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Andreas Gammelgaard Damsbo 2025-04-15 08:55:35 +02:00
commit e463fa0670
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11 changed files with 365 additions and 133 deletions
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26
R/baseline_table.R
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@ -12,9 +12,6 @@
#' mtcars |> baseline_table()
#' mtcars |> baseline_table(fun.args = list(by = "gear"))
baseline_table <- function(data, fun.args = NULL, fun = gtsummary::tbl_summary, vars = NULL) {
if (!is.null(vars)) {
data <- data |> dplyr::select(dplyr::all_of(vars))
}
out <- do.call(fun, c(list(data = data), fun.args))
return(out)
@ -35,7 +32,8 @@ baseline_table <- function(data, fun.args = NULL, fun = gtsummary::tbl_summary,
#'
#' @examples
#' mtcars |> create_baseline(by.var = "gear", add.p = "yes" == "yes")
create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALSE, theme=c("jama", "lancet", "nejm", "qjecon")) {
#' create_baseline(default_parsing(mtcars), by.var = "am", add.p = FALSE, add.overall = FALSE, theme = "lancet")
create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALSE, theme = c("jama", "lancet", "nejm", "qjecon")) {
theme <- match.arg(theme)
if (by.var == "none" | !by.var %in% names(data)) {
@ -53,14 +51,18 @@ create_baseline <- function(data, ..., by.var, add.p = FALSE, add.overall = FALS
gtsummary::theme_gtsummary_journal(journal = theme)
out <- data |>
baseline_table(
fun.args =
list(
by = by.var,
...
)
)
args <- list(...)
parameters <- list(
data = data,
fun.args = list(by = by.var, ...)
)
out <- do.call(
baseline_table,
parameters
)
if (!is.null(by.var)) {
if (isTRUE(add.overall)) {