diff --git a/404.html b/404.html
index 8a70c0d..f289b71 100644
--- a/404.html
+++ b/404.html
@@ -5,7 +5,7 @@
 <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-<title>Page not found (404) • freesearcheR</title>
+<title>Page not found (404) • FreesearchR</title>
 <script src="https://agdamsbo.github.io/freesearcheR/deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
 <link href="https://agdamsbo.github.io/freesearcheR/deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
 <script src="https://agdamsbo.github.io/freesearcheR/deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="https://agdamsbo.github.io/freesearcheR/deps/Montserrat-0.4.9/font.css" rel="stylesheet">
@@ -21,7 +21,7 @@
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="https://agdamsbo.github.io/freesearcheR/index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="https://agdamsbo.github.io/freesearcheR/index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -32,7 +32,7 @@
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
       <ul class="navbar-nav me-auto">
-<li class="nav-item"><a class="nav-link" href="https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html">Get started</a></li>
+<li class="nav-item"><a class="nav-link" href="https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="https://agdamsbo.github.io/freesearcheR/reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="https://agdamsbo.github.io/freesearcheR/ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="https://agdamsbo.github.io/freesearcheR/QA.html">Q&amp;A</a></li>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 08e9b9f..3dc1000 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contributor Covenant Code of Conduct • freesearcheR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Contributor Covenant Code of Conduct"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contributor Covenant Code of Conduct • FreesearchR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Contributor Covenant Code of Conduct"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="QA.html">Q&amp;A</a></li>
diff --git a/LICENSE.html b/LICENSE.html
index 118f066..2ef6ff5 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GNU Affero General Public License • freesearcheR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="GNU Affero General Public License"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GNU Affero General Public License • FreesearchR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="GNU Affero General Public License"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="QA.html">Q&amp;A</a></li>
diff --git a/QA.html b/QA.html
index 1032c8f..88ffe60 100644
--- a/QA.html
+++ b/QA.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Questions and answers • freesearcheR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Questions and answers"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Questions and answers • FreesearchR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Questions and answers"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="ROADMAP.html">Roadmap</a></li>
 <li class="active nav-item"><a class="nav-link" href="QA.html">Q&amp;A</a></li>
@@ -37,7 +37,7 @@
 
 <div id="questions-and-answers" class="section level1">
 
-<p>A complete instructions set is not available, but below are a collection of questions and answers about the project and use of the app.</p>
+<p>A complete instructions set <a href="https://agdamsbo.github.io/FreesearchR/articles/FreesearchR.html" class="external-link">is also available</a>, but below are a collection of questions and answers about the project and use of the <strong><em>FreesearchR</em></strong> app.</p>
 <div class="section level2">
 <h2 id="are-you-keeping-the-uploaded-data">Are you keeping the uploaded data?<a class="anchor" aria-label="anchor" href="#are-you-keeping-the-uploaded-data"></a></h2>
 <p>No! All uploaded data is deleted when the session ends, so only stored for your analyses and the immediately deleted.</p>
diff --git a/ROADMAP.html b/ROADMAP.html
index f7f540d..e36fde6 100644
--- a/ROADMAP.html
+++ b/ROADMAP.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Project roadmap • freesearcheR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Project roadmap"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Project roadmap • FreesearchR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Project roadmap"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="active nav-item"><a class="nav-link" href="ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="QA.html">Q&amp;A</a></li>
diff --git a/articles/FreesearchR.html b/articles/FreesearchR.html
new file mode 100644
index 0000000..92aa442
--- /dev/null
+++ b/articles/FreesearchR.html
@@ -0,0 +1,182 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
+<head>
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<meta charset="utf-8">
+<meta http-equiv="X-UA-Compatible" content="IE=edge">
+<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<title>FreesearchR • FreesearchR</title>
+<script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
+<link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
+<script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet">
+<link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet">
+<link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
+<link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet">
+<script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet">
+<meta property="og:title" content="FreesearchR">
+</head>
+<body>
+    <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
+
+
+    <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
+
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
+
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
+
+
+    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>
+
+    <div id="navbar" class="collapse navbar-collapse ms-3">
+      <ul class="navbar-nav me-auto">
+<li class="active nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
+<li class="nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
+<li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
+<li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
+<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
+      </ul>
+<ul class="navbar-nav">
+<li class="nav-item"><form class="form-inline" role="search">
+ <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json">
+</form></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+      </ul>
+</div>
+
+
+  </div>
+</nav><div class="container template-article">
+
+
+
+
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+
+      <h1>FreesearchR</h1>
+            
+      
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/vignettes/FreesearchR.Rmd" class="external-link"><code>vignettes/FreesearchR.Rmd</code></a></small>
+      <div class="d-none name"><code>FreesearchR.Rmd</code></div>
+    </div>
+
+    
+    
+<div class="section level2">
+<h2 id="getting-started-with-freesearchr">Getting started with <strong><em>FreesearchR</em></strong><a class="anchor" aria-label="anchor" href="#getting-started-with-freesearchr"></a>
+</h2>
+<p>Below is a simple walk-trough and basic instructions for the
+functions on the FreesearchR app.</p>
+<div class="section level3">
+<h3 id="launching">Launching<a class="anchor" aria-label="anchor" href="#launching"></a>
+</h3>
+<p>The easiest way to get started is to launch <a href="https://agdamsbo.shinyapps.io/freesearcheR/" class="external-link">the hosted version of
+the app on shinyapps.io (click this link)</a>.</p>
+<p>Additionally you have the option to run the app locally with access
+to any data in your current working environment.</p>
+<p>To do this, open <em>R</em> (or RStudio or similar), and run the
+following code to install the latest version of
+<strong><em>FreesearchR</em></strong> and launch the app:</p>
+<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://pak.r-lib.org/" class="external-link">"pak"</a></span><span class="op">)</span></span>
+<span><span class="fu">pak</span><span class="fu">::</span><span class="fu"><a href="https://pak.r-lib.org/reference/pak.html" class="external-link">pak</a></span><span class="op">(</span><span class="st">"agdamsbo/FreesearchR"</span><span class="op">)</span></span>
+<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/freesearcheR" class="external-link">FreesearchR</a></span><span class="op">)</span></span>
+<span><span class="fu">FreesearchR</span><span class="fu">::</span><span class="fu"><a href="../reference/launch_FreesearchR.html">launch_FreesearchR</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
+<p>As a small note, a standalone Windows app version is on the drawing
+board as well, but no time frame is available.</p>
+</div>
+<div class="section level3">
+<h3 id="importing-data">Importing data<a class="anchor" aria-label="anchor" href="#importing-data"></a>
+</h3>
+<p>Once in the app and in the “<em>Import</em>”, you have three options
+available for importing data: file upload, REDCap server export and
+local or sample data.</p>
+<p>After choosing a data source, you can set a threshold to filter data
+be completenes and further manually specify variables to include for
+analyses.</p>
+<div class="section level4">
+<h4 id="file-upload">File upload<a class="anchor" aria-label="anchor" href="#file-upload"></a>
+</h4>
+<p>Currently several data file formats are supported for easy import
+(csv, txt, xls(x), ods, rds, dta). If importing workbooks (xls(x) or
+ods), you are prompted to specify sheet(s) to import. If choosing
+multiple sheets, these are automatically merged by common variable(s),
+so please make sure that key variables are correctly named
+identically.</p>
+</div>
+<div class="section level4">
+<h4 id="redcap-server-export">REDCap server export<a class="anchor" aria-label="anchor" href="#redcap-server-export"></a>
+</h4>
+</div>
+<div class="section level4">
+<h4 id="local-or-sample-data">Local or sample data<a class="anchor" aria-label="anchor" href="#local-or-sample-data"></a>
+</h4>
+</div>
+</div>
+<div class="section level3">
+<h3 id="evaluate">Evaluate<a class="anchor" aria-label="anchor" href="#evaluate"></a>
+</h3>
+<div class="section level4">
+<h4 id="baseline">Baseline<a class="anchor" aria-label="anchor" href="#baseline"></a>
+</h4>
+</div>
+<div class="section level4">
+<h4 id="correlation-matrix">Correlation matrix<a class="anchor" aria-label="anchor" href="#correlation-matrix"></a>
+</h4>
+</div>
+</div>
+<div class="section level3">
+<h3 id="visualise">Visualise<a class="anchor" aria-label="anchor" href="#visualise"></a>
+</h3>
+<ul>
+<li>Would be nice to have a table of possible plots, their description
+and data options</li>
+</ul>
+</div>
+<div class="section level3">
+<h3 id="regression">Regression<a class="anchor" aria-label="anchor" href="#regression"></a>
+</h3>
+</div>
+<div class="section level3">
+<h3 id="download">Download<a class="anchor" aria-label="anchor" href="#download"></a>
+</h3>
+<div class="section level4">
+<h4 id="report">Report<a class="anchor" aria-label="anchor" href="#report"></a>
+</h4>
+</div>
+<div class="section level4">
+<h4 id="data">Data<a class="anchor" aria-label="anchor" href="#data"></a>
+</h4>
+</div>
+<div class="section level4">
+<h4 id="code">Code<a class="anchor" aria-label="anchor" href="#code"></a>
+</h4>
+</div>
+</div>
+</div>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
+    </nav></aside>
+</div>
+
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p>Developed by Andreas Gammelgaard Damsbo. Provided without <strong>any warranty</strong>.</p>
+</div>
+
+    </footer>
+</div>
+
+
+
+
+
+  </body>
+</html>
diff --git a/articles/index.html b/articles/index.html
index 9c2dc90..bc611b4 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Articles • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Articles"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Articles • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Articles"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@@ -38,7 +38,7 @@
       <h3>All vignettes</h3>
       <div class="section-desc"></div>
 
-      <dl><dt><a href="freesearcheR.html">freesearcheR</a></dt>
+      <dl><dt><a href="FreesearchR.html">FreesearchR</a></dt>
         <dd>
       </dd></dl></div>
   </main></div>
diff --git a/authors.html b/authors.html
index 41fe93a..be4e40e 100644
--- a/authors.html
+++ b/authors.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Authors and Citation • freesearcheR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Authors and Citation"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Authors and Citation • FreesearchR</title><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><link href="extra.css" rel="stylesheet"><meta property="og:title" content="Authors and Citation"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="QA.html">Q&amp;A</a></li>
@@ -48,11 +48,11 @@
       <p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
 
       <p>Damsbo A (2025).
-<em>freesearcheR: Browser Based Data Analysis</em>.
+<em>FreesearchR: Browser Based Data Analysis</em>.
 R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/, <a href="https://github.com/agdamsbo/freesearcheR" class="external-link">https://github.com/agdamsbo/freesearcheR</a>.
 </p>
       <pre>@Manual{,
-  title = {freesearcheR: Browser Based Data Analysis},
+  title = {FreesearchR: Browser Based Data Analysis},
   author = {Andreas Gammelgaard Damsbo},
   year = {2025},
   note = {R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/},
diff --git a/index.html b/index.html
index 4833056..9664592 100644
--- a/index.html
+++ b/index.html
@@ -5,7 +5,7 @@
 <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
-<title>Browser Based Data Analysis • freesearcheR</title>
+<title>Browser Based Data Analysis • FreesearchR</title>
 <script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
 <link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet">
 <script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/Montserrat-0.4.9/font.css" rel="stylesheet">
@@ -23,7 +23,7 @@
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -34,7 +34,7 @@
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
       <ul class="navbar-nav me-auto">
-<li class="nav-item"><a class="nav-link" href="articles/freesearcheR.html">Get started</a></li>
+<li class="nav-item"><a class="nav-link" href="articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="QA.html">Q&amp;A</a></li>
@@ -53,30 +53,30 @@
 </nav><div class="container template-home">
 <div class="row">
   <main id="main" class="col-md-9"><div class="section level1">
-<div class="page-header"><h1 id="freesearcher">freesearcheR<a class="anchor" aria-label="anchor" href="#freesearcher"></a>
+<div class="page-header"><h1 id="freesearchr">FreesearchR<a class="anchor" aria-label="anchor" href="#freesearchr"></a>
 </h1></div>
 <!-- badges: start -->
 
-<p>This package is the backbone of the <strong><em>freesearcheR</em></strong>, a free and open-source browser based data exploration and analysis tool for clinicians and researchers with publication ready output.</p>
-<p>This package and the <strong><em>freesearcheR</em></strong>-tool is part of a larger initiative to democratize health data analysis and remove barriers for clinicians to engage in health research.</p>
-<p>the <strong><em>freesearcheR</em></strong>-tool is online and accessible here: <a href="https://agdamsbo.shinyapps.io/freesearcheR/" class="external-link">link to the app freely hosted on shinyapps.io</a>. All feedback is welcome and can be shared as a GitHub issue.</p>
+<p>This package is the backbone of the <strong><em>FreesearchR</em></strong>, a free and open-source browser based data exploration and analysis tool for clinicians and researchers with publication ready output.</p>
+<p>This package and the <strong><em>FreesearchR</em></strong>-tool is part of a larger initiative to democratize health data analysis and remove barriers for clinicians to engage in health research.</p>
+<p>the <strong><em>FreesearchR</em></strong>-tool is online and accessible here: <a href="https://agdamsbo.shinyapps.io/FreesearchR/" class="external-link">link to the app freely hosted on shinyapps.io</a>. All feedback is welcome and can be shared as a GitHub issue.</p>
 <p>Initiatives for funding continued development of the tool and surrounding initiatives is ongoing.</p>
 <div class="section level2">
 <h2 id="install-locally">Install locally<a class="anchor" aria-label="anchor" href="#install-locally"></a>
 </h2>
-<p>The <strong><em>freesearcheR</em></strong>-tool can also be launched locally. Any data.frame available in the global environment will be accessible from the interface.</p>
+<p>The <strong><em>FreesearchR</em></strong>-tool can also be launched locally. Any data.frame available in the global environment will be accessible from the interface.</p>
 <pre><code><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://devtools.r-lib.org/" class="external-link">"devtools"</a></span><span class="op">)</span></span>
-<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">"agdamsbo/freesearcheR"</span><span class="op">)</span></span>
-<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/freesearcheR" class="external-link">freesearcheR</a></span><span class="op">)</span></span>
+<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">"agdamsbo/FreesearchR"</span><span class="op">)</span></span>
+<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/freesearcheR" class="external-link">FreesearchR</a></span><span class="op">)</span></span>
 <span><span class="co"># By loading mtcars to the environment, it will be available</span></span>
 <span><span class="co"># in the interface like any other data.frame</span></span>
 <span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">mtcars</span><span class="op">)</span></span>
-<span><span class="fu"><a href="reference/shiny_freesearcheR.html">shiny_freesearcheR</a></span><span class="op">(</span><span class="op">)</span></span></code></pre>
+<span><span class="fu"><a href="reference/launch_FreesearchR.html">launch_FreesearchR</a></span><span class="op">(</span><span class="op">)</span></span></code></pre>
 </div>
 <div class="section level2">
 <h2 id="code-of-conduct">Code of Conduct<a class="anchor" aria-label="anchor" href="#code-of-conduct"></a>
 </h2>
-<p>Please note that the freesearcheR project is released with a <a href="https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html" class="external-link">Contributor Code of Conduct</a>. By contributing to this project, you agree to abide by its terms.</p>
+<p>Please note that the <strong><em>FreesearchR</em></strong> project is released with a <a href="https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html" class="external-link">Contributor Code of Conduct</a>. By contributing to this project, you agree to abide by its terms.</p>
 </div>
 </div>
   </main><aside class="col-md-3"><div class="links">
@@ -105,7 +105,7 @@
 <div class="citation">
 <h2 data-toc-skip>Citation</h2>
 <ul class="list-unstyled">
-<li><a href="authors.html#citation">Citing freesearcheR</a></li>
+<li><a href="authors.html#citation">Citing FreesearchR</a></li>
 </ul>
 </div>
 
@@ -120,9 +120,9 @@
 <h2 data-toc-skip>Dev status</h2>
 <ul class="list-unstyled">
 <li><a href="https://lifecycle.r-lib.org/articles/stages.html#experimental" class="external-link"><img src="https://img.shields.io/badge/lifecycle-experimental-orange.svg" alt="Lifecycle: experimental"></a></li>
-<li><a href="https://github.com/agdamsbo/freesearcheR/actions/workflows/rhub.yaml" class="external-link"><img src="https://github.com/agdamsbo/freesearcheR/actions/workflows/rhub.yaml/badge.svg" alt="rhub"></a></li>
 <li><a href="https://doi.org/10.5281/zenodo.14527429" class="external-link"><img src="https://zenodo.org/badge/DOI/10.5281/zenodo.14527429.svg" alt="DOI"></a></li>
-<li><a href="https://agdamsbo.shinyapps.io/freesearcheR/" class="external-link"><img src="https://img.shields.io/badge/Shiny-shinyapps.io-blue?style=flat&amp;labelColor=white&amp;logo=RStudio&amp;logoColor=blue" alt="freesearcheR"></a></li>
+<li><a href="https://github.com/agdamsbo/FreesearchR/actions/workflows/rhub.yaml" class="external-link"><img src="https://github.com/agdamsbo/FreesearchR/actions/workflows/rhub.yaml/badge.svg" alt="rhub"></a></li>
+<li><a href="https://agdamsbo.shinyapps.io/freesearcheR/" class="external-link"><img src="https://img.shields.io/badge/Shiny-shinyapps.io-blue?style=flat&amp;labelColor=white&amp;logo=RStudio&amp;logoColor=blue" alt="FreesearchR"></a></li>
 </ul>
 </div>
 
diff --git a/news/index.html b/news/index.html
index 9291ca0..a74b1b5 100644
--- a/news/index.html
+++ b/news/index.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Changelog • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Changelog"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Changelog • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Changelog"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@@ -35,46 +35,7 @@
       <small>Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
-    <div class="section level2">
-<h2 class="pkg-version" data-toc-text="25.3.2" id="freesearcher-2532">freesearcheR 25.3.2<a class="anchor" aria-label="anchor" href="#freesearcher-2532"></a></h2>
-<p>Focus is on polish and improved ui/ux.</p>
-<p>First steps towards an updated name (will be FreesearchR), with renamed repository. Also, the repo will move to an organisation (named FreesearchR).</p>
-<p>Testing file upload conducted and improved.</p>
-<p>Working on omproving code export.</p>
-</div>
-    <div class="section level2">
-<h2 class="pkg-version" data-toc-text="25.3.1" id="freesearcher-2531">freesearcheR 25.3.1<a class="anchor" aria-label="anchor" href="#freesearcher-2531"></a></h2>
-<p>First steps towards a more focused and simplified interface.</p>
-<p>Focus will be on ease of use, handling basic functionality for data inspection and descriptive analyses.</p>
-<p>Inspired by the Stroke Center implementation guidelines of the WSO, we will apply a similar approach to this project in order to keep the interface simple and robust. Basic functions for descriptive analyses and data browsing are the basics. More advanced features like regression analyses are added for learning purposes, but really should be done by one self in software like <em>R</em> to ensure learning and reproducibility.</p>
-<p>Teal dependencies removed. The teal framework really seems very powerful and promising, but it will also mean less control and more clutter. May come up again later.</p>
-<p>All main components have been implemented:</p>
-<ul><li><p>Data import from different sources</p></li>
-<li><p>Data management (variable creation, re-classing, naming, labelling and more)</p></li>
-<li><p>Basic data comparisons and descriptive analyses</p></li>
-<li><p>Basic data visualisations with a select set of plot types great for publication purposes</p></li>
-<li><p>Regression analysis of basic clinical cross-sectional data (mixed models of repeated measures and survival analyses is on the table)</p></li>
-<li><p>Export of outputs (descriptive analyses and regression) as well as modified dataset (code is also showed, but not working as it should)</p></li>
-</ul><p>Next steps are:</p>
-<ul><li><p>Polished code export</p></li>
-<li><p>Improved workflow and descriptive text as well as thorough step-wise guide/documentation (possibly with small videos)</p></li>
-<li><p>Implement in clinical projects</p></li>
-<li><p>Implement in data analysis courses</p></li>
-<li><p>Extensive testing and bug squashing</p></li>
-</ul></div>
-    <div class="section level2">
-<h2 class="pkg-version" data-toc-text="25.1.1" id="freesearcher-2511">freesearcheR 25.1.1<a class="anchor" aria-label="anchor" href="#freesearcher-2511"></a></h2>
-<ul><li><p>UI tweaks.</p></li>
-<li><p>NEW: Option to set class as <code>hms</code> using the <a href="https://hms.tidyverse.org/" class="external-link">hms</a> package.</p></li>
-<li><p>NEW: summary grid with sparklines.</p></li>
-<li><p>Speed improvements and better regression analysis handling. Preparations for extending analysis options and study designs.</p></li>
-</ul></div>
-    <div class="section level2">
-<h2 class="pkg-version" data-toc-text="24.12.1" id="freesearcher-24121">freesearcheR 24.12.1<a class="anchor" aria-label="anchor" href="#freesearcher-24121"></a></h2>
-<ul><li>Initial release for Zenodo.</li>
-</ul></div>
-  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
-    </nav></aside></div>
+  </main></div>
 
