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new working version with major updates
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inst/apps/data_analysis_modules/www/docs.html
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<!DOCTYPE html>
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
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<meta charset="utf-8">
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<meta name="generator" content="quarto-1.5.57">
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<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
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<title>freesearcheR platform documentation</title>
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<style>
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code{white-space: pre-wrap;}
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span.smallcaps{font-variant: small-caps;}
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div.columns{display: flex; gap: min(4vw, 1.5em);}
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div.column{flex: auto; overflow-x: auto;}
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div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
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ul.task-list{list-style: none;}
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ul.task-list li input[type="checkbox"] {
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width: 0.8em;
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margin: 0 0.8em 0.2em -1em; vertical-align: middle;
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}
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.display.math{display: block; text-align: center; margin: 0.5rem auto;}
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</style>
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</head>
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<body>
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<header id="title-block-header">
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<h1 class="title"><strong><em>freesearcheR</em></strong> platform documentation</h1>
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</header>
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<h1 id="welcome">Welcome!</h1>
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<p>So glad to see you here! Welcome to test this early concept of a platform to easily explore, manipulate and analyse clinical data.</p>
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<p>Below will be a more detailed description of the included features and possibilities, as well as the planned and possible feature additions.</p>
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<h2 id="contribute">Contribute</h2>
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<p>Contributions are very welcome. If you find anything odd, or you think of features to add or remove, please <a href="https://github.com/agdamsbo/webResearch/issues">share and report on the project page on GitHub</a>.</p>
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<h2 id="roadmap">Roadmap</h2>
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<ul>
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<li><p><label><input type="checkbox">Stratified analyses</label></p></li>
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<li><p>Additional study designs:</p>
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<ul class="task-list">
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<li><p><label><input type="checkbox" checked>Cross-sectional data analyses</label></p></li>
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<li><p><label><input type="checkbox">Longitudinal data analyses</label></p></li>
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<li><p><label><input type="checkbox">Survival analysis</label></p></li>
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</ul></li>
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<li><p>More detailed variable browser</p>
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<ul class="task-list">
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<li><p><label><input type="checkbox">Add histograms for data distribution</label></p></li>
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<li><p><label><input type="checkbox">Option to edit variable labels for nicer tables</label></p></li>
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</ul></li>
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<li><p><label><input type="checkbox">Plot regression analyses results</label></p></li>
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<li><p><label><input type="checkbox">Export modified data</label></p></li>
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<li><p><label><input type="checkbox">Include reproducible code for all steps</label></p></li>
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<li><p><label><input type="checkbox">Modify factor levels (including naming, order, collapsing, removing)</label></p></li>
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<li><p><label><input type="checkbox">More options for date/datetime/time grouping/factoring</label></p></li>
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</ul>
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</body></html>
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inst/apps/data_analysis_modules/www/docs.md
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inst/apps/data_analysis_modules/www/docs.md
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# Documentation on the freesearcheR platform
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Welcome! So glad to see you here! Welcome to test this early concept of a platform to easily explore, manipulate and analyse clinical data.
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Below will be a more detailed description of the included features and possibilities, as well as the planned and possible feature additions.
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## Roadmap
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- [ ] Stratified analyses
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- Additional study designs:
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- [x] Cross-sectional data analyses
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- [ ] Longitudinal data analyses
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- [ ] Survival analysis
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- More detailed variable browser
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- [ ] Add histograms for datadistribution
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- [ ] Option to edit labels
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- [ ] Plot regression analyses results
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- [ ] Export modified data
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- [ ] Include reproducible code for all steps
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- [ ] Modify factor levels
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- [ ] More options for date/datetime/time grouping/factoring
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45
inst/apps/data_analysis_modules/www/docs.qmd
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inst/apps/data_analysis_modules/www/docs.qmd
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---
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title: "***freesearcheR*** platform documentation"
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format:
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html:
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self-contained: true
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minimal: true
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---
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# Welcome!
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So glad to see you here! Welcome to test this early concept of a platform to easily explore, manipulate and analyse clinical data.
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Below will be a more detailed description of the included features and possibilities, as well as the planned and possible feature additions.
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## Contribute
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Contributions are very welcome. If you find anything odd, or you think of features to add or remove, please [share and report on the project page on GitHub](https://github.com/agdamsbo/webResearch/issues).
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## Roadmap
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- [ ] Stratified analyses
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- Additional study designs:
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- [x] Cross-sectional data analyses
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- [ ] Longitudinal data analyses
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- [ ] Survival analysis
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- More detailed variable browser
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- [ ] Add histograms for data distribution
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- [ ] Option to edit variable labels for nicer tables
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- [ ] Plot regression analyses results
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- [ ] Export modified data
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- [ ] Include reproducible code for all steps
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- [ ] Modify factor levels (including naming, order, collapsing, removing)
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- [ ] More options for date/datetime/time grouping/factoring
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@ -1,3 +1,21 @@
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# Intro to webResearch/freesearcheR/VOICE
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# Welcome
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This is just placeholder text.
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This is the ***freesearchR*** web data analysis tool. The ***freesearchR*** is an opinioated tool for easy data evaluation and analysis at the hands of the clinician. We intend it to be a powerful to, that is easy and secure to use.
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By intention, this tool has been designed to be simple to use with a minimum of mandatory options to keep the workflow streamlined, while also including a few options to go even further.
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There are four simple steps to go through:
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1. Import data (this can be a spreadsheet on your machine or direct export from a REDCap server)
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2. A *optional* step of data modification (change variable classes and creating categorical variables (factors) from numeric or time data)
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3. Data analysis of cross-sectionally designed studies
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- Classic baseline charactieristics (options to stratify and compare variables)
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- Linear, dichotomous or ordinal logistic regression will be used depending on specified outcome variable
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- Evaluation of model assumptions
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4. Export the the analyses results as .docx or .odt.
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