (R 4.4.1) |
|usethis |3.1.0 |2024-11-26 |CRAN (R 4.4.1) | |usethis |3.1.0 |2024-11-26 |CRAN (R 4.4.1) |
@ -193,4 +155,3 @@
|xml2 |1.3.8 |2025-03-14 |CRAN (R 4.4.1) | |xml2 |1.3.8 |2025-03-14 |CRAN (R 4.4.1) |
|xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) | |xtable |1.8-4 |2019-04-21 |CRAN (R 4.4.1) |
|yaml |2.3.10 |2024-07-26 |CRAN (R 4.4.1) | |yaml |2.3.10 |2024-07-26 |CRAN (R 4.4.1) |
|zip |2.3.2 |2025-02-01 |CRAN (R 4.4.1) |