 
     <footer><div class="pkgdown-footer-left">
diff --git a/pkgdown.yml b/pkgdown.yml
index b10ee03..1b84d6c 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,8 +2,8 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles:
-  freesearcheR: freesearcheR.html
-last_built: 2025-03-18T07:45Z
+  FreesearchR: FreesearchR.html
+last_built: 2025-03-19T08:31Z
 urls:
   reference: https://agdamsbo.github.io/freesearcheR/reference
   article: https://agdamsbo.github.io/freesearcheR/articles
diff --git a/reference/add_class_icon.html b/reference/add_class_icon.html
index 7274fcd..24f461f 100644
--- a/reference/add_class_icon.html
+++ b/reference/add_class_icon.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert class grid column to icon — add_class_icon • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Convert class grid column to icon — add_class_icon"><meta name="description" content="Convert class grid column to icon"><meta property="og:description" content="Convert class grid column to icon"><!-- dependencies from examples --><script src="libs/htmlwidgets-1.6.4/htmlwidgets.js"></script><script src="libs/datagrid-binding-0.3.4/datagrid.js"></script><link href="libs/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="libs/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert class grid column to icon — add_class_icon • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Convert class grid column to icon — add_class_icon"><meta name="description" content="Convert class grid column to icon"><meta property="og:description" content="Convert class grid column to icon"><!-- dependencies from examples --><script src="libs/htmlwidgets-1.6.4/htmlwidgets.js"></script><script src="libs/datagrid-binding-0.3.4/datagrid.js"></script><link href="libs/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="libs/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/add_sparkline.html b/reference/add_sparkline.html
index a0e1a8a..55d1665 100644
--- a/reference/add_sparkline.html
+++ b/reference/add_sparkline.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Add sparkline to datagrid — add_sparkline • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Add sparkline to datagrid — add_sparkline"><meta name="description" content="Add sparkline to datagrid"><meta property="og:description" content="Add sparkline to datagrid"><!-- dependencies from examples --><script src="libs/htmlwidgets-1.6.4/htmlwidgets.js"></script><script src="libs/datagrid-binding-0.3.4/datagrid.js"></script><link href="libs/htmltools-fill-0.5.8.1/fill.css" rel="stylesheet"><script src="libs/apexcharter-binding-0.4.4/apexcharter.js"></script></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Add sparkline to datagrid — add_sparkline • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Add sparkline to datagrid — add_sparkline"><meta name="description" content="Add sparkline to datagrid"><meta property="og:description" content="Add sparkline to datagrid"><!-- dependencies from examples --><script src="libs/htmlwidgets-1.6.4/htmlwidgets.js"></script><script src="libs/datagrid-binding-0.3.4/datagrid.js"></script><link href="libs/htmltools-fill-0.5.8.1/fill.css" rel="stylesheet"><script src="libs/apexcharter-binding-0.4.4/apexcharter.js"></script></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/all_but.html b/reference/all_but.html
index 0e2645c..7a47dd6 100644
--- a/reference/all_but.html
+++ b/reference/all_but.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Select all from vector but — all_but • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Select all from vector but — all_but"><meta name="description" content="Select all from vector but"><meta property="og:description" content="Select all from vector but"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Select all from vector but — all_but • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Select all from vector but — all_but"><meta name="description" content="Select all from vector but"><meta property="og:description" content="Select all from vector but"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/append_list.html b/reference/append_list.html
index f416c58..765bf8c 100644
--- a/reference/append_list.html
+++ b/reference/append_list.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Append list with named index — append_list • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Append list with named index — append_list"><meta name="description" content="Append list with named index"><meta property="og:description" content="Append list with named index"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Append list with named index — append_list • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Append list with named index — append_list"><meta name="description" content="Append list with named index"><meta property="og:description" content="Append list with named index"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/argsstring2list.html b/reference/argsstring2list.html
index 2713bfc..e0ba29d 100644
--- a/reference/argsstring2list.html
+++ b/reference/argsstring2list.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert string of arguments to list of arguments — argsstring2list • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Convert string of arguments to list of arguments — argsstring2list"><meta name="description" content="Idea from the answer: https://stackoverflow.com/a/62979238"><meta property="og:description" content="Idea from the answer: https://stackoverflow.com/a/62979238"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert string of arguments to list of arguments — argsstring2list • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Convert string of arguments to list of arguments — argsstring2list"><meta name="description" content="Idea from the answer: https://stackoverflow.com/a/62979238"><meta property="og:description" content="Idea from the answer: https://stackoverflow.com/a/62979238"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/baseline_table.html b/reference/baseline_table.html
index 2bdc8bc..58e2fe0 100644
--- a/reference/baseline_table.html
+++ b/reference/baseline_table.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Print a flexible baseline characteristics table — baseline_table • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Print a flexible baseline characteristics table — baseline_table"><meta name="description" content="Print a flexible baseline characteristics table"><meta property="og:description" content="Print a flexible baseline characteristics table"><!-- dependencies from examples --></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Print a flexible baseline characteristics table — baseline_table • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Print a flexible baseline characteristics table — baseline_table"><meta name="description" content="Print a flexible baseline characteristics table"><meta property="og:description" content="Print a flexible baseline characteristics table"><!-- dependencies from examples --></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/clean_date.html b/reference/clean_date.html
index 1cb8f14..9bfecef 100644
--- a/reference/clean_date.html
+++ b/reference/clean_date.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Attempts at applying uniform date format — clean_date • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Attempts at applying uniform date format — clean_date"><meta name="description" content="Attempts at applying uniform date format"><meta property="og:description" content="Attempts at applying uniform date format"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Attempts at applying uniform date format — clean_date • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Attempts at applying uniform date format — clean_date"><meta name="description" content="Attempts at applying uniform date format"><meta property="og:description" content="Attempts at applying uniform date format"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/clean_sep.html b/reference/clean_sep.html
index f32edbd..f54b9cf 100644
--- a/reference/clean_sep.html
+++ b/reference/clean_sep.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>gsub wrapper for piping with default values for separator substituting — clean_sep • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="gsub wrapper for piping with default values for separator substituting — clean_sep"><meta name="description" content="gsub wrapper for piping with default values for separator substituting"><meta property="og:description" content="gsub wrapper for piping with default values for separator substituting"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>gsub wrapper for piping with default values for separator substituting — clean_sep • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="gsub wrapper for piping with default values for separator substituting — clean_sep"><meta name="description" content="gsub wrapper for piping with default values for separator substituting"><meta property="og:description" content="gsub wrapper for piping with default values for separator substituting"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/columnSelectInput.html b/reference/columnSelectInput.html
index cdcd4be..4d8ff59 100644
--- a/reference/columnSelectInput.html
+++ b/reference/columnSelectInput.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A selectizeInput customized for data frames with column labels — columnSelectInput • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="A selectizeInput customized for data frames with column labels — columnSelectInput"><meta name="description" content='Copied and modified from the IDEAFilter package
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A selectizeInput customized for data frames with column labels — columnSelectInput • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="A selectizeInput customized for data frames with column labels — columnSelectInput"><meta name="description" content='Copied and modified from the IDEAFilter package
 Adds the option to select "none" which is handled later'><meta property="og:description" content='Copied and modified from the IDEAFilter package
 Adds the option to select "none" which is handled later'></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -7,7 +7,7 @@ Adds the option to select "none" which is handled later'></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -17,7 +17,7 @@ Adds the option to select "none" which is handled later'></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/contrast_text.html b/reference/contrast_text.html
index e3af998..3872a51 100644
--- a/reference/contrast_text.html
+++ b/reference/contrast_text.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contrast Text Color — contrast_text • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Contrast Text Color — contrast_text"><meta name="description" content="Calculates the best contrast text color for a given
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contrast Text Color — contrast_text • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Contrast Text Color — contrast_text"><meta name="description" content="Calculates the best contrast text color for a given
 background color."><meta property="og:description" content="Calculates the best contrast text color for a given
 background color."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -7,7 +7,7 @@ background color."></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -17,7 +17,7 @@ background color."></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/create_overview_datagrid.html b/reference/create_overview_datagrid.html
index 72b95f3..76ba035 100644
--- a/reference/create_overview_datagrid.html
+++ b/reference/create_overview_datagrid.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a data overview datagrid — create_overview_datagrid • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a data overview datagrid — create_overview_datagrid"><meta name="description" content="Create a data overview datagrid"><meta property="og:description" content="Create a data overview datagrid"><!-- dependencies from examples --><script src="libs/htmlwidgets-1.6.4/htmlwidgets.js"></script><script src="libs/datagrid-binding-0.3.4/datagrid.js"></script><link href="libs/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="libs/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a data overview datagrid — create_overview_datagrid • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a data overview datagrid — create_overview_datagrid"><meta name="description" content="Create a data overview datagrid"><meta property="og:description" content="Create a data overview datagrid"><!-- dependencies from examples --><script src="libs/htmlwidgets-1.6.4/htmlwidgets.js"></script><script src="libs/datagrid-binding-0.3.4/datagrid.js"></script><link href="libs/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="libs/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/custom_theme.html b/reference/custom_theme.html
index 91fb887..888d1f5 100644
--- a/reference/custom_theme.html
+++ b/reference/custom_theme.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Custom theme based on unity — custom_theme • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Custom theme based on unity — custom_theme"><meta name="description" content="Custom theme based on unity"><meta property="og:description" content="Custom theme based on unity"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Custom theme based on unity — custom_theme • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Custom theme based on unity — custom_theme"><meta name="description" content="Custom theme based on unity"><meta property="og:description" content="Custom theme based on unity"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/cut-variable.html b/reference/cut-variable.html
index b5fd407..01ab14e 100644
--- a/reference/cut-variable.html
+++ b/reference/cut-variable.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Module to Convert Numeric to Factor — cut-variable • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Module to Convert Numeric to Factor — cut-variable"><meta name="description" content="This module contain an interface to cut a numeric into several intervals."><meta property="og:description" content="This module contain an interface to cut a numeric into several intervals."></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Module to Convert Numeric to Factor — cut-variable • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Module to Convert Numeric to Factor — cut-variable"><meta name="description" content="This module contain an interface to cut a numeric into several intervals."><meta property="og:description" content="This module contain an interface to cut a numeric into several intervals."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/cut.html b/reference/cut.html
index 60d6069..0e79a05 100644
--- a/reference/cut.html
+++ b/reference/cut.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extended cutting function — cut.hms • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Extended cutting function — cut.hms"><meta name="description" content="Extended cutting function"><meta property="og:description" content="Extended cutting function"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extended cutting function — cut.hms • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Extended cutting function — cut.hms"><meta name="description" content="Extended cutting function"><meta property="og:description" content="Extended cutting function"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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diff --git a/reference/data-correlations.html b/reference/data-correlations.html
index 8192149..1cbf26f 100644
--- a/reference/data-correlations.html
+++ b/reference/data-correlations.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data correlations evaluation module — data-correlations • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data correlations evaluation module — data-correlations"><meta name="description" content="Data correlations evaluation module"><meta property="og:description" content="Data correlations evaluation module"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data correlations evaluation module — data-correlations • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data correlations evaluation module — data-correlations"><meta name="description" content="Data correlations evaluation module"><meta property="og:description" content="Data correlations evaluation module"></head><body>
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     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/data-import.html b/reference/data-import.html
index 72ba6d2..94bfccc 100644
--- a/reference/data-import.html
+++ b/reference/data-import.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test app for the data-import module — data_import_demo_app • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test app for the data-import module — data_import_demo_app"><meta name="description" content="Test app for the data-import module"><meta property="og:description" content="Test app for the data-import module"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test app for the data-import module — data_import_demo_app • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test app for the data-import module — data_import_demo_app"><meta name="description" content="Test app for the data-import module"><meta property="og:description" content="Test app for the data-import module"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/data-plots.html b/reference/data-plots.html
index 605f746..0a68425 100644
--- a/reference/data-plots.html
+++ b/reference/data-plots.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data correlations evaluation module — data-plots • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data correlations evaluation module — data-plots"><meta name="description" content="Data correlations evaluation module
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data correlations evaluation module — data-plots • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data correlations evaluation module — data-plots"><meta name="description" content="Data correlations evaluation module
 Wrapper to create plot based on provided type
 Nice horizontal stacked bars (Grotta bars)
 Plot nice ridge plot
@@ -19,7 +19,7 @@ Beatiful violin plot"></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -29,7 +29,7 @@ Beatiful violin plot"></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/data-summary.html b/reference/data-summary.html
index 7dccc33..fb4ab4b 100644
--- a/reference/data-summary.html
+++ b/reference/data-summary.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data summary module — data-summary • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data summary module — data-summary"><meta name="description" content="Data summary module"><meta property="og:description" content="Data summary module"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data summary module — data-summary • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Data summary module — data-summary"><meta name="description" content="Data summary module"><meta property="og:description" content="Data summary module"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/default_format_arguments.html b/reference/default_format_arguments.html
index dcf89ea..43c9221 100644
--- a/reference/default_format_arguments.html
+++ b/reference/default_format_arguments.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Defaults qmd formats — default_format_arguments • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Defaults qmd formats — default_format_arguments"><meta name="description" content="Defaults qmd formats"><meta property="og:description" content="Defaults qmd formats"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Defaults qmd formats — default_format_arguments • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Defaults qmd formats — default_format_arguments"><meta name="description" content="Defaults qmd formats"><meta property="og:description" content="Defaults qmd formats"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/default_parsing.html b/reference/default_parsing.html
index 4e6d1d3..b88d0cf 100644
--- a/reference/default_parsing.html
+++ b/reference/default_parsing.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Default data parsing — default_parsing • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Default data parsing — default_parsing"><meta name="description" content="Default data parsing"><meta property="og:description" content="Default data parsing"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Default data parsing — default_parsing • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Default data parsing — default_parsing"><meta name="description" content="Default data parsing"><meta property="og:description" content="Default data parsing"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/drop_empty_event.html b/reference/drop_empty_event.html
index 907327d..f705339 100644
--- a/reference/drop_empty_event.html
+++ b/reference/drop_empty_event.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Drop empty events from REDCap export — drop_empty_event • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Drop empty events from REDCap export — drop_empty_event"><meta name="description" content="Drop empty events from REDCap export"><meta property="og:description" content="Drop empty events from REDCap export"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Drop empty events from REDCap export — drop_empty_event • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Drop empty events from REDCap export — drop_empty_event"><meta name="description" content="Drop empty events from REDCap export"><meta property="og:description" content="Drop empty events from REDCap export"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
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+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/factorize.html b/reference/factorize.html
index 5215521..c399ee3 100644
--- a/reference/factorize.html
+++ b/reference/factorize.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Factorize variables in data.frame — factorize • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Factorize variables in data.frame — factorize"><meta name="description" content="Factorize variables in data.frame"><meta property="og:description" content="Factorize variables in data.frame"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Factorize variables in data.frame — factorize • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Factorize variables in data.frame — factorize"><meta name="description" content="Factorize variables in data.frame"><meta property="og:description" content="Factorize variables in data.frame"></head><body>
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     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
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     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/file_export.html b/reference/file_export.html
index 410b58d..2d5c816 100644
--- a/reference/file_export.html
+++ b/reference/file_export.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Title — file_export • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Title — file_export"><meta name="description" content="Title"><meta property="og:description" content="Title"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Title — file_export • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Title — file_export"><meta name="description" content="Title"><meta property="og:description" content="Title"></head><body>
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     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/format_writer.html b/reference/format_writer.html
index a95249d..867caa9 100644
--- a/reference/format_writer.html
+++ b/reference/format_writer.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Merges list of named arguments for qmd header generation — format_writer • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Merges list of named arguments for qmd header generation — format_writer"><meta name="description" content="Merges list of named arguments for qmd header generation"><meta property="og:description" content="Merges list of named arguments for qmd header generation"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Merges list of named arguments for qmd header generation — format_writer • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Merges list of named arguments for qmd header generation — format_writer"><meta name="description" content="Merges list of named arguments for qmd header generation"><meta property="og:description" content="Merges list of named arguments for qmd header generation"></head><body>
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-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/get_fun_options.html b/reference/get_fun_options.html
index a6142d0..7c5de8a 100644
--- a/reference/get_fun_options.html
+++ b/reference/get_fun_options.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get the function options based on the selected function description — get_fun_options • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get the function options based on the selected function description — get_fun_options"><meta name="description" content="Get the function options based on the selected function description"><meta property="og:description" content="Get the function options based on the selected function description"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get the function options based on the selected function description — get_fun_options • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get the function options based on the selected function description — get_fun_options"><meta name="description" content="Get the function options based on the selected function description"><meta property="og:description" content="Get the function options based on the selected function description"></head><body>
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-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
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diff --git a/reference/get_label.html b/reference/get_label.html
index 00be3f7..b7834f9 100644
--- a/reference/get_label.html
+++ b/reference/get_label.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Print label, and if missing print variable name — get_label • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Print label, and if missing print variable name — get_label"><meta name="description" content="Print label, and if missing print variable name"><meta property="og:description" content="Print label, and if missing print variable name"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Print label, and if missing print variable name — get_label • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Print label, and if missing print variable name — get_label"><meta name="description" content="Print label, and if missing print variable name"><meta property="og:description" content="Print label, and if missing print variable name"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/get_plot_options.html b/reference/get_plot_options.html
index 9156b34..ec8ee4f 100644
--- a/reference/get_plot_options.html
+++ b/reference/get_plot_options.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get the function options based on the selected function description — get_plot_options • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get the function options based on the selected function description — get_plot_options"><meta name="description" content="Get the function options based on the selected function description"><meta property="og:description" content="Get the function options based on the selected function description"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get the function options based on the selected function description — get_plot_options • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get the function options based on the selected function description — get_plot_options"><meta name="description" content="Get the function options based on the selected function description"><meta property="og:description" content="Get the function options based on the selected function description"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/getfun.html b/reference/getfun.html
index 3fc40fc..6c4d0b2 100644
--- a/reference/getfun.html
+++ b/reference/getfun.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun"><meta name="description" content="This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package"><meta property="og:description" content="This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun"><meta name="description" content="This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package"><meta property="og:description" content="This function follows the idea from this comment: https://stackoverflow.com/questions/38983179/do-call-a-function-in-r-without-loading-the-package"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@@ -133,7 +133,7 @@
 <span class="r-out co"><span class="r-pr">#&gt;</span>         z$qr &lt;- NULL</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>     z</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;bytecode: 0x56354d94da30&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;bytecode: 0x5611a9ee8db0&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: namespace:stats&gt;</span>
 </code></pre></div>
     </div>
diff --git a/reference/gg_theme_export.html b/reference/gg_theme_export.html
index c7071f5..2165b48 100644
--- a/reference/gg_theme_export.html
+++ b/reference/gg_theme_export.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GGplot default theme for plotting export objects — gg_theme_export • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="GGplot default theme for plotting export objects — gg_theme_export"><meta name="description" content="GGplot default theme for plotting export objects"><meta property="og:description" content="GGplot default theme for plotting export objects"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GGplot default theme for plotting export objects — gg_theme_export • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="GGplot default theme for plotting export objects — gg_theme_export"><meta name="description" content="GGplot default theme for plotting export objects"><meta property="og:description" content="GGplot default theme for plotting export objects"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/gg_theme_shiny.html b/reference/gg_theme_shiny.html
index 91dfa3d..b27b099 100644
--- a/reference/gg_theme_shiny.html
+++ b/reference/gg_theme_shiny.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GGplot default theme for plotting in Shiny — gg_theme_shiny • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="GGplot default theme for plotting in Shiny — gg_theme_shiny"><meta name="description" content="GGplot default theme for plotting in Shiny"><meta property="og:description" content="GGplot default theme for plotting in Shiny"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GGplot default theme for plotting in Shiny — gg_theme_shiny • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="GGplot default theme for plotting in Shiny — gg_theme_shiny"><meta name="description" content="GGplot default theme for plotting in Shiny"><meta property="og:description" content="GGplot default theme for plotting in Shiny"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/ggeulerr.html b/reference/ggeulerr.html
index 20a81a8..26c593a 100644
--- a/reference/ggeulerr.html
+++ b/reference/ggeulerr.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Area proportional venn diagrams — ggeulerr • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Area proportional venn diagrams — ggeulerr"><meta name="description" content="THis is slightly modified from https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Area proportional venn diagrams — ggeulerr • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Area proportional venn diagrams — ggeulerr"><meta name="description" content="THis is slightly modified from https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded
 This functions uses eulerr::euler to plot area proportional venn diagramms
 but plots it using ggplot2"><meta property="og:description" content="THis is slightly modified from https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded
 This functions uses eulerr::euler to plot area proportional venn diagramms
@@ -9,7 +9,7 @@ but plots it using ggplot2"></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -19,7 +19,7 @@ but plots it using ggplot2"></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/grepl_fix.html b/reference/grepl_fix.html
index bca18b5..b1fa72f 100644
--- a/reference/grepl_fix.html
+++ b/reference/grepl_fix.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Matches pattern to vector based on match type — grepl_fix • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Matches pattern to vector based on match type — grepl_fix"><meta name="description" content="Matches pattern to vector based on match type"><meta property="og:description" content="Matches pattern to vector based on match type"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Matches pattern to vector based on match type — grepl_fix • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Matches pattern to vector based on match type — grepl_fix"><meta name="description" content="Matches pattern to vector based on match type"><meta property="og:description" content="Matches pattern to vector based on match type"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/import-file-type.html b/reference/import-file-type.html
index 2a61096..5918552 100644
--- a/reference/import-file-type.html
+++ b/reference/import-file-type.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to ease data file import — import-file-type • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to ease data file import — import-file-type"><meta name="description" content="Wrapper to ease data file import"><meta property="og:description" content="Wrapper to ease data file import"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to ease data file import — import-file-type • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to ease data file import — import-file-type"><meta name="description" content="Wrapper to ease data file import"><meta property="og:description" content="Wrapper to ease data file import"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/import-file.html b/reference/import-file.html
index 09c7d3b..c3ac865 100644
--- a/reference/import-file.html
+++ b/reference/import-file.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Import data from a file — import-file • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Import data from a file — import-file"><meta name="description" content="Let user upload a file and import data"><meta property="og:description" content="Let user upload a file and import data"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Import data from a file — import-file • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Import data from a file — import-file"><meta name="description" content="Let user upload a file and import data"><meta property="og:description" content="Let user upload a file and import data"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/import-file_module.html b/reference/import-file_module.html
index 0d48ed8..e1b4d17 100644
--- a/reference/import-file_module.html
+++ b/reference/import-file_module.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test app for the import_file module — import_file_demo_app • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test app for the import_file module — import_file_demo_app"><meta name="description" content="Test app for the import_file module"><meta property="og:description" content="Test app for the import_file module"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test app for the import_file module — import_file_demo_app • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test app for the import_file module — import_file_demo_app"><meta name="description" content="Test app for the import_file module"><meta property="og:description" content="Test app for the import_file module"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/index.html b/reference/index.html
index f26bf64..0dc62e8 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Package index"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Package index"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@@ -293,10 +293,10 @@
         <dd>Validate REDCap token</dd>
       </dl><dl><dt>
 
-          <code><a href="launch_freesearcheR.html">launch_freesearcheR()</a></code>
+          <code><a href="launch_FreesearchR.html">launch_FreesearchR()</a></code>
 
         </dt>
-        <dd>Easily launch the freesearcheR app</dd>
+        <dd>Easily launch the FreesearchR app</dd>
       </dl><dl><dt>
 
           <code><a href="line_break.html">line_break()</a></code>
@@ -425,12 +425,6 @@
         <dd>Create a select input control with icon(s)</dd>
       </dl><dl><dt>
 
-          <code><a href="shiny_freesearcheR.html">shiny_freesearcheR()</a></code>
-
-        </dt>
-        <dd>Launch the freesearcheR tool locally</dd>
-      </dl><dl><dt>
-
           <code><a href="specify_qmd_format.html">specify_qmd_format()</a></code>
 
         </dt>
@@ -461,7 +455,7 @@
         <dd>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names.</dd>
       </dl><dl><dt>
 
-          <code><a href="update-factor.html">update_factor_ui()</a></code> <code><a href="update-factor.html">update_factor_server()</a></code> <code><a href="update-factor.html">modal_update_factor()</a></code>
+          <code><a href="update-factor.html">update_factor_ui()</a></code> <code><a href="update-factor.html">update_factor_server()</a></code> <code><a href="update-factor.html">modal_update_factor()</a></code> <code><a href="update-factor.html">winbox_update_factor()</a></code>
 
         </dt>
         <dd>Module to Reorder the Levels of a Factor Variable</dd>
diff --git a/reference/index_embed.html b/reference/index_embed.html
index f5baf23..83e703d 100644
--- a/reference/index_embed.html
+++ b/reference/index_embed.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Split vector by an index and embed addition — index_embed • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Split vector by an index and embed addition — index_embed"><meta name="description" content="Split vector by an index and embed addition"><meta property="og:description" content="Split vector by an index and embed addition"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Split vector by an index and embed addition — index_embed • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Split vector by an index and embed addition — index_embed"><meta name="description" content="Split vector by an index and embed addition"><meta property="og:description" content="Split vector by an index and embed addition"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/is_any_class.html b/reference/is_any_class.html
index d9caed5..c08d628 100644
--- a/reference/is_any_class.html
+++ b/reference/is_any_class.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test class — is_any_class • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test class — is_any_class"><meta name="description" content="Test class"><meta property="og:description" content="Test class"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test class — is_any_class • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test class — is_any_class"><meta name="description" content="Test class"><meta property="og:description" content="Test class"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/is_consecutive.html b/reference/is_consecutive.html
index 7cf6096..e6ab830 100644
--- a/reference/is_consecutive.html
+++ b/reference/is_consecutive.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Checks if elements in vector are equally spaced as indication of ID — is_consecutive • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Checks if elements in vector are equally spaced as indication of ID — is_consecutive"><meta name="description" content="Checks if elements in vector are equally spaced as indication of ID"><meta property="og:description" content="Checks if elements in vector are equally spaced as indication of ID"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Checks if elements in vector are equally spaced as indication of ID — is_consecutive • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Checks if elements in vector are equally spaced as indication of ID — is_consecutive"><meta name="description" content="Checks if elements in vector are equally spaced as indication of ID"><meta property="og:description" content="Checks if elements in vector are equally spaced as indication of ID"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/is_datetime.html b/reference/is_datetime.html
index 05b9d07..52d14c7 100644
--- a/reference/is_datetime.html
+++ b/reference/is_datetime.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test is date/datetime/time — is_datetime • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test is date/datetime/time — is_datetime"><meta name="description" content="Test is date/datetime/time"><meta property="og:description" content="Test is date/datetime/time"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test is date/datetime/time — is_datetime • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test is date/datetime/time — is_datetime"><meta name="description" content="Test is date/datetime/time"><meta property="og:description" content="Test is date/datetime/time"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/is_valid_redcap_url.html b/reference/is_valid_redcap_url.html
index 79fb379..9abfce6 100644
--- a/reference/is_valid_redcap_url.html
+++ b/reference/is_valid_redcap_url.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test if url is valid format for REDCap API — is_valid_redcap_url • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test if url is valid format for REDCap API — is_valid_redcap_url"><meta name="description" content="Test if url is valid format for REDCap API"><meta property="og:description" content="Test if url is valid format for REDCap API"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test if url is valid format for REDCap API — is_valid_redcap_url • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Test if url is valid format for REDCap API — is_valid_redcap_url"><meta name="description" content="Test if url is valid format for REDCap API"><meta property="og:description" content="Test if url is valid format for REDCap API"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/is_valid_token.html b/reference/is_valid_token.html
index 54994a1..8d98e49 100644
--- a/reference/is_valid_token.html
+++ b/reference/is_valid_token.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Validate REDCap token — is_valid_token • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Validate REDCap token — is_valid_token"><meta name="description" content="Validate REDCap token"><meta property="og:description" content="Validate REDCap token"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Validate REDCap token — is_valid_token • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Validate REDCap token — is_valid_token"><meta name="description" content="Validate REDCap token"><meta property="og:description" content="Validate REDCap token"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/launch_FreesearchR.html b/reference/launch_FreesearchR.html
new file mode 100644
index 0000000..a1d1f9e
--- /dev/null
+++ b/reference/launch_FreesearchR.html
@@ -0,0 +1,88 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily launch the FreesearchR app — launch_FreesearchR • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily launch the FreesearchR app — launch_FreesearchR"><meta name="description" content="All data.frames in the global environment will be accessible through the app."><meta property="og:description" content="All data.frames in the global environment will be accessible through the app."></head><body>
+    <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
+
+
+    <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
+
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
+
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
+
+
+    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>
+
+    <div id="navbar" class="collapse navbar-collapse ms-3">
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
+<li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
+<li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
+<li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
+<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
+      </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
+ <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/freesearcheR/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+      </ul></div>
+
+
+  </div>
+</nav><div class="container template-reference-topic">
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+
+      <h1>Easily launch the FreesearchR app</h1>
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/freesearcheR/blob/main/R/launch_FreesearchR.R" class="external-link"><code>R/launch_FreesearchR.R</code></a></small>
+      <div class="d-none name"><code>launch_FreesearchR.Rd</code></div>
+    </div>
+
+    <div class="ref-description section level2">
+    <p>All data.frames in the global environment will be accessible through the app.</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">launch_FreesearchR</span><span class="op">(</span><span class="va">...</span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div class="section level2">
+    <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
+
+
+<dl><dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
+<dd><p>passed on to <code><a href="https://rdrr.io/pkg/shiny/man/runApp.html" class="external-link">shiny::runApp()</a></code></p></dd>
+
+</dl></div>
+    <div class="section level2">
+    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
+    <p>shiny app</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">mtcars</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu">shiny_FreesearchR</span><span class="op">(</span>launch.browser <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
+</code></pre></div>
+    </div>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
+    </nav></aside></div>
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p>Developed by Andreas Gammelgaard Damsbo. Provided without <strong>any warranty</strong>.</p>
+</div>
+
+    </footer></div>
+
+
+
+
+
+  </body></html>
+
diff --git a/reference/line_break.html b/reference/line_break.html
index 351edae..5f1beb8 100644
--- a/reference/line_break.html
+++ b/reference/line_break.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Line breaking at given number of characters for nicely plotting labels — line_break • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Line breaking at given number of characters for nicely plotting labels — line_break"><meta name="description" content="Line breaking at given number of characters for nicely plotting labels"><meta property="og:description" content="Line breaking at given number of characters for nicely plotting labels"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Line breaking at given number of characters for nicely plotting labels — line_break • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Line breaking at given number of characters for nicely plotting labels — line_break"><meta name="description" content="Line breaking at given number of characters for nicely plotting labels"><meta property="og:description" content="Line breaking at given number of characters for nicely plotting labels"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/m_datafileUI.html b/reference/m_datafileUI.html
index c542c8c..739ae64 100644
--- a/reference/m_datafileUI.html
+++ b/reference/m_datafileUI.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Shiny UI module to load a data file — m_datafileUI • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Shiny UI module to load a data file — m_datafileUI"><meta name="description" content="Shiny UI module to load a data file"><meta property="og:description" content="Shiny UI module to load a data file"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Shiny UI module to load a data file — m_datafileUI • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Shiny UI module to load a data file — m_datafileUI"><meta name="description" content="Shiny UI module to load a data file"><meta property="og:description" content="Shiny UI module to load a data file"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/merge_long.html b/reference/merge_long.html
index 7bb36b2..539cd3c 100644
--- a/reference/merge_long.html
+++ b/reference/merge_long.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to pivot gtsummary table data to long for plotting — merge_long • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to pivot gtsummary table data to long for plotting — merge_long"><meta name="description" content="Wrapper to pivot gtsummary table data to long for plotting"><meta property="og:description" content="Wrapper to pivot gtsummary table data to long for plotting"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to pivot gtsummary table data to long for plotting — merge_long • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to pivot gtsummary table data to long for plotting — merge_long"><meta name="description" content="Wrapper to pivot gtsummary table data to long for plotting"><meta property="og:description" content="Wrapper to pivot gtsummary table data to long for plotting"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/missing_fraction.html b/reference/missing_fraction.html
index e4256ad..d8d6c27 100644
--- a/reference/missing_fraction.html
+++ b/reference/missing_fraction.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get missingsness fraction — missing_fraction • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get missingsness fraction — missing_fraction"><meta name="description" content="Get missingsness fraction"><meta property="og:description" content="Get missingsness fraction"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get missingsness fraction — missing_fraction • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get missingsness fraction — missing_fraction"><meta name="description" content="Get missingsness fraction"><meta property="og:description" content="Get missingsness fraction"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/modify_qmd.html b/reference/modify_qmd.html
index f6d16cc..bf139a7 100644
--- a/reference/modify_qmd.html
+++ b/reference/modify_qmd.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to modify quarto file to render specific formats — modify_qmd • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to modify quarto file to render specific formats — modify_qmd"><meta name="description" content="Wrapper to modify quarto file to render specific formats"><meta property="og:description" content="Wrapper to modify quarto file to render specific formats"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to modify quarto file to render specific formats — modify_qmd • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to modify quarto file to render specific formats — modify_qmd"><meta name="description" content="Wrapper to modify quarto file to render specific formats"><meta property="og:description" content="Wrapper to modify quarto file to render specific formats"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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diff --git a/reference/outcome_type.html b/reference/outcome_type.html
index 3021120..551b431 100644
--- a/reference/outcome_type.html
+++ b/reference/outcome_type.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Outcome data type assessment — outcome_type • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Outcome data type assessment — outcome_type"><meta name="description" content="Outcome data type assessment"><meta property="og:description" content="Outcome data type assessment"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Outcome data type assessment — outcome_type • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Outcome data type assessment — outcome_type"><meta name="description" content="Outcome data type assessment"><meta property="og:description" content="Outcome data type assessment"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/overview_vars.html b/reference/overview_vars.html
index 607bb74..dbb014e 100644
--- a/reference/overview_vars.html
+++ b/reference/overview_vars.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a data overview data.frame ready for sparklines — overview_vars • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a data overview data.frame ready for sparklines — overview_vars"><meta name="description" content="Create a data overview data.frame ready for sparklines"><meta property="og:description" content="Create a data overview data.frame ready for sparklines"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a data overview data.frame ready for sparklines — overview_vars • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a data overview data.frame ready for sparklines — overview_vars"><meta name="description" content="Create a data overview data.frame ready for sparklines"><meta property="og:description" content="Create a data overview data.frame ready for sparklines"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/plot.tbl_regression.html b/reference/plot.tbl_regression.html
index 77278c7..4eb2bb0 100644
--- a/reference/plot.tbl_regression.html
+++ b/reference/plot.tbl_regression.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression"><meta name="description" content="Regression coef plot from gtsummary. Slightly modified to pass on arguments"><meta property="og:description" content="Regression coef plot from gtsummary. Slightly modified to pass on arguments"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression"><meta name="description" content="Regression coef plot from gtsummary. Slightly modified to pass on arguments"><meta property="og:description" content="Regression coef plot from gtsummary. Slightly modified to pass on arguments"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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@@ -43,7 +43,13 @@
     <div class="section level2">
     <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'tbl_regression'</span></span>
-<span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
+<span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span></span>
+<span>  <span class="va">x</span>,</span>
+<span>  plot_ref <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span>  remove_header_rows <span class="op">=</span> <span class="cn">TRUE</span>,</span>
+<span>  remove_reference_rows <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span>  <span class="va">...</span></span>
+<span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div class="section level2">
@@ -67,7 +73,7 @@ A 'tbl_regression' or 'tbl_uvregression' object</p></dd>
     <div class="section level2">
     <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
-<span class="r-in"><span><span class="va">mod</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/lm.html" class="external-link">lm</a></span><span class="op">(</span><span class="va">mpg</span> <span class="op">~</span> <span class="va">.</span>, <span class="va">mtcars</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">mod</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/stats/lm.html" class="external-link">lm</a></span><span class="op">(</span><span class="va">mpg</span> <span class="op">~</span> <span class="va">.</span>, <span class="fu"><a href="default_parsing.html">default_parsing</a></span><span class="op">(</span><span class="va">mtcars</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="va">p</span> <span class="op">&lt;-</span> <span class="va">mod</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_regression.html" class="external-link">tbl_regression</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span>colour <span class="op">=</span> <span class="st">"variable"</span><span class="op">)</span></span></span>
diff --git a/reference/plot_euler.html b/reference/plot_euler.html
index 2cf6b68..f3f2c50 100644
--- a/reference/plot_euler.html
+++ b/reference/plot_euler.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily plot euler diagrams — plot_euler • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily plot euler diagrams — plot_euler"><meta name="description" content="Easily plot euler diagrams"><meta property="og:description" content="Easily plot euler diagrams"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily plot euler diagrams — plot_euler • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily plot euler diagrams — plot_euler"><meta name="description" content="Easily plot euler diagrams"><meta property="og:description" content="Easily plot euler diagrams"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
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diff --git a/reference/plot_euler_single.html b/reference/plot_euler_single.html
index a62fb82..c1af89b 100644
--- a/reference/plot_euler_single.html
+++ b/reference/plot_euler_single.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily plot single euler diagrams — plot_euler_single • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily plot single euler diagrams — plot_euler_single"><meta name="description" content="Easily plot single euler diagrams"><meta property="og:description" content="Easily plot single euler diagrams"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily plot single euler diagrams — plot_euler_single • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily plot single euler diagrams — plot_euler_single"><meta name="description" content="Easily plot single euler diagrams"><meta property="og:description" content="Easily plot single euler diagrams"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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diff --git a/reference/plot_sankey_single.html b/reference/plot_sankey_single.html
index 882df72..4d6792d 100644
--- a/reference/plot_sankey_single.html
+++ b/reference/plot_sankey_single.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Beautiful sankey plot — plot_sankey_single • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Beautiful sankey plot — plot_sankey_single"><meta name="description" content="Beautiful sankey plot"><meta property="og:description" content="Beautiful sankey plot"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Beautiful sankey plot — plot_sankey_single • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Beautiful sankey plot — plot_sankey_single"><meta name="description" content="Beautiful sankey plot"><meta property="og:description" content="Beautiful sankey plot"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/possible_functions.html b/reference/possible_functions.html
index 3f1c577..f326418 100644
--- a/reference/possible_functions.html
+++ b/reference/possible_functions.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get possible regression models — possible_functions • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get possible regression models — possible_functions"><meta name="description" content="Get possible regression models"><meta property="og:description" content="Get possible regression models"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get possible regression models — possible_functions • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get possible regression models — possible_functions"><meta name="description" content="Get possible regression models"><meta property="og:description" content="Get possible regression models"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/possible_plots.html b/reference/possible_plots.html
index b493c7c..547536b 100644
--- a/reference/possible_plots.html
+++ b/reference/possible_plots.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get possible regression models — possible_plots • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get possible regression models — possible_plots"><meta name="description" content="Get possible regression models"><meta property="og:description" content="Get possible regression models"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get possible regression models — possible_plots • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get possible regression models — possible_plots"><meta name="description" content="Get possible regression models"><meta property="og:description" content="Get possible regression models"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/read_input.html b/reference/read_input.html
index 3620cf9..4f1c50d 100644
--- a/reference/read_input.html
+++ b/reference/read_input.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Flexible file import based on extension — read_input • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Flexible file import based on extension — read_input"><meta name="description" content="Flexible file import based on extension"><meta property="og:description" content="Flexible file import based on extension"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Flexible file import based on extension — read_input • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Flexible file import based on extension — read_input"><meta name="description" content="Flexible file import based on extension"><meta property="og:description" content="Flexible file import based on extension"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/redcap_read_shiny_module.html b/reference/redcap_read_shiny_module.html
index 71aba92..e069e2d 100644
--- a/reference/redcap_read_shiny_module.html
+++ b/reference/redcap_read_shiny_module.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Shiny module to browser and export REDCap data — m_redcap_readUI • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Shiny module to browser and export REDCap data — m_redcap_readUI"><meta name="description" content="Shiny module to browser and export REDCap data
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Shiny module to browser and export REDCap data — m_redcap_readUI • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Shiny module to browser and export REDCap data — m_redcap_readUI"><meta name="description" content="Shiny module to browser and export REDCap data
 Test app for the redcap_read_shiny_module"><meta property="og:description" content="Shiny module to browser and export REDCap data
 Test app for the redcap_read_shiny_module"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -7,7 +7,7 @@ Test app for the redcap_read_shiny_module"></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -17,7 +17,7 @@ Test app for the redcap_read_shiny_module"></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/regression_model.html b/reference/regression_model.html
index c6e708d..18e5501 100644
--- a/reference/regression_model.html
+++ b/reference/regression_model.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a regression model programatically — regression_model • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a regression model programatically — regression_model"><meta name="description" content="Output is a concatenated list of model information and model"><meta property="og:description" content="Output is a concatenated list of model information and model"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a regression model programatically — regression_model • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a regression model programatically — regression_model"><meta name="description" content="Output is a concatenated list of model information and model"><meta property="og:description" content="Output is a concatenated list of model information and model"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/regression_table.html b/reference/regression_table.html
index 40136f7..6e2e95b 100644
--- a/reference/regression_table.html
+++ b/reference/regression_table.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create table of regression model — regression_table • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create table of regression model — regression_table"><meta name="description" content="Create table of regression model"><meta property="og:description" content="Create table of regression model"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create table of regression model — regression_table • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create table of regression model — regression_table"><meta name="description" content="Create table of regression model"><meta property="og:description" content="Create table of regression model"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@@ -143,7 +143,7 @@
 <span class="r-in"><span><span class="co">#' @export</span></span></span>
 <span class="r-in"><span><span class="va">regression_table.default</span> <span class="op">&lt;-</span> <span class="kw">function</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span>, <span class="va">args.list</span> <span class="op">=</span> <span class="cn">NULL</span>, <span class="va">fun</span> <span class="op">=</span> <span class="st">"gtsummary::tbl_regression"</span><span class="op">)</span> <span class="op">{</span></span></span>
 <span class="r-in"><span>  <span class="co"># Stripping custom class</span></span></span>
-<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">!=</span> <span class="st">"freesearcher_model"</span><span class="op">]</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">!=</span> <span class="st">"freesearchr_model"</span><span class="op">]</span></span></span>
 <span class="r-in"><span></span></span>
 <span class="r-in"><span>  <span class="kw">if</span> <span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/any.html" class="external-link">any</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/length.html" class="external-link">length</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span><span class="op">)</span> <span class="op">!=</span> <span class="fl">1</span>, <span class="fu"><a href="https://rdrr.io/r/base/class.html" class="external-link">class</a></span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="op">!=</span> <span class="st">"lm"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
 <span class="r-in"><span>    <span class="kw">if</span> <span class="op">(</span><span class="op">!</span><span class="st">"exponentiate"</span> <span class="op"><a href="https://rdrr.io/r/base/match.html" class="external-link">%in%</a></span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">args.list</span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span>
diff --git a/reference/remove_empty_cols.html b/reference/remove_empty_cols.html
index 5bbe233..ce4fc57 100644
--- a/reference/remove_empty_cols.html
+++ b/reference/remove_empty_cols.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Removes columns with completenes below cutoff — remove_empty_cols • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Removes columns with completenes below cutoff — remove_empty_cols"><meta name="description" content="Removes columns with completenes below cutoff"><meta property="og:description" content="Removes columns with completenes below cutoff"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Removes columns with completenes below cutoff — remove_empty_cols • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Removes columns with completenes below cutoff — remove_empty_cols"><meta name="description" content="Removes columns with completenes below cutoff"><meta property="og:description" content="Removes columns with completenes below cutoff"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/remove_na_attr.html b/reference/remove_na_attr.html
index 48bdd8c..dd34830 100644
--- a/reference/remove_na_attr.html
+++ b/reference/remove_na_attr.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Remove NA labels — remove_na_attr • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Remove NA labels — remove_na_attr"><meta name="description" content="Remove NA labels"><meta property="og:description" content="Remove NA labels"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Remove NA labels — remove_na_attr • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Remove NA labels — remove_na_attr"><meta name="description" content="Remove NA labels"><meta property="og:description" content="Remove NA labels"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/repeated_instruments.html b/reference/repeated_instruments.html
index a55d023..3e51d33 100644
--- a/reference/repeated_instruments.html
+++ b/reference/repeated_instruments.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get names of repeated instruments — repeated_instruments • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get names of repeated instruments — repeated_instruments"><meta name="description" content="Get names of repeated instruments"><meta property="og:description" content="Get names of repeated instruments"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get names of repeated instruments — repeated_instruments • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Get names of repeated instruments — repeated_instruments"><meta name="description" content="Get names of repeated instruments"><meta property="og:description" content="Get names of repeated instruments"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/selectInputIcon.html b/reference/selectInputIcon.html
index e67660b..a126393 100644
--- a/reference/selectInputIcon.html
+++ b/reference/selectInputIcon.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a select input control with icon(s) — selectInputIcon • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a select input control with icon(s) — selectInputIcon"><meta name="description" content="Extend form controls by adding text or icons before,
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create a select input control with icon(s) — selectInputIcon • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Create a select input control with icon(s) — selectInputIcon"><meta name="description" content="Extend form controls by adding text or icons before,
 after, or on both sides of a classic selectInput."><meta property="og:description" content="Extend form controls by adding text or icons before,
 after, or on both sides of a classic selectInput."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -7,7 +7,7 @@ after, or on both sides of a classic selectInput."></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -17,7 +17,7 @@ after, or on both sides of a classic selectInput."></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/specify_qmd_format.html b/reference/specify_qmd_format.html
index 7331acc..b07773a 100644
--- a/reference/specify_qmd_format.html
+++ b/reference/specify_qmd_format.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Specify format arguments to include in qmd header/frontmatter — specify_qmd_format • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Specify format arguments to include in qmd header/frontmatter — specify_qmd_format"><meta name="description" content="Specify format arguments to include in qmd header/frontmatter"><meta property="og:description" content="Specify format arguments to include in qmd header/frontmatter"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Specify format arguments to include in qmd header/frontmatter — specify_qmd_format • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Specify format arguments to include in qmd header/frontmatter — specify_qmd_format"><meta name="description" content="Specify format arguments to include in qmd header/frontmatter"><meta property="og:description" content="Specify format arguments to include in qmd header/frontmatter"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/subset_types.html b/reference/subset_types.html
index da1c82f..661e63d 100644
--- a/reference/subset_types.html
+++ b/reference/subset_types.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily subset by data type function — subset_types • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily subset by data type function — subset_types"><meta name="description" content="Easily subset by data type function"><meta property="og:description" content="Easily subset by data type function"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Easily subset by data type function — subset_types • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Easily subset by data type function — subset_types"><meta name="description" content="Easily subset by data type function"><meta property="og:description" content="Easily subset by data type function"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/supported_functions.html b/reference/supported_functions.html
index 415ccc3..50da9b2 100644
--- a/reference/supported_functions.html
+++ b/reference/supported_functions.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Implemented functions — supported_functions • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Implemented functions — supported_functions"><meta name="description" content='Library of supported functions. The list name and "descr" element should be
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Implemented functions — supported_functions • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Implemented functions — supported_functions"><meta name="description" content='Library of supported functions. The list name and "descr" element should be
 unique for each element on list.'><meta property="og:description" content='Library of supported functions. The list name and "descr" element should be
 unique for each element on list.'></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -7,7 +7,7 @@ unique for each element on list.'></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -17,7 +17,7 @@ unique for each element on list.'></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/supported_plots.html b/reference/supported_plots.html
index 319973f..c0fd19a 100644
--- a/reference/supported_plots.html
+++ b/reference/supported_plots.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Implemented functions — supported_plots • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Implemented functions — supported_plots"><meta name="description" content='Library of supported functions. The list name and "descr" element should be
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Implemented functions — supported_plots • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Implemented functions — supported_plots"><meta name="description" content='Library of supported functions. The list name and "descr" element should be
 unique for each element on list.
 descr: Plot description
 primary.type: Primary variable data type (continuous, dichotomous or ordinal)
@@ -21,7 +21,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -31,7 +31,7 @@ tertiary.type: Tertiary variable data type (continuous, dichotomous or ordinal)
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/tbl_merge.html b/reference/tbl_merge.html
index 5f4bcc2..ceb1d67 100644
--- a/reference/tbl_merge.html
+++ b/reference/tbl_merge.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge"><meta name="description" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge"><meta name="description" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab
 spanner names."><meta property="og:description" content="A substitue to gtsummary::tbl_merge, that will use list names for the tab
 spanner names."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -7,7 +7,7 @@ spanner names."></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -17,7 +17,7 @@ spanner names."></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/update-factor.html b/reference/update-factor.html
index 514eb61..6a61c29 100644
--- a/reference/update-factor.html
+++ b/reference/update-factor.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Module to Reorder the Levels of a Factor Variable — update-factor • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Module to Reorder the Levels of a Factor Variable — update-factor"><meta name="description" content="This module contain an interface to reorder the levels of a factor variable."><meta property="og:description" content="This module contain an interface to reorder the levels of a factor variable."></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Module to Reorder the Levels of a Factor Variable — update-factor • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Module to Reorder the Levels of a Factor Variable — update-factor"><meta name="description" content="This module contain an interface to reorder the levels of a factor variable."><meta property="og:description" content="This module contain an interface to reorder the levels of a factor variable."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
@@ -52,6 +52,13 @@
 <span>  easyClose <span class="op">=</span> <span class="cn">TRUE</span>,</span>
 <span>  size <span class="op">=</span> <span class="st">"l"</span>,</span>
 <span>  footer <span class="op">=</span> <span class="cn">NULL</span></span>
+<span><span class="op">)</span></span>
+<span></span>
+<span><span class="fu">winbox_update_factor</span><span class="op">(</span></span>
+<span>  <span class="va">id</span>,</span>
+<span>  title <span class="op">=</span> <span class="fu">i18n</span><span class="op">(</span><span class="st">"Update levels of a factor"</span><span class="op">)</span>,</span>
+<span>  options <span class="op">=</span> <span class="fu">shinyWidgets</span><span class="fu">::</span><span class="fu"><a href="https://dreamrs.github.io/shinyWidgets/reference/wbOptions.html" class="external-link">wbOptions</a></span><span class="op">(</span><span class="op">)</span>,</span>
+<span>  controls <span class="op">=</span> <span class="fu">shinyWidgets</span><span class="fu">::</span><span class="fu"><a href="https://dreamrs.github.io/shinyWidgets/reference/wbControls.html" class="external-link">wbControls</a></span><span class="op">(</span><span class="op">)</span></span>
 <span><span class="op">)</span></span></code></pre></div>
     </div>
 
@@ -90,6 +97,14 @@ like <code><a href="https://rdrr.io/pkg/shiny/man/fluidPage.html" class="externa
 <dt id="arg-footer">footer<a class="anchor" aria-label="anchor" href="#arg-footer"></a></dt>
 <dd><p>UI for footer. Use <code>NULL</code> for no footer.</p></dd>
 
+
+<dt id="arg-options">options<a class="anchor" aria-label="anchor" href="#arg-options"></a></dt>
+<dd><p>List of options, see <code><a href="https://dreamrs.github.io/shinyWidgets/reference/wbOptions.html" class="external-link">wbOptions()</a></code>.</p></dd>
+
+
+<dt id="arg-controls">controls<a class="anchor" aria-label="anchor" href="#arg-controls"></a></dt>
+<dd><p>List of controls, see <code><a href="https://dreamrs.github.io/shinyWidgets/reference/wbControls.html" class="external-link">wbControls()</a></code>.</p></dd>
+
 </dl></div>
     <div class="section level2">
     <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
diff --git a/reference/update-variables.html b/reference/update-variables.html
index 6828124..a188e7a 100644
--- a/reference/update-variables.html
+++ b/reference/update-variables.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Select, rename and convert variables — update-variables • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Select, rename and convert variables — update-variables"><meta name="description" content="Select, rename and convert variables"><meta property="og:description" content="Select, rename and convert variables"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Select, rename and convert variables — update-variables • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Select, rename and convert variables — update-variables"><meta name="description" content="Select, rename and convert variables"><meta property="og:description" content="Select, rename and convert variables"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/update_variables_datagrid.html b/reference/update_variables_datagrid.html
index 5aef212..19af119 100644
--- a/reference/update_variables_datagrid.html
+++ b/reference/update_variables_datagrid.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Modified from the datamods pacakge — update_variables_datagrid • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Modified from the datamods pacakge — update_variables_datagrid"><meta name="description" content="Modified from the datamods pacakge"><meta property="og:description" content="Modified from the datamods pacakge"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Modified from the datamods pacakge — update_variables_datagrid • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Modified from the datamods pacakge — update_variables_datagrid"><meta name="description" content="Modified from the datamods pacakge"><meta property="og:description" content="Modified from the datamods pacakge"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/vectorSelectInput.html b/reference/vectorSelectInput.html
index 5726b8e..77050c9 100644
--- a/reference/vectorSelectInput.html
+++ b/reference/vectorSelectInput.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A selectizeInput customized for named vectors — vectorSelectInput • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="A selectizeInput customized for named vectors — vectorSelectInput"><meta name="description" content="A selectizeInput customized for named vectors"><meta property="og:description" content="A selectizeInput customized for named vectors"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>A selectizeInput customized for named vectors — vectorSelectInput • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="A selectizeInput customized for named vectors — vectorSelectInput"><meta name="description" content="A selectizeInput customized for named vectors"><meta property="og:description" content="A selectizeInput customized for named vectors"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/vertical_stacked_bars.html b/reference/vertical_stacked_bars.html
index 290abca..b7136b4 100644
--- a/reference/vertical_stacked_bars.html
+++ b/reference/vertical_stacked_bars.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Vertical stacked bar plot wrapper — vertical_stacked_bars • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Vertical stacked bar plot wrapper — vertical_stacked_bars"><meta name="description" content="Vertical stacked bar plot wrapper"><meta property="og:description" content="Vertical stacked bar plot wrapper"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Vertical stacked bar plot wrapper — vertical_stacked_bars • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Vertical stacked bar plot wrapper — vertical_stacked_bars"><meta name="description" content="Vertical stacked bar plot wrapper"><meta property="og:description" content="Vertical stacked bar plot wrapper"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/wide2long.html b/reference/wide2long.html
index 43e51dc..09994fc 100644
--- a/reference/wide2long.html
+++ b/reference/wide2long.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Alternative pivoting method for easily pivoting based on name pattern — wide2long • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Alternative pivoting method for easily pivoting based on name pattern — wide2long"><meta name="description" content='This function requires and assumes a systematic naming of variables.
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Alternative pivoting method for easily pivoting based on name pattern — wide2long • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Alternative pivoting method for easily pivoting based on name pattern — wide2long"><meta name="description" content='This function requires and assumes a systematic naming of variables.
 For now only supports one level pivoting. Adding more levels would require
 an added "ignore" string pattern or similarly. Example 2.'><meta property="og:description" content='This function requires and assumes a systematic naming of variables.
 For now only supports one level pivoting. Adding more levels would require
@@ -9,7 +9,7 @@ an added "ignore" string pattern or similarly. Example 2.'></head><body>
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -19,7 +19,7 @@ an added "ignore" string pattern or similarly. Example 2.'></head><body>
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
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 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/reference/winbox_update_factor.html b/reference/winbox_update_factor.html
new file mode 100644
index 0000000..38f28b8
--- /dev/null
+++ b/reference/winbox_update_factor.html
@@ -0,0 +1,8 @@
+<html>
+  <head>
+    <meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/freesearcheR/reference/update-factor.html" />
+    <meta name="robots" content="noindex">
+    <link rel="canonical" href="https://agdamsbo.github.io/freesearcheR/reference/update-factor.html">
+  </head>
+</html>
+
diff --git a/reference/write_quarto.html b/reference/write_quarto.html
index e4511de..82e25d6 100644
--- a/reference/write_quarto.html
+++ b/reference/write_quarto.html
@@ -1,11 +1,11 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to save data in RDS, load into specified qmd and render — write_quarto • freesearcheR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to save data in RDS, load into specified qmd and render — write_quarto"><meta name="description" content="Wrapper to save data in RDS, load into specified qmd and render"><meta property="og:description" content="Wrapper to save data in RDS, load into specified qmd and render"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Wrapper to save data in RDS, load into specified qmd and render — write_quarto • FreesearchR</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/Montserrat-0.4.9/font.css" rel="stylesheet"><link href="../deps/Public_Sans-0.4.9/font.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><link href="../extra.css" rel="stylesheet"><meta property="og:title" content="Wrapper to save data in RDS, load into specified qmd and render — write_quarto"><meta name="description" content="Wrapper to save data in RDS, load into specified qmd and render"><meta property="og:description" content="Wrapper to save data in RDS, load into specified qmd and render"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
     <nav class="navbar navbar-expand-lg fixed-top bg-primary" data-bs-theme="dark" aria-label="Site navigation"><div class="container">
 
-    <a class="navbar-brand me-2" href="../index.html">freesearcheR</a>
+    <a class="navbar-brand me-2" href="../index.html">FreesearchR</a>
 
     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.3.2</small>
 
@@ -15,7 +15,7 @@
     </button>
 
     <div id="navbar" class="collapse navbar-collapse ms-3">
-      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/freesearcheR.html">Get started</a></li>
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/FreesearchR.html">Get started</a></li>
 <li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
 <li class="nav-item"><a class="nav-link" href="../ROADMAP.html">Roadmap</a></li>
 <li class="nav-item"><a class="nav-link" href="../QA.html">Q&amp;A</a></li>
diff --git a/search.json b/search.json
index a073882..b880721 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. 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License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. License gives permission license work way, invalidate permission separately received . work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. 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Convey object code using peer--peer transmission, provided inform peers object code Corresponding Source work offered general public charge subsection 6d. separable portion object code, whose source code excluded Corresponding Source System Library, need included conveying object code work. “User Product” either (1) “consumer product”, means tangible personal property normally used personal, family, household purposes, (2) anything designed sold incorporation dwelling. determining whether product consumer product, doubtful cases shall resolved favor coverage. particular product received particular user, “normally used” refers typical common use class product, regardless status particular user way particular user actually uses, expects expected use, product. product consumer product regardless whether product substantial commercial, industrial non-consumer uses, unless uses represent significant mode use product. “Installation Information” User Product means methods, procedures, authorization keys, information required install execute modified versions covered work User Product modified version Corresponding Source. information must suffice ensure continued functioning modified object code case prevented interfered solely modification made. convey object code work section , , specifically use , User Product, conveying occurs part transaction right possession use User Product transferred recipient perpetuity fixed term (regardless transaction characterized), Corresponding Source conveyed section must accompanied Installation Information. requirement apply neither third party retains ability install modified object code User Product (example, work installed ROM). requirement provide Installation Information include requirement continue provide support service, warranty, updates work modified installed recipient, User Product modified installed. 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Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. Notwithstanding provision License, material add covered work, may (authorized copyright holders material) supplement terms License terms: Disclaiming warranty limiting liability differently terms sections 15 16 License; Requiring preservation specified reasonable legal notices author attributions material Appropriate Legal Notices displayed works containing ; Prohibiting misrepresentation origin material, requiring modified versions material marked reasonable ways different original version; Limiting use publicity purposes names licensors authors material; Declining grant rights trademark law use trade names, trademarks, service marks; Requiring indemnification licensors authors material anyone conveys material (modified versions ) contractual assumptions liability recipient, liability contractual assumptions directly impose licensors authors. non-permissive additional terms considered “restrictions” within meaning section 10. Program received , part , contains notice stating governed License along term restriction, may remove term. license document contains restriction permits relicensing conveying License, may add covered work material governed terms license document, provided restriction survive relicensing conveying. add terms covered work accord section, must place, relevant source files, statement additional terms apply files, notice indicating find applicable terms. Additional terms, permissive non-permissive, may stated form separately written license, stated exceptions; requirements apply either way.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_8-termination","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"8. Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. 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Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. 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Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":"<one line to give the program's name and a brief idea of what it does.>     Copyright (C) <year>  <name of author>      This program is free software: you can redistribute it and/or modify     it under the terms of the GNU Affero General Public License as     published by the Free Software Foundation, either version 3 of the     License, or (at your option) any later version.      This program is distributed in the hope that it will be useful,     but WITHOUT ANY WARRANTY; without even the implied warranty of     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the     GNU Affero General Public License for more details.      You should have received a copy of the GNU Affero General Public License     along with this program.  If not, see <https://www.gnu.org/licenses/>."},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set available, collection questions answers project use app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, lot things still changing. , however, usable state, basic functions available user. (actual list quite long growing) planned features improvements: Stratified analyses Additional study designs: Cross-sectional data analyses Longitudinal data analyses Survival analysis detailed variable browser Add histograms data distribution. 2025-01-16 Option edit labels. 2025-01-16 output controls Theming output tables Select analyses include report Export modified data. 2025-01-16 Include reproducible code steps (maybe , steps, final dataset can exported) Modify factor levels Factor level modifications possible converting factors numeric > cutting numeric desired fixed values. 2024-12-12 options date/datetime/time grouping/factoring. Included weekday month-options. 2024-12-12 Graphs plots Correlation matrix plot data exploration 2025-2-20 Grotta bars ordianl outcomes (sankey) 2025-3-17 Coefficient plotting regression analyses (forest plot) 2025-2-20","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html","id":"getting-started-with-freesearcher","dir":"Articles","previous_headings":"","what":"Getting started with freesearcheR","title":"freesearcheR","text":"simple walk-trough basic instructions functions freesearcheR app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html","id":"launching","dir":"Articles","previous_headings":"Getting started with freesearcheR","what":"Launching","title":"freesearcheR","text":"easiest way get started launch hosted version app shinyapps.io (click link). Additionally option run app locally access data current working environment. , open R (RStudio similar), run following code install latest version freesearcheR launch app: small note, standalone Windows app version drawing board well, time frame available.","code":"require(\"pak\") pak::pak(\"agdamsbo/freesearcheR\") library(freesearcheR) freesearcheR::launch_freesearcheR()"},{"path":"https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html","id":"importing-data","dir":"Articles","previous_headings":"Getting started with freesearcheR","what":"Importing data","title":"freesearcheR","text":"app “Import”, three options available importing data: file upload, REDCap server export local sample data. choosing data source, can set threshold filter data completenes manually specify variables include analyses.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html","id":"file-upload","dir":"Articles","previous_headings":"Getting started with freesearcheR > Importing data","what":"File upload","title":"freesearcheR","text":"Currently several data file formats supported easy import (csv, txt, xls(x), ods, rds, dta). importing workbooks (xls(x) ods), prompted specify sheet(s) import. choosing multiple sheets, automatically merged common variable(s), please make sure key variables correctly named identically.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html","id":"visualise","dir":"Articles","previous_headings":"Getting started with freesearcheR","what":"Visualise","title":"freesearcheR","text":"nice table possible plots, description data options","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). freesearcheR: Browser Based Data Analysis. R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/, https://github.com/agdamsbo/freesearcheR.","code":"@Manual{,   title = {freesearcheR: Browser Based Data Analysis},   author = {Andreas Gammelgaard Damsbo},   year = {2025},   note = {R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/},   url = {https://github.com/agdamsbo/freesearcheR}, }"},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"freesearcher","dir":"","previous_headings":"","what":"Browser Based Data Analysis","title":"Browser Based Data Analysis","text":"package backbone freesearcheR, free open-source browser based data exploration analysis tool clinicians researchers publication ready output. package freesearcheR-tool part larger initiative democratize health data analysis remove barriers clinicians engage health research. freesearcheR-tool online accessible : link app freely hosted shinyapps.io. feedback welcome can shared GitHub issue. Initiatives funding continued development tool surrounding initiatives ongoing.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"install-locally","dir":"","previous_headings":"","what":"Install locally","title":"Browser Based Data Analysis","text":"freesearcheR-tool can also launched locally. data.frame available global environment accessible interface.","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/freesearcheR\") library(freesearcheR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) shiny_freesearcheR()"},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Browser Based Data Analysis","text":"Please note freesearcheR project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |>   overview_vars() |>   toastui::datagrid() |>   add_class_icon()      {\"x\":{\"nrow\":11,\"ncol\":7,\"data\":[[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\",\"numeric\"],[\"mpg\",\"cyl\",\"disp\",\"hp\",\"drat\",\"wt\",\"qsec\",\"vs\",\"am\",\"gear\",\"carb\"],[0,0,0,0,0,0,0,0,0,0,0],[1,1,1,1,1,1,1,1,1,1,1],[25,3,27,22,22,29,30,2,2,3,6],[[21,21,22.8,21.4,18.7,18.1,14.3,24.4,22.8,19.2,17.8,16.4,17.3,15.2,10.4,10.4,14.7,32.4,30.4,33.9,21.5,15.5,15.2,13.3,19.2,27.3,26,30.4,15.8,19.7,15,21.4],[6,6,4,6,8,6,8,4,4,6,6,8,8,8,8,8,8,4,4,4,4,8,8,8,8,4,4,4,8,6,8,4],[160,160,108,258,360,225,360,146.7,140.8,167.6,167.6,275.8,275.8,275.8,472,460,440,78.7,75.7,71.09999999999999,120.1,318,304,350,400,79,120.3,95.09999999999999,351,145,301,121],[110,110,93,110,175,105,245,62,95,123,123,180,180,180,205,215,230,66,52,65,97,150,150,245,175,66,91,113,264,175,335,109],[3.9,3.9,3.85,3.08,3.15,2.76,3.21,3.69,3.92,3.92,3.92,3.07,3.07,3.07,2.93,3,3.23,4.08,4.93,4.22,3.7,2.76,3.15,3.73,3.08,4.08,4.43,3.77,4.22,3.62,3.54,4.11],[2.62,2.875,2.32,3.215,3.44,3.46,3.57,3.19,3.15,3.44,3.44,4.07,3.73,3.78,5.25,5.424,5.345,2.2,1.615,1.835,2.465,3.52,3.435,3.84,3.845,1.935,2.14,1.513,3.17,2.77,3.57,2.78],[16.46,17.02,18.61,19.44,17.02,20.22,15.84,20,22.9,18.3,18.9,17.4,17.6,18,17.98,17.82,17.42,19.47,18.52,19.9,20.01,16.87,17.3,15.41,17.05,18.9,16.7,16.9,14.5,15.5,14.6,18.6],[0,0,1,1,0,1,0,1,1,1,1,0,0,0,0,0,0,1,1,1,1,0,0,0,0,1,0,1,0,0,0,1],[1,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,1,0,0,0,0,0,1,1,1,1,1,1,1],[4,4,4,3,3,3,3,4,4,4,4,3,3,3,3,3,3,4,4,4,3,3,3,3,3,4,5,5,5,5,5,4],[4,4,1,1,2,1,4,2,2,4,4,3,3,3,4,4,4,1,2,1,1,2,2,4,2,1,2,2,4,6,8,2]]],\"colnames\":[\"class\",\"type\",\"name\",\"n_missing\",\"p_complete\",\"n_unique\",\"vals\"],\"options\":{\"columns\":[{\"header\":\"class\",\"name\":\"class\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"},\"type\":\"datagrid.renderer.format\",\"options\":{\"formatted\":[\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\",\"<i class=\\\"fas fa-calculator\\\" role=\\\"presentation\\\" aria-label=\\\"calculator icon\\\"><\\/i>\"]}},\"width\":60},{\"header\":\"type\",\"name\":\"type\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"name\",\"name\":\"name\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_missing\",\"name\":\"n_missing\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"p_complete\",\"name\":\"p_complete\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"n_unique\",\"name\":\"n_unique\",\"sortable\":true,\"align\":\"right\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}},{\"header\":\"vals\",\"name\":\"vals\",\"sortable\":true,\"align\":\"left\",\"whiteSpace\":\"normal\",\"renderer\":{\"styles\":{\"wordBreak\":\"normal\"}}}],\"bodyHeight\":\"fitToParent\",\"draggable\":false,\"usageStatistics\":false,\"contextMenu\":null,\"rowHeight\":\"auto\"},\"theme\":\"clean\",\"themeOptions\":{\"cell\":{\"normal\":{\"showHorizontalBorder\":true}}},\"language\":\"en\",\"languageOptions\":[],\"filters\":false,\"rowAttributes\":[],\"validationInput\":false,\"dataAsInput\":false,\"dragInput\":false},\"evals\":[\"options.columns.0.renderer.type\"],\"jsHooks\":[]}"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":null,"dir":"Reference","previous_headings":"","what":"Add sparkline to datagrid — add_sparkline","title":"Add sparkline to datagrid — add_sparkline","text":"Add sparkline datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"add_sparkline(   grid,   column = \"vals\",   color.main = \"#2a8484\",   color.sec = \"#84EF84\" )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add sparkline to datagrid — add_sparkline","text":"grid grid column clumn transform","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add sparkline to datagrid — add_sparkline","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_sparkline.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Add sparkline to datagrid — add_sparkline","text":"","code":"grid <- mtcars |>   default_parsing() |>   overview_vars() |>   toastui::datagrid() |>   add_sparkline() grid      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theme based on unity — custom_theme","title":"Custom theme based on unity — custom_theme","text":"Custom theme based unity","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/custom_theme.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Custom theme based on unity — custom_theme","text":"","code":"custom_theme(   ...,   version = 5,   primary = \"#1E4A8F\",   secondary = \"#FF6F61\",   bootswatch = \"united\",   base_font = bslib::font_google(\"Montserrat\"),   heading_font = bslib::font_google(\"Public Sans\", wght = \"700\"),   code_font = bslib::font_google(\"Open Sans\") )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/custom_theme.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Custom theme based on unity — custom_theme","text":"... everything passed bslib::bs_theme()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/custom_theme.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Custom theme based on unity — custom_theme","text":"theme list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Convert Numeric to Factor — cut-variable","title":"Module to Convert Numeric to Factor — cut-variable","text":"module contain interface cut numeric several intervals.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Convert Numeric to Factor — cut-variable","text":"","code":"cut_variable_ui(id)  cut_variable_server(id, data_r = reactive(NULL))  modal_cut_variable(   id,   title = i18n(\"Convert Numeric to Factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_cut_variable(   id,   title = i18n(\"Convert Numeric to Factor\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Convert Numeric to Factor — cut-variable","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Convert Numeric to Factor — cut-variable","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended cutting function — cut.hms","title":"Extended cutting function — cut.hms","text":"Extended cutting function","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended cutting function — cut.hms","text":"","code":"# S3 method for class 'hms' cut(x, breaks, ...)  # S3 method for class 'POSIXt' cut(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'POSIXct' cut(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'Date' cut(x, breaks, start.on.monday = TRUE, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended cutting function — cut.hms","text":"x object inheriting class \"POSIXct\" ... passed ","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended cutting function — cut.hms","text":"factor","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended cutting function — cut.hms","text":"","code":"readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(2) #> [1] 01:00:20 01:00:20 01:00:20 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:20 #> 03:01:20 #> 21:20:20 #> Levels: 01:00:20 03:01:20 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(\"min\") #> [1] 01:00:00 03:00:00 01:20:00 08:20:00 21:20:00 03:02:00 #> attr(,\"brks\") #> 01:00:00 #> 01:20:00 #> 03:00:00 #> 03:02:00 #> 08:20:00 #> 21:20:00 #> 21:20:20 #> Levels: 01:00:00 01:20:00 03:00:00 03:02:00 08:20:00 21:20:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(breaks = \"hour\") #> [1] 01:00:00 03:00:00 01:00:00 08:00:00 21:00:00 03:00:00 #> attr(,\"brks\") #> 01:00:00 #> 03:00:00 #> 08:00:00 #> 21:00:00 #> 21:20:20 #> Levels: 01:00:00 03:00:00 08:00:00 21:00:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(breaks = hms::as_hms(c(\"01:00:00\", \"03:01:20\", \"9:20:20\"))) #> [1] 01:00:00 01:00:00 01:00:00 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:00 #> 03:01:20 #> 09:20:20 #> Levels: 01:00:00 03:01:20 d_t <- readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) f <- d_t |> cut(2) readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) |> cut(breaks = lubridate::as_datetime(c(hms::as_hms(levels(f)), hms::as_hms(max(d_t, na.rm = TRUE) + 1))), right = FALSE) #> Warning: tz(): Don't know how to compute timezone for object of class hms/difftime; returning \"UTC\". #> [1] 01:00:20 02:10:20 01:00:20 02:10:20 <NA>     #> attr(,\"brks\") #> 01:00:20 #> 02:10:20 #> 03:02:21 #> Levels: 01:00:20 02:10:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(2) #> [1] 1992-02-01 01:00:20 1992-02-01 01:00:20 1992-02-01 01:00:20 #> [4] 1992-02-01 01:00:20 1999-02-01 21:20:20 1992-02-01 01:00:20 #> Levels: 1992-02-01 01:00:20 1999-02-01 21:20:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(breaks=\"weekday\") #> Error in cut.POSIXt(readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\",     \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\",     \"1992-12-01 03:02:20\")), breaks = \"weekday\"): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(breaks=\"month_only\") #> Error in cut.POSIXt(readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\",     \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\",     \"1992-12-01 03:02:20\")), breaks = \"month_only\"): invalid specification of 'breaks' as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(2) #> [1] 1992-02-01 1992-02-01 1992-02-01 1992-02-01 1999-02-01 1992-02-01 #> Levels: 1992-02-01 1999-02-01 as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(breaks=\"weekday\") #> Error in cut.Date(as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\",     \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\",     \"1992-12-01 03:02:20\")), breaks = \"weekday\"): invalid specification of 'breaks'"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-correlations","title":"Data correlations evaluation module — data-correlations","text":"Data correlations evaluation module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-correlations","text":"","code":"data_correlations_ui(id, ...)  data_correlations_server(id, data, include.class = NULL, cutoff = 0.7, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-correlations","text":"id Module id. (Use 'ns(\"id\")') ... arguments passed toastui::datagrid data data color.main main color color.sec secondary color","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-correlations","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-import.html","id":null,"dir":"Reference","previous_headings":"","what":"Test app for the data-import module — data_import_demo_app","title":"Test app for the data-import module — data_import_demo_app","text":"Test app data-import module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-import.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test app for the data-import module — data_import_demo_app","text":"","code":"data_import_demo_app()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-import.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test app for the data-import module — data_import_demo_app","text":"","code":"if (FALSE) { # \\dontrun{ data_import_demo_app() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-plots","title":"Data correlations evaluation module — data-plots","text":"Data correlations evaluation module Wrapper create plot based provided type Nice horizontal stacked bars (Grotta bars) Plot nice ridge plot Readying data sankey plot Beautiful sankey plot option split tertiary group Beautiful violin plot Beatiful violin plot","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-plots","text":"","code":"data_visuals_ui(id, tab_title = \"Plots\", ...)  data_visuals_server(id, data, ...)  create_plot(data, type, x, y, z = NULL, ...)  plot_hbars(data, x, y, z = NULL)  plot_ridge(data, x, y, z = NULL, ...)  sankey_ready(data, x, y, numbers = \"count\", ...)  plot_sankey(data, x, y, z = NULL, color.group = \"x\", colors = NULL)  plot_scatter(data, x, y, z = NULL)  plot_violin(data, x, y, z = NULL)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-plots","text":"id Module id. (Use 'ns(\"id\")') ... ignored now data data.frame type plot type (derived possible_plots() matches custom function) x primary variable y secondary variable z tertiary variable","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-plots","text":"Shiny ui module shiny server module ggplot2 object ggplot2 object ggplot2 object data.frame ggplot2 object ggplot2 object ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data correlations evaluation module — data-plots","text":"","code":"create_plot(mtcars, \"plot_violin\", \"mpg\", \"cyl\") #> Error in if (!z %in% names(data)) {    z <- NULL}: argument is of length zero mtcars |> plot_hbars(x = \"carb\", y = \"cyl\") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |> plot_hbars(x = \"carb\", y = NULL) #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |>   default_parsing() |>   plot_ridge(x = \"mpg\", y = \"cyl\") #> Picking joint bandwidth of 1.38  mtcars |> plot_ridge(x = \"mpg\", y = \"cyl\", z = \"gear\") #> Picking joint bandwidth of 1.52 #> Warning: The following aesthetics were dropped during statistical transformation: y and #> fill. #> ℹ This can happen when ggplot fails to infer the correct grouping structure in #>   the data. #> ℹ Did you forget to specify a `group` aesthetic or to convert a numerical #>   variable into a factor? #> Error in ggridges::geom_density_ridges(): Problem while setting up geom. #> ℹ Error occurred in the 1st layer. #> Caused by error in `compute_geom_1()`: #> ! `geom_density_ridges()` requires the following missing aesthetics: y. ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = sample(c(letters[1:4], NA), 100, TRUE, prob = c(rep(.23, 4), .08))) ds |> sankey_ready(\"first\", \"last\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx          ly          #>    <fct> <fct> <int>  <int>  <int> <fct>       <fct>       #>  1 c     c         5     28     15 \"c\\n(n=28)\" \"c\\n(n=15)\" #>  2 c     a         7     28     32 \"c\\n(n=28)\" \"a\\n(n=32)\" #>  3 c     b         6     28     26 \"c\\n(n=28)\" \"b\\n(n=26)\" #>  4 c     d         6     28     17 \"c\\n(n=28)\" \"d\\n(n=17)\" #>  5 c     NA        4     28     10 \"c\\n(n=28)\"  NA         #>  6 a     c         6     24     15 \"a\\n(n=24)\" \"c\\n(n=15)\" #>  7 a     a         9     24     32 \"a\\n(n=24)\" \"a\\n(n=32)\" #>  8 a     b         6     24     26 \"a\\n(n=24)\" \"b\\n(n=26)\" #>  9 a     d         1     24     17 \"a\\n(n=24)\" \"d\\n(n=17)\" #> 10 a     NA        2     24     10 \"a\\n(n=24)\"  NA         #> 11 b     c         4     20     15 \"b\\n(n=20)\" \"c\\n(n=15)\" #> 12 b     a         8     20     32 \"b\\n(n=20)\" \"a\\n(n=32)\" #> 13 b     b         5     20     26 \"b\\n(n=20)\" \"b\\n(n=26)\" #> 14 b     d         2     20     17 \"b\\n(n=20)\" \"d\\n(n=17)\" #> 15 b     NA        1     20     10 \"b\\n(n=20)\"  NA         #> 16 d     a         8     28     32 \"d\\n(n=28)\" \"a\\n(n=32)\" #> 17 d     b         9     28     26 \"d\\n(n=28)\" \"b\\n(n=26)\" #> 18 d     d         8     28     17 \"d\\n(n=28)\" \"d\\n(n=17)\" #> 19 d     NA        3     28     10 \"d\\n(n=28)\"  NA         ds |> sankey_ready(\"first\", \"last\", numbers = \"percentage\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx         ly         #>    <fct> <fct> <int>  <int>  <int> <fct>      <fct>      #>  1 c     c         5     28     15 \"c\\n(28%)\" \"c\\n(15%)\" #>  2 c     a         7     28     32 \"c\\n(28%)\" \"a\\n(32%)\" #>  3 c     b         6     28     26 \"c\\n(28%)\" \"b\\n(26%)\" #>  4 c     d         6     28     17 \"c\\n(28%)\" \"d\\n(17%)\" #>  5 c     NA        4     28     10 \"c\\n(28%)\"  NA        #>  6 a     c         6     24     15 \"a\\n(24%)\" \"c\\n(15%)\" #>  7 a     a         9     24     32 \"a\\n(24%)\" \"a\\n(32%)\" #>  8 a     b         6     24     26 \"a\\n(24%)\" \"b\\n(26%)\" #>  9 a     d         1     24     17 \"a\\n(24%)\" \"d\\n(17%)\" #> 10 a     NA        2     24     10 \"a\\n(24%)\"  NA        #> 11 b     c         4     20     15 \"b\\n(20%)\" \"c\\n(15%)\" #> 12 b     a         8     20     32 \"b\\n(20%)\" \"a\\n(32%)\" #> 13 b     b         5     20     26 \"b\\n(20%)\" \"b\\n(26%)\" #> 14 b     d         2     20     17 \"b\\n(20%)\" \"d\\n(17%)\" #> 15 b     NA        1     20     10 \"b\\n(20%)\"  NA        #> 16 d     a         8     28     32 \"d\\n(28%)\" \"a\\n(32%)\" #> 17 d     b         9     28     26 \"d\\n(28%)\" \"b\\n(26%)\" #> 18 d     d         8     28     17 \"d\\n(28%)\" \"d\\n(17%)\" #> 19 d     NA        3     28     10 \"d\\n(28%)\"  NA        data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   sankey_ready(\"first\", \"last\") #> # A tibble: 8 × 7 #>   first last      n gx.sum gy.sum lx          ly              #>   <fct> <fct> <int>  <int>  <int> <fct>       <fct>           #> 1 a     FALSE    21     29     61 \"a\\n(n=29)\" \"FALSE\\n(n=61)\" #> 2 a     TRUE      8     29     39 \"a\\n(n=29)\" \"TRUE\\n(n=39)\"  #> 3 d     FALSE    12     22     61 \"d\\n(n=22)\" \"FALSE\\n(n=61)\" #> 4 d     TRUE     10     22     39 \"d\\n(n=22)\" \"TRUE\\n(n=39)\"  #> 5 b     FALSE    13     26     61 \"b\\n(n=26)\" \"FALSE\\n(n=61)\" #> 6 b     TRUE     13     26     39 \"b\\n(n=26)\" \"TRUE\\n(n=39)\"  #> 7 c     FALSE    15     23     61 \"c\\n(n=23)\" \"FALSE\\n(n=61)\" #> 8 c     TRUE      8     23     39 \"c\\n(n=23)\" \"TRUE\\n(n=39)\"  ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey(\"first\", \"last\") #> Loading required package: ggplot2  ds |> plot_sankey(\"first\", \"last\", color.group = \"y\")  ds |> plot_sankey(\"first\", \"last\", z = \"g\", color.group = \"y\")  mtcars |> plot_scatter(x = \"mpg\", y = \"wt\")  mtcars |> plot_violin(x = \"mpg\", y = \"cyl\", z = \"gear\") #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 1: `cyl = 4`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 1: `cyl = 4`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 2: `cyl = 6`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 2: `cyl = 6`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Removed 2 rows containing non-finite outside the scale range #> (`stat_ydensity()`). #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_point()`). #> Warning: Removed 4 rows containing non-finite outside the scale range #> (`stat_ydensity()`). #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_point()`). #> Warning: Removed 1 row containing non-finite outside the scale range #> (`stat_ydensity()`). #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_point()`)."},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":null,"dir":"Reference","previous_headings":"","what":"Data summary module — data-summary","title":"Data summary module — data-summary","text":"Data summary module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data summary module — data-summary","text":"","code":"data_summary_ui(id)  data_summary_server(id, data, color.main, color.sec, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data summary module — data-summary","text":"id Module id. (Use 'ns(\"id\")') data data color.main main color color.sec secondary color ... arguments passed toastui::datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data summary module — data-summary","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_format_arguments.html","id":null,"dir":"Reference","previous_headings":"","what":"Defaults qmd formats — default_format_arguments","title":"Defaults qmd formats — default_format_arguments","text":"Defaults qmd formats","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_format_arguments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Defaults qmd formats — default_format_arguments","text":"","code":"default_format_arguments()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_format_arguments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Defaults qmd formats — default_format_arguments","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":null,"dir":"Reference","previous_headings":"","what":"Default data parsing — default_parsing","title":"Default data parsing — default_parsing","text":"Default data parsing","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Default data parsing — default_parsing","text":"","code":"default_parsing(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Default data parsing — default_parsing","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Default data parsing — default_parsing","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Default data parsing — default_parsing","text":"","code":"mtcars |> str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ... mtcars |>   default_parsing() |>   str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : Factor w/ 3 levels \"4\",\"6\",\"8\": 2 2 1 2 3 2 3 1 1 2 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : Factor w/ 2 levels \"0\",\"1\": 1 1 2 2 1 2 1 2 2 2 ... #>  $ am  : Factor w/ 2 levels \"0\",\"1\": 2 2 2 1 1 1 1 1 1 1 ... #>  $ gear: Factor w/ 3 levels \"3\",\"4\",\"5\": 2 2 2 1 1 1 1 2 2 2 ... #>  $ carb: Factor w/ 6 levels \"1\",\"2\",\"3\",\"4\",..: 4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop empty events from REDCap export — drop_empty_event","title":"Drop empty events from REDCap export — drop_empty_event","text":"Drop empty events REDCap export","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop empty events from REDCap export — drop_empty_event","text":"","code":"drop_empty_event(data, event = \"redcap_event_name\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop empty events from REDCap export — drop_empty_event","text":"data data event \"redcap_event_name\", \"redcap_repeat_instrument\" \"redcap_repeat_instance\"","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Drop empty events from REDCap export — drop_empty_event","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/factorize.html","id":null,"dir":"Reference","previous_headings":"","what":"Factorize variables in data.frame — factorize","title":"Factorize variables in data.frame — factorize","text":"Factorize variables data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/factorize.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Factorize variables in data.frame — factorize","text":"","code":"factorize(data, vars)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/factorize.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Factorize variables in data.frame — factorize","text":"data data.frame vars variables force factorize","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/factorize.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Factorize variables in data.frame — factorize","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/file_export.html","id":null,"dir":"Reference","previous_headings":"","what":"Title — file_export","title":"Title — file_export","text":"Title","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/file_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Title — file_export","text":"","code":"file_export(data, output.format = c(\"df\", \"teal\", \"list\"), filename, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/file_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Title — file_export","text":"data data output.format output filename filename ... passed ","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/file_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Title — file_export","text":"data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":null,"dir":"Reference","previous_headings":"","what":"Merges list of named arguments for qmd header generation — format_writer","title":"Merges list of named arguments for qmd header generation — format_writer","text":"Merges list named arguments qmd header generation","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merges list of named arguments for qmd header generation — format_writer","text":"","code":"format_writer(data, name)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merges list of named arguments for qmd header generation — format_writer","text":"data vector name name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merges list of named arguments for qmd header generation — format_writer","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_fun_options","title":"Get the function options based on the selected function description — get_fun_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"get_fun_options(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_fun_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_fun_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_functions(design = \"cross-sectional\") |>   (\\(.x){     .x[[1]]   })() |>   get_fun_options() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Print label, and if missing print variable name — get_label","title":"Print label, and if missing print variable name — get_label","text":"Print label, missing print variable name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Print label, and if missing print variable name — get_label","text":"","code":"get_label(data, var = NULL)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Print label, and if missing print variable name — get_label","text":"data vector data frame var variable name. Optional.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Print label, and if missing print variable name — get_label","text":"character string","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Print label, and if missing print variable name — get_label","text":"","code":"mtcars |> get_label(var = \"mpg\") #> [1] \"mpg\" mtcars |> get_label() #> [1] \"mtcars\" mtcars$mpg |> get_label() #> [1] \"mtcars$mpg\" gtsummary::trial |> get_label(var = \"trt\") #> [1] \"Chemotherapy Treatment\" 1:10 |> get_label() #> [1] \"1:10\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_plot_options","title":"Get the function options based on the selected function description — get_plot_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"get_plot_options(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_plot_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_plot_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"ls <- mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_plots() |>   (\\(.x){     .x[[1]]   })() |>   get_plot_options()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function follows idea comment: https://stackoverflow.com/questions/38983179/-call--function--r-without-loading--package","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(x)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"x function function name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function character vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(\"stats::lm\") #> function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> } #> <bytecode: 0x56354d94da30> #> <environment: namespace:stats>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting export objects — gg_theme_export","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"GGplot default theme plotting export objects","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"","code":"gg_theme_export()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting in Shiny — gg_theme_shiny","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"GGplot default theme plotting Shiny","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"","code":"gg_theme_shiny()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/ggeulerr.html","id":null,"dir":"Reference","previous_headings":"","what":"Area proportional venn diagrams — ggeulerr","title":"Area proportional venn diagrams — ggeulerr","text":"slightly modified https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded functions uses eulerr::euler plot area proportional venn diagramms plots using ggplot2","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/ggeulerr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Area proportional venn diagrams — ggeulerr","text":"","code":"ggeulerr(combinations, show_quantities = TRUE, show_labels = TRUE, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/ggeulerr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Area proportional venn diagrams — ggeulerr","text":"combinations set relationships named numeric vector, matrix, data.frame(See eulerr::euler) show_quantities whether show number intersecting elements show_labels whether show set names ... arguments passed eulerr::euler","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":null,"dir":"Reference","previous_headings":"","what":"Matches pattern to vector based on match type — grepl_fix","title":"Matches pattern to vector based on match type — grepl_fix","text":"Matches pattern vector based match type","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"grepl_fix(data, pattern, type = c(\"prefix\", \"infix\", \"suffix\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Matches pattern to vector based on match type — grepl_fix","text":"data vector pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\".","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Matches pattern to vector based on match type — grepl_fix","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"c(\"id\", \"age\", \"weight_0\", \"weight_1\") |> grepl_fix(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #> [1] FALSE FALSE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to ease data file import — import-file-type","title":"Wrapper to ease data file import — import-file-type","text":"Wrapper ease data file import","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to ease data file import — import-file-type","text":"","code":"import_delim(file, skip, encoding, na.strings)  import_xls(file, sheet, skip, na.strings)  import_ods(file, sheet, skip, na.strings)  import_dta(file)  import_rds(file)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to ease data file import — import-file-type","text":"file path file skip number row skip encoding file encoding na.strings character(s) interpret missing values. sheet Excel files, sheet read","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to ease data file import — import-file-type","text":"data.frame data.frame data.frame data.frame data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file.html","id":null,"dir":"Reference","previous_headings":"","what":"Import data from a file — import-file","title":"Import data from a file — import-file","text":"Let user upload file import data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Import data from a file — import-file","text":"","code":"import_file_ui(   id,   title = \"\",   preview_data = TRUE,   file_extensions = c(\".csv\", \".txt\", \".xls\", \".xlsx\", \".rds\", \".fst\", \".sas7bdat\",     \".sav\"),   layout_params = c(\"dropdown\", \"inline\") )  import_file_server(   id,   btn_show_data = TRUE,   show_data_in = c(\"popup\", \"modal\"),   trigger_return = c(\"button\", \"change\"),   return_class = c(\"data.frame\", \"data.table\", \"tbl_df\", \"raw\"),   reset = reactive(NULL) )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Import data from a file — import-file","text":"preview_data Show preview data file input. file_extensions File extensions accepted shiny::fileInput(), can also MIME type. layout_params display import parameters : dropdown button inline file input.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Test app for the import_file module — import_file_demo_app","title":"Test app for the import_file module — import_file_demo_app","text":"Test app import_file module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"import_file_demo_app()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"if (FALSE) { # \\dontrun{ import_file_demo_app() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":null,"dir":"Reference","previous_headings":"","what":"Split vector by an index and embed addition — index_embed","title":"Split vector by an index and embed addition — index_embed","text":"Split vector index embed addition","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split vector by an index and embed addition — index_embed","text":"","code":"index_embed(data, index, add = NULL)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split vector by an index and embed addition — index_embed","text":"data vector index split index add addition","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split vector by an index and embed addition — index_embed","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":null,"dir":"Reference","previous_headings":"","what":"Test class — is_any_class","title":"Test class — is_any_class","text":"Test class","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test class — is_any_class","text":"","code":"is_any_class(data, class.vec)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test class — is_any_class","text":"data data class.vec vector class names test","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test class — is_any_class","text":"factor","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test class — is_any_class","text":"","code":"if (FALSE) { # \\dontrun{ vapply(REDCapCAST::redcapcast_data, \\(.x){   is_any_class(.x, c(\"hms\", \"Date\", \"POSIXct\", \"POSIXt\")) }, logical(1)) } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"Checks elements vector equally spaced indication ID","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"is_consecutive(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"logical","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"1:10 |> is_consecutive() #> [1] TRUE sample(1:100,40) |> is_consecutive() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":null,"dir":"Reference","previous_headings":"","what":"Test is date/datetime/time — is_datetime","title":"Test is date/datetime/time — is_datetime","text":"Test date/datetime/time","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test is date/datetime/time — is_datetime","text":"","code":"is_datetime(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test is date/datetime/time — is_datetime","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test is date/datetime/time — is_datetime","text":"factor","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test is date/datetime/time — is_datetime","text":"","code":"vapply(REDCapCAST::redcapcast_data, is_datetime, logical(1)) #>                    record_id            redcap_event_name  #>                        FALSE                        FALSE  #>     redcap_repeat_instrument       redcap_repeat_instance  #>                        FALSE                        FALSE  #>                          cpr                    inclusion  #>                        FALSE                         TRUE  #>               inclusion_time                          dob  #>                         TRUE                         TRUE  #>                          age                  age_integer  #>                        FALSE                        FALSE  #>                          sex                 cohabitation  #>                        FALSE                        FALSE  #>                 hypertension                     diabetes  #>                        FALSE                        FALSE  #>                       region baseline_data_start_complete  #>                        FALSE                        FALSE  #>                 mrs_assessed                     mrs_date  #>                        FALSE                         TRUE  #>                    mrs_score                 mrs_complete  #>                        FALSE                        FALSE  #>                      con_mrs                     con_calc  #>                        FALSE                        FALSE  #>           consensus_complete               event_datetime  #>                        FALSE                         TRUE  #>                    event_age                   event_type  #>                        FALSE                        FALSE  #>           new_event_complete  #>                        FALSE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if url is valid format for REDCap API — is_valid_redcap_url","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"Test url valid format REDCap API","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"is_valid_redcap_url(url)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"url url","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"logical","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"url <- c(   \"www.example.com\",   \"redcap.your.inst/api/\",   \"https://redcap.your.inst/api/\",   \"https://your.inst/redcap/api/\",   \"https://www.your.inst/redcap/api/\" ) is_valid_redcap_url(url) #> [1] FALSE FALSE  TRUE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate REDCap token — is_valid_token","title":"Validate REDCap token — is_valid_token","text":"Validate REDCap token","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate REDCap token — is_valid_token","text":"","code":"is_valid_token(token, pattern_env = NULL, nchar = 32)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate REDCap token — is_valid_token","text":"token token pattern_env pattern","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate REDCap token — is_valid_token","text":"logical","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validate REDCap token — is_valid_token","text":"","code":"token <- paste(sample(c(1:9, LETTERS[1:6]), 32, TRUE), collapse = \"\") is_valid_token(token) #> [1] TRUE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_freesearcheR.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily launch the freesearcheR app — launch_freesearcheR","title":"Easily launch the freesearcheR app — launch_freesearcheR","text":"Easily launch freesearcheR app","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_freesearcheR.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily launch the freesearcheR app — launch_freesearcheR","text":"","code":"launch_freesearcheR(...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_freesearcheR.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily launch the freesearcheR app — launch_freesearcheR","text":"... passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_freesearcheR.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily launch the freesearcheR app — launch_freesearcheR","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":null,"dir":"Reference","previous_headings":"","what":"Line breaking at given number of characters for nicely plotting labels — line_break","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"Line breaking given number characters nicely plotting labels","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"line_break(data, lineLength = 20, fixed = FALSE)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"data string lineLength maximum line length fixed flag force split exactly value given lineLength. Default FALSE, splitting spaces.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"character string","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"\"Lorem ipsum... you know the routine\" |> line_break() #> [1] \"Lorem ipsum... you\\nknow the routine\" paste(sample(letters[1:10], 100, TRUE), collapse = \"\") |> line_break(fixed = TRUE) #> [1] \"jdhegaaegchcffhcedhcgghhdifbfjheabacfibfhecjigehjdgdjfaffbfhfcghgefddidiihdhbgedgdgaahcjicggefhgfjhb\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":null,"dir":"Reference","previous_headings":"","what":"Shiny UI module to load a data file — m_datafileUI","title":"Shiny UI module to load a data file — m_datafileUI","text":"Shiny UI module load data file","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shiny UI module to load a data file — m_datafileUI","text":"","code":"m_datafileUI(id)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shiny UI module to load a data file — m_datafileUI","text":"id id","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shiny UI module to load a data file — m_datafileUI","text":"shiny UI","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"Wrapper pivot gtsummary table data long plotting","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"","code":"merge_long(list, model.names)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list custom regression models list model.names names models include","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":null,"dir":"Reference","previous_headings":"","what":"Get missingsness fraction — missing_fraction","title":"Get missingsness fraction — missing_fraction","text":"Get missingsness fraction","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get missingsness fraction — missing_fraction","text":"","code":"missing_fraction(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get missingsness fraction — missing_fraction","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get missingsness fraction — missing_fraction","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get missingsness fraction — missing_fraction","text":"","code":"c(NA,1:10,rep(NA,3)) |> missing_fraction() #> [1] 0.2857143"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to modify quarto file to render specific formats — modify_qmd","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"Wrapper modify quarto file render specific formats","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"","code":"modify_qmd(file, format)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"file filename format desired output","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"none","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":null,"dir":"Reference","previous_headings":"","what":"Outcome data type assessment — outcome_type","title":"Outcome data type assessment — outcome_type","text":"Outcome data type assessment","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Outcome data type assessment — outcome_type","text":"","code":"outcome_type(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Outcome data type assessment — outcome_type","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Outcome data type assessment — outcome_type","text":"outcome type","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Outcome data type assessment — outcome_type","text":"","code":"mtcars |>   default_parsing() |>   lapply(outcome_type) #> $mpg #> [1] \"continuous\" #>  #> $cyl #> [1] \"ordinal\" #>  #> $disp #> [1] \"continuous\" #>  #> $hp #> [1] \"continuous\" #>  #> $drat #> [1] \"continuous\" #>  #> $wt #> [1] \"continuous\" #>  #> $qsec #> [1] \"continuous\" #>  #> $vs #> [1] \"dichotomous\" #>  #> $am #> [1] \"dichotomous\" #>  #> $gear #> [1] \"ordinal\" #>  #> $carb #> [1] \"ordinal\" #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a data overview data.frame ready for sparklines — overview_vars","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"Create data overview data.frame ready sparklines","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"overview_vars(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"mtcars |> overview_vars() #> # A tibble: 11 × 7 #>    class   type    name  n_missing p_complete n_unique vals         #>    <chr>   <chr>   <chr>     <dbl>      <dbl>    <int> <named list> #>  1 numeric numeric mpg           0          1       25 <dbl [32]>   #>  2 numeric numeric cyl           0          1        3 <dbl [32]>   #>  3 numeric numeric disp          0          1       27 <dbl [32]>   #>  4 numeric numeric hp            0          1       22 <dbl [32]>   #>  5 numeric numeric drat          0          1       22 <dbl [32]>   #>  6 numeric numeric wt            0          1       29 <dbl [32]>   #>  7 numeric numeric qsec          0          1       30 <dbl [32]>   #>  8 numeric numeric vs            0          1        2 <dbl [32]>   #>  9 numeric numeric am            0          1        2 <dbl [32]>   #> 10 numeric numeric gear          0          1        3 <dbl [32]>   #> 11 numeric numeric carb          0          1        6 <dbl [32]>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":null,"dir":"Reference","previous_headings":"","what":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"Regression coef plot gtsummary. Slightly modified pass arguments","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"# S3 method for class 'tbl_regression' plot(x, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"x (tbl_regression, tbl_uvregression) 'tbl_regression' 'tbl_uvregression' object ... arguments passed ggstats::ggcoef_plot(...)","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"if (FALSE) { # \\dontrun{ mod <- lm(mpg ~ ., mtcars) p <- mod |>   gtsummary::tbl_regression() |>   plot(colour = \"variable\") } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot euler diagrams — plot_euler","title":"Easily plot euler diagrams — plot_euler","text":"Easily plot euler diagrams","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot euler diagrams — plot_euler","text":"","code":"plot_euler(data, x, y, z = NULL, seed = 2103)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily plot euler diagrams — plot_euler","text":"data data x name main variable y name secondary variables z grouping variable seed seed","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot euler diagrams — plot_euler","text":"patchwork object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot euler diagrams — plot_euler","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler(\"A\", c(\"B\", \"C\"), \"D\", seed = 4)  mtcars |> plot_euler(\"vs\", \"am\", seed = 1) #> [[1]]  #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot single euler diagrams — plot_euler_single","title":"Easily plot single euler diagrams — plot_euler_single","text":"Easily plot single euler diagrams","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"plot_euler_single(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot single euler diagrams — plot_euler_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler_single()  mtcars[c(\"vs\", \"am\")] |> plot_euler_single()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Beautiful sankey plot — plot_sankey_single","title":"Beautiful sankey plot — plot_sankey_single","text":"Beautiful sankey plot","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"plot_sankey_single(data, x, y, color.group = c(\"x\", \"y\"), colors = NULL, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Beautiful sankey plot — plot_sankey_single","text":"color.group set group colour . \"x\" \"y\". colors optinally specify colors. Give NA color, color level primary group color level secondary group. ... passed sankey_ready()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Beautiful sankey plot — plot_sankey_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey_single(\"first\", \"last\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  ds |> plot_sankey_single(\"first\", \"last\", color.group = \"y\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   plot_sankey_single(\"first\", \"last\", color.group = \"x\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_functions","title":"Get possible regression models — possible_functions","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_functions","text":"","code":"possible_functions(data, design = c(\"cross-sectional\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_functions","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_functions","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_functions","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\"  mtcars |>   default_parsing() |>   dplyr::select(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_plots","title":"Get possible regression models — possible_plots","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_plots","text":"","code":"possible_plots(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_plots","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_plots","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_plots","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_plots() #> [1] \"Stacked horizontal bars\" \"Violin plot\"             #> [3] \"Sankey plot\"              mtcars |>   default_parsing() |>   dplyr::select(\"mpg\") |>   possible_plots() #> [1] \"Violin plot\"  \"Scatter plot\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Flexible file import based on extension — read_input","title":"Flexible file import based on extension — read_input","text":"Flexible file import based extension","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(file, consider.na = c(\"NA\", \"\\\"\\\"\", \"\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Flexible file import based on extension — read_input","text":"file file name consider.na character vector strings consider NAs","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Flexible file import based on extension — read_input","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(\"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv\") #> Rows: 28 Columns: 8 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: \",\" #> dbl (8): id, ab, age, imm, vis, ver, att, del #>  #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 28 × 8 #>       id    ab   age   imm   vis   ver   att   del #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1     1     1    74    38    35    30    29    35 #>  2     1     2    69    36    36    21    27    37 #>  3     2     1    63    32    31    26    34    38 #>  4     2     2    64    37    34    26    36    46 #>  5     3     1    69    39    33    31    47    29 #>  6     3     2    70    40    36    31    46    25 #>  7     4     1    79    44    37    20    37    36 #>  8     4     2    81    35    36    31    37    40 #>  9     5     1    77    35    26    17    20    36 #> 10     5     2    80    29    34    18    23    36 #> # ℹ 18 more rows"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Shiny module to browser and export REDCap data — m_redcap_readUI","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"Shiny module browser export REDCap data Test app redcap_read_shiny_module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"m_redcap_readUI(id, title = TRUE)  m_redcap_readServer(id)  redcap_demo_app()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"id Namespace id include_title logical include title","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"shiny ui element shiny server module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"if (FALSE) { # \\dontrun{ redcap_demo_app() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a regression model programatically — regression_model","title":"Create a regression model programatically — regression_model","text":"Output concatenated list model information model","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a regression model programatically — regression_model","text":"","code":"regression_model(   data,   outcome.str,   auto.mode = FALSE,   formula.str = NULL,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_uv(   data,   outcome.str,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )  regression_model_uv_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a regression model programatically — regression_model","text":"data data outcome.str name outcome variable auto.mode Make assumptions function dependent outcome data format. Overwrites arguments. formula.str custom formula glue string. Default NULL. args.list custom character string converted using argsstring2list() list arguments. Default NULL. fun name custom function. Default NULL. vars character vector variables include ... ignored fun.descr Description chosen function matching description \"supported_functions()\"","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a regression model programatically — regression_model","text":"object standard class fun object standard class fun list list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a regression model programatically — regression_model","text":"","code":"gtsummary::trial |>   regression_model(outcome.str = \"age\") #>  #> Call: #> (function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> })(formula = age ~ trt + marker + stage + grade + response +  #>     death + ttdeath, data = structure(list(trt = structure(c(1L,  #> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L,  #> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L,  #> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L,  #> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L,  #> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L,  #> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L,  #> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L,  #> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\", \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(0L,  #>     1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L,  #>     0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L,  #>     0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L,  #>     0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L,  #>     1L, 1L, 0L, 0L), label = \"Tumor Response\"), death = structure(c(0L,  #>     0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L,  #>     0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L,  #>     1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L,  #>     1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L,  #>     1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L,  #>     0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 1L, 0L), label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)    trtDrug B       marker      stageT2      stageT3      stageT4   #>     45.9247      -0.4052      -0.1435       2.0519       2.4437      -3.1573   #>     gradeII     gradeIII     response        death      ttdeath   #>      0.1750       1.6855       4.9885       3.0775      -0.1394   #>  gtsummary::trial |>   regression_model(     outcome.str = \"age\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) #>  #> Call: #> (function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> })(formula = age ~ ., data = structure(list(trt = structure(c(1L,  #> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L,  #> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L,  #> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L,  #> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L,  #> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L,  #> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L,  #> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L,  #> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\", \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(0L,  #>     1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L,  #>     0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L,  #>     0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L,  #>     0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L,  #>     1L, 1L, 0L, 0L), label = \"Tumor Response\"), death = structure(c(0L,  #>     0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L,  #>     0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L,  #>     1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L,  #>     1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L,  #>     1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L,  #>     0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 1L, 0L), label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)    trtDrug B       marker      stageT2      stageT3      stageT4   #>     45.9247      -0.4052      -0.1435       2.0519       2.4437      -3.1573   #>     gradeII     gradeIII     response        death      ttdeath   #>      0.1750       1.6855       4.9885       3.0775      -0.1394   #>  gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     auto.mode = FALSE,     fun = \"stats::glm\",     args.list = list(family = binomial(link = \"logit\"))   ) #>  #> Call:  (function (formula, family = gaussian, data, weights, subset,  #>     na.action, start = NULL, etastart, mustart, offset, control = list(...),  #>     model = TRUE, method = \"glm.fit\", x = FALSE, y = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, ...)  #> { #>     cal <- match.call() #>     if (is.character(family))  #>         family <- get(family, mode = \"function\", envir = parent.frame()) #>     if (is.function(family))  #>         family <- family() #>     if (is.null(family$family)) { #>         print(family) #>         stop(\"'family' not recognized\") #>     } #>     if (missing(data))  #>         data <- environment(formula) #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"etastart\", \"mustart\", \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (identical(method, \"model.frame\"))  #>         return(mf) #>     if (!is.character(method) && !is.function(method))  #>         stop(\"invalid 'method' argument\") #>     if (identical(method, \"glm.fit\"))  #>         control <- do.call(\"glm.control\", control) #>     mt <- attr(mf, \"terms\") #>     Y <- model.response(mf, \"any\") #>     if (length(dim(Y)) == 1L) { #>         nm <- rownames(Y) #>         dim(Y) <- NULL #>         if (!is.null(nm))  #>             names(Y) <- nm #>     } #>     X <- if (!is.empty.model(mt))  #>         model.matrix(mt, mf, contrasts) #>     else matrix(, NROW(Y), 0L) #>     weights <- as.vector(model.weights(mf)) #>     if (!is.null(weights) && !is.numeric(weights))  #>         stop(\"'weights' must be a numeric vector\") #>     if (!is.null(weights) && any(weights < 0))  #>         stop(\"negative weights not allowed\") #>     offset <- as.vector(model.offset(mf)) #>     if (!is.null(offset)) { #>         if (length(offset) != NROW(Y))  #>             stop(gettextf(\"number of offsets is %d should equal %d (number of observations)\",  #>                 length(offset), NROW(Y)), domain = NA) #>     } #>     mustart <- model.extract(mf, \"mustart\") #>     etastart <- model.extract(mf, \"etastart\") #>     fit <- eval(call(if (is.function(method)) \"method\" else method,  #>         x = X, y = Y, weights = weights, start = start, etastart = etastart,  #>         mustart = mustart, offset = offset, family = family,  #>         control = control, intercept = attr(mt, \"intercept\") >  #>             0L, singular.ok = singular.ok)) #>     if (length(offset) && attr(mt, \"intercept\") > 0L) { #>         fit2 <- eval(call(if (is.function(method)) \"method\" else method,  #>             x = X[, \"(Intercept)\", drop = FALSE], y = Y, mustart = fit$fitted.values,  #>             weights = weights, offset = offset, family = family,  #>             control = control, intercept = TRUE)) #>         if (!fit2$converged)  #>             warning(\"fitting to calculate the null deviance did not converge -- increase 'maxit'?\") #>         fit$null.deviance <- fit2$deviance #>     } #>     if (model)  #>         fit$model <- mf #>     fit$na.action <- attr(mf, \"na.action\") #>     if (x)  #>         fit$x <- X #>     if (!y)  #>         fit$y <- NULL #>     structure(c(fit, list(call = cal, formula = formula, terms = mt,  #>         data = data, offset = offset, control = control, method = method,  #>         contrasts = attr(X, \"contrasts\"), xlevels = .getXlevels(mt,  #>             mf))), class = c(fit$class, c(\"glm\", \"lm\"))) #> })(formula = trt ~ age + marker + stage + grade + response +  #>     death + ttdeath, family = structure(list(family = \"binomial\",  #>     link = \"logit\", linkfun = function (mu)  #>     .Call(C_logit_link, mu), linkinv = function (eta)  #>     .Call(C_logit_linkinv, eta), variance = function (mu)  #>     mu * (1 - mu), dev.resids = function (y, mu, wt)  #>     .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y,  #>         n, mu, wt, dev)  #>     { #>         m <- if (any(n > 1))  #>             n #>         else wt #>         -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m *  #>             y), round(m), mu, log = TRUE)) #>     }, mu.eta = function (eta)  #>     .Call(C_logit_mu_eta, eta), initialize = { #>         if (NCOL(y) == 1) { #>             if (is.factor(y))  #>                 y <- y != levels(y)[1L] #>             n <- rep.int(1, nobs) #>             y[weights == 0] <- 0 #>             if (any(y < 0 | y > 1))  #>                 stop(\"y values must be 0 <= y <= 1\") #>             mustart <- (weights * y + 0.5)/(weights + 1) #>             m <- weights * y #>             if (\"binomial\" == \"binomial\" && any(abs(m - round(m)) >  #>                 0.001))  #>                 warning(gettextf(\"non-integer #successes in a %s glm!\",  #>                   \"binomial\"), domain = NA) #>         } #>         else if (NCOL(y) == 2) { #>             if (\"binomial\" == \"binomial\" && any(abs(y - round(y)) >  #>                 0.001))  #>                 warning(gettextf(\"non-integer counts in a %s glm!\",  #>                   \"binomial\"), domain = NA) #>             n <- (y1 <- y[, 1L]) + y[, 2L] #>             y <- y1/n #>             if (any(n0 <- n == 0))  #>                 y[n0] <- 0 #>             weights <- weights * n #>             mustart <- (n * y + 0.5)/(n + 1) #>         } #>         else stop(gettextf(\"for the '%s' family, y must be a vector of 0 and 1's\\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures\",  #>             \"binomial\"), domain = NA) #>     }, validmu = function (mu)  #>     all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta)  #>     TRUE, simulate = function (object, nsim)  #>     { #>         ftd <- fitted(object) #>         n <- length(ftd) #>         ntot <- n * nsim #>         wts <- object$prior.weights #>         if (any(wts%%1 != 0))  #>             stop(\"cannot simulate from non-integer prior.weights\") #>         if (!is.null(m <- object$model)) { #>             y <- model.response(m) #>             if (is.factor(y)) { #>                 yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd),  #>                   labels = levels(y)) #>                 split(yy, rep(seq_len(nsim), each = n)) #>             } #>             else if (is.matrix(y) && ncol(y) == 2) { #>                 yy <- vector(\"list\", nsim) #>                 for (i in seq_len(nsim)) { #>                   Y <- rbinom(n, size = wts, prob = ftd) #>                   YY <- cbind(Y, wts - Y) #>                   colnames(YY) <- colnames(y) #>                   yy[[i]] <- YY #>                 } #>                 yy #>             } #>             else rbinom(ntot, size = wts, prob = ftd)/wts #>         } #>         else rbinom(ntot, size = wts, prob = ftd)/wts #>     }, dispersion = 1), class = \"family\"), data = structure(list( #>     trt = structure(c(1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L,  #>     2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L,  #>     2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L,  #>     2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,  #>     2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #>     1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L,  #>     1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L,  #>     2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L,  #>     2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #>     1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #>     2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L,  #>     2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L,  #>     1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\",  #>     \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(1L,  #>     2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L,  #>     2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L,  #>     1L, 1L, 2L, 1L, NA, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L,  #>     2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L,  #>     1L, 1L, 1L, NA, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L,  #>     1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, NA, 1L, 1L, 2L,  #>     1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L,  #>     1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L,  #>     2L, 2L, NA, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, NA, 2L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L,  #>     1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 2L, NA, 1L, 2L,  #>     1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, NA, 1L,  #>     2L, 2L, 1L, 1L), levels = c(\"0\", \"1\"), class = \"factor\", label = \"Tumor Response\"),  #>     death = structure(c(1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L,  #>     1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L,  #>     2L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L,  #>     2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 2L,  #>     2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 2L,  #>     1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L,  #>     2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 2L, 2L,  #>     2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L,  #>     1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #>     1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L,  #>     1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 1L,  #>     1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 2L,  #>     1L, 2L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 2L,  #>     1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L), levels = c(\"0\",  #>     \"1\"), class = \"factor\", label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)          age       marker      stageT2      stageT3      stageT4   #>    1.652845    -0.002014    -0.259849     0.404341     0.117402    -0.002102   #>     gradeII     gradeIII    response1       death1      ttdeath   #>   -0.037012     0.022890     0.498952    -0.003916    -0.076073   #>  #> Degrees of Freedom: 172 Total (i.e. Null);  162 Residual #>   (27 observations deleted due to missingness) #> Null Deviance:\t    239.5  #> Residual Deviance: 230.9 \tAIC: 252.9 m <- mtcars |>   default_parsing() |>   regression_model(     outcome.str = \"mpg\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~{paste(vars,collapse='+')}\",     args.list = NULL,     vars = c(\"mpg\", \"cyl\")   )   broom::tidy(m) #> # A tibble: 3 × 5 #>   term        estimate std.error statistic  p.value #>   <chr>          <dbl>     <dbl>     <dbl>    <dbl> #> 1 (Intercept)    26.7      0.972     27.4  2.69e-22 #> 2 cyl6           -6.92     1.56      -4.44 1.19e- 4 #> 3 cyl8          -11.6      1.30      -8.90 8.57e-10 if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model_uv(outcome.str = \"age\") gtsummary::trial |>   regression_model_uv(     outcome.str = \"age\",     fun = \"stats::lm\",     args.list = NULL   ) m <- gtsummary::trial |> regression_model_uv(   outcome.str = \"trt\",   fun = \"stats::glm\",   args.list = list(family = stats::binomial(link = \"logit\")) ) lapply(m,broom::tidy) |> dplyr::bind_rows() } # } if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model(     outcome.str = \"age\",     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) ls <- regression_model_list(data = default_parsing(mtcars), outcome.str = \"cyl\", fun.descr = \"Ordinal logistic regression model\") summary(ls$model)  ls <- regression_model_list(data = default_parsing(gtsummary::trial), outcome.str = \"trt\", fun.descr = \"Logistic regression model\") tbl <- gtsummary::tbl_regression(ls$model, exponentiate = TRUE) m <- gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     fun = \"stats::glm\",     formula.str = \"{outcome.str}~.\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) tbl2 <- gtsummary::tbl_regression(m, exponentiate = TRUE) broom::tidy(ls$model) broom::tidy(m) } # } if (FALSE) { # \\dontrun{ gtsummary::trial |> regression_model_uv(   outcome.str = \"trt\",   fun = \"stats::glm\",   args.list = list(family = stats::binomial(link = \"logit\")) ) |> lapply(broom::tidy) |> dplyr::bind_rows() ms <- regression_model_uv_list(data = default_parsing(mtcars), outcome.str = \"mpg\", fun.descr = \"Linear regression model\") lapply(ms$model,broom::tidy) |> dplyr::bind_rows() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Create table of regression model — regression_table","title":"Create table of regression model — regression_table","text":"Create table regression model","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create table of regression model — regression_table","text":"","code":"regression_table(x, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create table of regression model — regression_table","text":"x regression model ... passed methods args.list list arguments passed 'fun'. fun function use table creation. Default \"gtsummary::tbl_regression\".","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create table of regression model — regression_table","text":"object standard class fun","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create table of regression model — regression_table","text":"","code":"if (FALSE) { # \\dontrun{ tbl <- gtsummary::trial |>   regression_model(     outcome.str = \"stage\",     fun = \"MASS::polr\"   ) |>   regression_table(args.list = list(\"exponentiate\" = TRUE)) gtsummary::trial |>   regression_model(     outcome.str = \"age\",     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) |>   regression_table() |> plot() gtsummary::trial |>   regression_model(     outcome.str = \"trt\",     fun = \"stats::glm\",     args.list = list(family = binomial(link = \"logit\"))   ) |>   regression_table() gtsummary::trial |>   regression_model_uv(     outcome.str = \"trt\",     fun = \"stats::glm\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) |>   regression_table() gtsummary::trial |>   regression_model_uv(     outcome.str = \"stage\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) |>   regression_table()  list(   \"Univariable\" = regression_model_uv,   \"Multivariable\" = regression_model ) |>   lapply(\\(.fun){     do.call(       .fun,       c(         list(data = gtsummary::trial),         list(outcome.str = \"stage\")       )     )   }) |>   purrr::map(regression_table) |>   tbl_merge()   } # } regression_table <- function(x, ...) {   UseMethod(\"regression_table\") }  #' @rdname regression_table #' @export regression_table.list <- function(x, ...) {   x |>     purrr::map(\\(.m){       regression_table(x = .m, ...) |>         gtsummary::add_n()     }) |>     gtsummary::tbl_stack() }  #' @rdname regression_table #' @export regression_table.default <- function(x, ..., args.list = NULL, fun = \"gtsummary::tbl_regression\") {   # Stripping custom class   class(x) <- class(x)[class(x) != \"freesearcher_model\"]    if (any(c(length(class(x)) != 1, class(x) != \"lm\"))) {     if (!\"exponentiate\" %in% names(args.list)) {       args.list <- c(args.list, list(exponentiate = TRUE))     }   }    out <- do.call(getfun(fun), c(list(x = x), args.list))   out |>     gtsummary::add_glance_source_note() # |>   # gtsummary::bold_p() }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":null,"dir":"Reference","previous_headings":"","what":"Removes columns with completenes below cutoff — remove_empty_cols","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"Removes columns completenes cutoff","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"remove_empty_cols(data, cutoff = 0.7)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data data frame cutoff numeric","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"data.frame(a=1:10,b=NA, c=c(2,NA)) |> remove_empty_cols(cutoff=.5) #>     a  c #> 1   1  2 #> 2   2 NA #> 3   3  2 #> 4   4 NA #> 5   5  2 #> 6   6 NA #> 7   7  2 #> 8   8 NA #> 9   9  2 #> 10 10 NA"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Remove NA labels — remove_na_attr","title":"Remove NA labels — remove_na_attr","text":"Remove NA labels","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Remove NA labels — remove_na_attr","text":"","code":"remove_na_attr(data, attr = \"label\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Remove NA labels — remove_na_attr","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Remove NA labels — remove_na_attr","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Remove NA labels — remove_na_attr","text":"","code":"ds <- mtcars |> lapply(\\(.x) REDCapCAST::set_attr(.x,label=NA,attr = \"label\")) ds |> remove_na_attr() |> str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : num [1:32] 0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num [1:32] 1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":null,"dir":"Reference","previous_headings":"","what":"Get names of repeated instruments — repeated_instruments","title":"Get names of repeated instruments — repeated_instruments","text":"Get names repeated instruments","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get names of repeated instruments — repeated_instruments","text":"","code":"repeated_instruments(uri, token)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get names of repeated instruments — repeated_instruments","text":"uri REDCap database uri token database token","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get names of repeated instruments — repeated_instruments","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a select input control with icon(s) — selectInputIcon","title":"Create a select input control with icon(s) — selectInputIcon","text":"Extend form controls adding text icons , , sides classic selectInput.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a select input control with icon(s) — selectInputIcon","text":"","code":"selectInputIcon(   inputId,   label,   choices,   selected = NULL,   multiple = FALSE,   selectize = TRUE,   size = NULL,   width = NULL,   icon = NULL )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a select input control with icon(s) — selectInputIcon","text":"inputId input slot used access value. label Display label control, NULL label. choices List values select . elements list named, name — rather value — displayed user. also possible group related inputs providing named list whose elements (either named unnamed) lists, vectors, factors. case, outermost names used group labels (leveraging <optgroup> HTML tag) elements respective sublist. See example section small demo feature. selected initially selected value (multiple values multiple = TRUE). specified defaults first value single-select lists values multiple select lists. multiple selection multiple items allowed? selectize Whether use selectize.js . size Number items show selection box; larger number result taller box. compatible selectize=TRUE. Normally, multiple=FALSE, select input drop-list, size set, box instead. width width input, e.g. '400px', '100%'; see validateCssUnit().","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a select input control with icon(s) — selectInputIcon","text":"numeric input control can added UI definition.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/shiny_freesearcheR.html","id":null,"dir":"Reference","previous_headings":"","what":"Launch the freesearcheR tool locally — shiny_freesearcheR","title":"Launch the freesearcheR tool locally — shiny_freesearcheR","text":"data.frames global environment accessible app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/shiny_freesearcheR.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Launch the freesearcheR tool locally — shiny_freesearcheR","text":"","code":"shiny_freesearcheR(...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/shiny_freesearcheR.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Launch the freesearcheR tool locally — shiny_freesearcheR","text":"... arguments passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/shiny_freesearcheR.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Launch the freesearcheR tool locally — shiny_freesearcheR","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/shiny_freesearcheR.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Launch the freesearcheR tool locally — shiny_freesearcheR","text":"","code":"if (FALSE) { # \\dontrun{ data(mtcars) shiny_freesearcheR(launch.browser = TRUE) } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":null,"dir":"Reference","previous_headings":"","what":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"Specify format arguments include qmd header/frontmatter","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"","code":"specify_qmd_format(data, fileformat = c(\"docx\", \"odt\", \"pdf\", \"all\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"data vector fileformat format include","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily subset by data type function — subset_types","title":"Easily subset by data type function — subset_types","text":"Easily subset data type function","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily subset by data type function — subset_types","text":"","code":"subset_types(data, types, type.fun = outcome_type)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily subset by data type function — subset_types","text":"data data types desired types type.fun function get type. Default outcome_type","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily subset by data type function — subset_types","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily subset by data type function — subset_types","text":"","code":"default_parsing(mtcars) |> subset_types(\"ordinal\") #> # A tibble: 32 × 3 #>    cyl   gear  carb  #>    <fct> <fct> <fct> #>  1 6     4     4     #>  2 6     4     4     #>  3 4     4     1     #>  4 6     3     1     #>  5 8     3     2     #>  6 6     3     1     #>  7 8     3     4     #>  8 4     4     2     #>  9 4     4     2     #> 10 6     4     4     #> # ℹ 22 more rows default_parsing(mtcars) |> subset_types(c(\"dichotomous\", \"ordinal\")) #> # A tibble: 32 × 5 #>    cyl   vs    am    gear  carb  #>    <fct> <fct> <fct> <fct> <fct> #>  1 6     0     1     4     4     #>  2 6     0     1     4     4     #>  3 4     1     1     4     1     #>  4 6     1     0     3     1     #>  5 8     0     0     3     2     #>  6 6     1     0     3     1     #>  7 8     0     0     3     4     #>  8 4     1     0     4     2     #>  9 4     1     0     4     2     #> 10 6     1     0     4     4     #> # ℹ 22 more rows #' default_parsing(mtcars) |> subset_types(\"factor\",class)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_functions","title":"Implemented functions — supported_functions","text":"Library supported functions. list name \"descr\" element unique element list.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_functions","text":"","code":"supported_functions()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_functions","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_functions","text":"","code":"supported_functions() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>  #> $glm #> $glm$descr #> [1] \"Logistic regression model\" #>  #> $glm$design #> [1] \"cross-sectional\" #>  #> $glm$out.type #> [1] \"dichotomous\" #>  #> $glm$fun #> [1] \"stats::glm\" #>  #> $glm$args.list #> $glm$args.list$family #>  #> Family: binomial  #> Link function: logit  #>  #>  #>  #> $glm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $glm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $glm$table.args.list #> list() #>  #>  #> $polr #> $polr$descr #> [1] \"Ordinal logistic regression model\" #>  #> $polr$design #> [1] \"cross-sectional\" #>  #> $polr$out.type #> [1] \"ordinal\" #>  #> $polr$fun #> [1] \"MASS::polr\" #>  #> $polr$args.list #> $polr$args.list$Hess #> [1] TRUE #>  #> $polr$args.list$method #> [1] \"logistic\" #>  #>  #> $polr$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $polr$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $polr$table.args.list #> list() #>  #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_plots","title":"Implemented functions — supported_plots","text":"Library supported functions. list name \"descr\" element unique element list. descr: Plot description primary.type: Primary variable data type (continuous, dichotomous ordinal) secondary.type: Secondary variable data type (continuous, dichotomous ordinal) secondary.extra: \"none\" NULL option choose none. tertiary.type: Tertiary variable data type (continuous, dichotomous ordinal)","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_plots","text":"","code":"supported_plots()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_plots","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_plots","text":"","code":"supported_plots() |> str() #> List of 5 #>  $ plot_hbars  :List of 8 #>   ..$ fun            : chr \"plot_hbars\" #>   ..$ descr          : chr \"Stacked horizontal bars\" #>   ..$ note           : chr \"A classical way of visualising the distribution of an ordinal scale like the modified Ranking Scale and known as Grotta bars\" #>   ..$ primary.type   : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.type : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.extra: chr \"none\" #>  $ plot_violin :List of 8 #>   ..$ fun            : chr \"plot_violin\" #>   ..$ descr          : chr \"Violin plot\" #>   ..$ note           : chr \"A modern alternative to the classic boxplot to visualise data distribution\" #>   ..$ primary.type   : chr [1:3] \"continuous\" \"dichotomous\" \"ordinal\" #>   ..$ secondary.type : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ secondary.extra: chr \"none\" #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>  $ plot_sankey :List of 8 #>   ..$ fun            : chr \"plot_sankey\" #>   ..$ descr          : chr \"Sankey plot\" #>   ..$ note           : chr \"A way of visualising change between groups\" #>   ..$ primary.type   : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.type : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ secondary.extra: NULL #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>  $ plot_scatter:List of 8 #>   ..$ fun            : chr \"plot_scatter\" #>   ..$ descr          : chr \"Scatter plot\" #>   ..$ note           : chr \"A classic way of showing the association between to variables\" #>   ..$ primary.type   : chr \"continuous\" #>   ..$ secondary.type : chr [1:2] \"continuous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.extra: NULL #>  $ plot_euler  :List of 9 #>   ..$ fun            : chr \"plot_euler\" #>   ..$ descr          : chr \"Euler diagram\" #>   ..$ note           : chr \"Generate area-proportional Euler diagrams to display set relationships\" #>   ..$ primary.type   : chr \"dichotomous\" #>   ..$ secondary.type : chr \"dichotomous\" #>   ..$ secondary.multi: logi TRUE #>   ..$ secondary.max  : num 4 #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.extra: NULL"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":null,"dir":"Reference","previous_headings":"","what":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"substitue gtsummary::tbl_merge, use list names tab spanner names.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"","code":"tbl_merge(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"data gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"gt summary list object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Reorder the Levels of a Factor Variable — update-factor","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"module contain interface reorder levels factor variable.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"","code":"update_factor_ui(id)  update_factor_server(id, data_r = reactive(NULL))  modal_update_factor(   id,   title = i18n(\"Update levels of a factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":null,"dir":"Reference","previous_headings":"","what":"Select, rename and convert variables — update-variables","title":"Select, rename and convert variables — update-variables","text":"Select, rename convert variables","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Select, rename and convert variables — update-variables","text":"","code":"update_variables_ui(id, title = \"\")  update_variables_server(   id,   data,   height = NULL,   return_data_on_init = FALSE,   try_silent = FALSE )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Select, rename and convert variables — update-variables","text":"id Module's ID title Module's title, TRUE use default title, use NULL title shiny.tag custom one. data data.frame reactive function returning data.frame. height Height table. return_data_on_init Return initial data module called. try_silent logical: report error messages suppressed?","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Select, rename and convert variables — update-variables","text":"shiny::reactive() function returning updated data.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":null,"dir":"Reference","previous_headings":"","what":"Modified from the datamods pacakge — update_variables_datagrid","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"Modified datamods pacakge","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"update_variables_datagrid(   data,   height = NULL,   selectionId = NULL,   buttonId = NULL )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"data data height height selectionId selectionId buttonId buttonId","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"mtcars |>   summary_vars() |>   update_variables_datagrid() #> Error in update_variables_datagrid(summary_vars(mtcars)): could not find function \"update_variables_datagrid\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":null,"dir":"Reference","previous_headings":"","what":"A selectizeInput customized for named vectors — vectorSelectInput","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput customized named vectors","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"vectorSelectInput(   inputId,   label,   choices,   selected = \"\",   ...,   placeholder = \"\",   onInitialize )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"inputId passed selectizeInput label passed selectizeInput choices named vector fields populated selected default selection ... passed selectizeInput placeholder passed selectizeInput options onInitialize passed selectizeInput options","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput dropdown element","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"if (shiny::interactive()) { shinyApp(   ui = fluidPage(     shiny::uiOutput(\"select\"),     tableOutput(\"data\")   ),   server = function(input, output) {     output$select <- shiny::renderUI({       vectorSelectInput(         inputId = \"variable\", label = \"Variable:\",         data = c(           \"Cylinders\" = \"cyl\",           \"Transmission\" = \"am\",           \"Gears\" = \"gear\"         )       )     })      output$data <- renderTable(       {         mtcars[, c(\"mpg\", input$variable), drop = FALSE]       },       rownames = TRUE     )   } ) } #> Error: 'interactive' is not an exported object from 'namespace:shiny'"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":null,"dir":"Reference","previous_headings":"","what":"Vertical stacked bar plot wrapper — vertical_stacked_bars","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"Vertical stacked bar plot wrapper","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"","code":"vertical_stacked_bars(   data,   score = \"full_score\",   group = \"pase_0_q\",   strata = NULL,   t.size = 10,   l.color = \"black\",   l.size = 0.5,   draw.lines = TRUE )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"data data.frame score outcome variable group grouping variable strata stratifying variable t.size text size","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":null,"dir":"Reference","previous_headings":"","what":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"function requires assumes systematic naming variables. now supports one level pivoting. Adding levels require added \"ignore\" string pattern similarly. Example 2.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"wide2long(   data,   pattern,   type = c(\"prefix\", \"infix\", \"suffix\"),   id.col = 1,   instance.name = \"instance\" )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data data pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\". id.col ID column. fill ID . Column name numeric index. Default \"1\", first column. instance.name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_1\", \"height_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight height #> 1   1  71        0     95     NA #> 2   1  NA        1     98    179 #> 3   2  72        0     77     NA #> 4   2  NA        1     98    182 #> 5   3  70        0     85     NA #> 6   3  NA        1     74    197 #> 7   4  71        0     83     NA #> 8   4  NA        1     82    199 #> 9   5  72        0     90     NA #> 10  5  NA        1     88    179 #> 11  6  75        0     94     NA #> 12  6  NA        1     94    175 #> 13  7  74        0     75     NA #> 14  7  NA        1    100    179 #> 15  8  71        0     91     NA #> 16  8  NA        1     83    195 #> 17  9  78        0     77     NA #> 18  9  NA        1     96    176 #> 19 10  79        0     90     NA #> 20 10  NA        1     92    187 #> 21 11  78        0     93     NA #> 22 11  NA        1     96    188 #> 23 12  71        0     72     NA #> 24 12  NA        1     73    193 #> 25 13  71        0     77     NA #> 26 13  NA        1     89    187 #> 27 14  76        0     74     NA #> 28 14  NA        1    100    192 #> 29 15  73        0     83     NA #> 30 15  NA        1     96    190 #> 31 16  75        0     96     NA #> 32 16  NA        1     82    183 #> 33 17  71        0     82     NA #> 34 17  NA        1     72    192 #> 35 18  76        0     88     NA #> 36 18  NA        1     77    195 #> 37 19  78        0     72     NA #> 38 19  NA        1     93    184 #> 39 20  75        0     97     NA #> 40 20  NA        1     98    198 data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_a_1\", \"height_b_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight weight_a height_b #> 1   1  79        0     75       NA       NA #> 2   1  NA        1     NA       71      171 #> 3   2  74        0     93       NA       NA #> 4   2  NA        1     NA       97      199 #> 5   3  75        0     95       NA       NA #> 6   3  NA        1     NA       81      192 #> 7   4  70        0     97       NA       NA #> 8   4  NA        1     NA       75      195 #> 9   5  70        0     77       NA       NA #> 10  5  NA        1     NA       83      191 #> 11  6  75        0     90       NA       NA #> 12  6  NA        1     NA       95      178 #> 13  7  75        0     76       NA       NA #> 14  7  NA        1     NA       78      200 #> 15  8  79        0     72       NA       NA #> 16  8  NA        1     NA       76      185 #> 17  9  75        0     79       NA       NA #> 18  9  NA        1     NA       88      195 #> 19 10  78        0     70       NA       NA #> 20 10  NA        1     NA       74      199 #> 21 11  70        0     99       NA       NA #> 22 11  NA        1     NA       86      176 #> 23 12  77        0     74       NA       NA #> 24 12  NA        1     NA       78      174 #> 25 13  75        0     74       NA       NA #> 26 13  NA        1     NA       91      192 #> 27 14  70        0     73       NA       NA #> 28 14  NA        1     NA       81      176 #> 29 15  79        0     80       NA       NA #> 30 15  NA        1     NA       91      176 #> 31 16  72        0     78       NA       NA #> 32 16  NA        1     NA       94      181 #> 33 17  77        0     71       NA       NA #> 34 17  NA        1     NA       82      181 #> 35 18  80        0     97       NA       NA #> 36 18  NA        1     NA       81      200 #> 37 19  80        0     79       NA       NA #> 38 19  NA        1     NA       72      195 #> 39 20  74        0     71       NA       NA #> 40 20  NA        1     NA       77      171 # Optional filling of missing values by last observation carried forward # Needed for mmrm analyses long_missings |>   # Fills record ID assuming none are missing   tidyr::fill(record_id) |>   # Grouping by ID for the last step   dplyr::group_by(record_id) |>   # Filling missing data by ID   tidyr::fill(names(long_missings)[!names(long_missings) %in% new_names]) |>   # Remove grouping   dplyr::ungroup() #> Error: object 'long_missings' not found"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"Wrapper save data RDS, load specified qmd render","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"","code":"write_quarto(data, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"data list pass qmd ... Passed quarto::quarto_render()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"output file name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/news/index.html","id":"freesearcher-2532","dir":"Changelog","previous_headings":"","what":"freesearcheR 25.3.2","title":"freesearcheR 25.3.2","text":"Focus polish improved ui/ux. First steps towards updated name (FreesearchR), renamed repository. Also, repo move organisation (named FreesearchR). Testing file upload conducted improved. Working omproving code export.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/news/index.html","id":"freesearcher-2531","dir":"Changelog","previous_headings":"","what":"freesearcheR 25.3.1","title":"freesearcheR 25.3.1","text":"First steps towards focused simplified interface. Focus ease use, handling basic functionality data inspection descriptive analyses. Inspired Stroke Center implementation guidelines WSO, apply similar approach project order keep interface simple robust. Basic functions descriptive analyses data browsing basics. advanced features like regression analyses added learning purposes, really done one self software like R ensure learning reproducibility. Teal dependencies removed. teal framework really seems powerful promising, also mean less control clutter. May come later. main components implemented: Data import different sources Data management (variable creation, re-classing, naming, labelling ) Basic data comparisons descriptive analyses Basic data visualisations select set plot types great publication purposes Regression analysis basic clinical cross-sectional data (mixed models repeated measures survival analyses table) Export outputs (descriptive analyses regression) well modified dataset (code also showed, working ) Next steps : Polished code export Improved workflow descriptive text well thorough step-wise guide/documentation (possibly small videos) Implement clinical projects Implement data analysis courses Extensive testing bug squashing","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/news/index.html","id":"freesearcher-2511","dir":"Changelog","previous_headings":"","what":"freesearcheR 25.1.1","title":"freesearcheR 25.1.1","text":"UI tweaks. NEW: Option set class hms using hms package. NEW: summary grid sparklines. Speed improvements better regression analysis handling. Preparations extending analysis options study designs.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/news/index.html","id":"freesearcher-24121","dir":"Changelog","previous_headings":"","what":"freesearcheR 24.12.1","title":"freesearcheR 24.12.1","text":"Initial release Zenodo.","code":""}]
+[{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement agdamsbo@clin.au.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU Affero General Public License","title":"GNU Affero General Public License","text":"Version 3, 19 November 2007 Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU Affero General Public License","text":"GNU Affero General Public License free, copyleft license software kinds works, specifically designed ensure cooperation community case network server software. licenses software practical works designed take away freedom share change works. contrast, General Public Licenses intended guarantee freedom share change versions program–make sure remains free software users. speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. Developers use General Public Licenses protect rights two steps: (1) assert copyright software, (2) offer License gives legal permission copy, distribute /modify software. secondary benefit defending users’ freedom improvements made alternate versions program, receive widespread use, become available developers incorporate. Many developers free software heartened encouraged resulting cooperation. However, case software used network servers, result may fail come . GNU General Public License permits making modified version letting public access server without ever releasing source code public. GNU Affero General Public License designed specifically ensure , cases, modified source code becomes available community. requires operator network server provide source code modified version running users server. Therefore, public use modified version, publicly accessible server, gives public access source code modified version. older license, called Affero General Public License published Affero, designed accomplish similar goals. different license, version Affero GPL, Affero released new version Affero GPL permits relicensing license. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions.","title":"GNU Affero General Public License","text":"“License” refers version 3 GNU Affero General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Source Code.","title":"GNU Affero General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. 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License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law.","title":"GNU Affero General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies.","title":"GNU Affero General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions.","title":"GNU Affero General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: work must carry prominent notices stating modified , giving relevant date. work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. 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Conveying Non-Source Forms.","title":"GNU Affero General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. 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Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms.","title":"GNU Affero General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. 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Termination.","title":"GNU Affero General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies.","title":"GNU Affero General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients.","title":"GNU Affero General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents.","title":"GNU Affero General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom.","title":"GNU Affero General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_13-remote-network-interaction-use-with-the-gnu-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Remote Network Interaction; Use with the GNU General Public License.","title":"GNU Affero General Public License","text":"Notwithstanding provision License, modify Program, modified version must prominently offer users interacting remotely computer network (version supports interaction) opportunity receive Corresponding Source version providing access Corresponding Source network server charge, standard customary means facilitating copying software. Corresponding Source shall include Corresponding Source work covered version 3 GNU General Public License incorporated pursuant following paragraph. Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU General Public License single combined work, convey resulting work. terms License continue apply part covered work, work combined remain governed version 3 GNU General Public License.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License.","title":"GNU Affero General Public License","text":"Free Software Foundation may publish revised /new versions GNU Affero General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU Affero General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU Affero General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU Affero General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty.","title":"GNU Affero General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability.","title":"GNU Affero General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16.","title":"GNU Affero General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU Affero General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. software can interact users remotely computer network, also make sure provides way users get source. example, program web application, interface display “Source” link leads users archive code. many ways offer source, different solutions better different programs; see section 13 specific requirements. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU AGPL, see https://www.gnu.org/licenses/.","code":"<one line to give the program's name and a brief idea of what it does.>     Copyright (C) <year>  <name of author>      This program is free software: you can redistribute it and/or modify     it under the terms of the GNU Affero General Public License as     published by the Free Software Foundation, either version 3 of the     License, or (at your option) any later version.      This program is distributed in the hope that it will be useful,     but WITHOUT ANY WARRANTY; without even the implied warranty of     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the     GNU Affero General Public License for more details.      You should have received a copy of the GNU Affero General Public License     along with this program.  If not, see <https://www.gnu.org/licenses/>."},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":null,"dir":"","previous_headings":"","what":"Questions and answers","title":"Questions and answers","text":"complete instructions set also available, collection questions answers project use FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":"are-you-keeping-the-uploaded-data","dir":"","previous_headings":"","what":"Are you keeping the uploaded data?","title":"Questions and answers","text":"! uploaded data deleted session ends, stored analyses immediately deleted.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/QA.html","id":"how-do-i-merge-multiple-datasets","dir":"","previous_headings":"","what":"How do I merge multiple datasets?","title":"Questions and answers","text":"can merge multiple sheets ods xls(x) files import common key variable present selected sheets. Multiple file upload/merge currently supported.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/ROADMAP.html","id":null,"dir":"","previous_headings":"","what":"Project roadmap","title":"Project roadmap","text":"current state app considered experimental, lot things still changing. , however, usable state, basic functions available user. (actual list quite long growing) planned features improvements: Stratified analyses Additional study designs: Cross-sectional data analyses Longitudinal data analyses Survival analysis detailed variable browser Add histograms data distribution. 2025-01-16 Option edit labels. 2025-01-16 output controls Theming output tables Select analyses include report Export modified data. 2025-01-16 Include reproducible code steps (maybe , steps, final dataset can exported) Modify factor levels Factor level modifications possible converting factors numeric > cutting numeric desired fixed values. 2024-12-12 options date/datetime/time grouping/factoring. Included weekday month-options. 2024-12-12 Graphs plots Correlation matrix plot data exploration 2025-2-20 Grotta bars ordianl outcomes (sankey) 2025-3-17 Coefficient plotting regression analyses (forest plot) 2025-2-20","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html","id":"getting-started-with-freesearchr","dir":"Articles","previous_headings":"","what":"Getting started with FreesearchR","title":"FreesearchR","text":"simple walk-trough basic instructions functions FreesearchR app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html","id":"launching","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Launching","title":"FreesearchR","text":"easiest way get started launch hosted version app shinyapps.io (click link). Additionally option run app locally access data current working environment. , open R (RStudio similar), run following code install latest version FreesearchR launch app: small note, standalone Windows app version drawing board well, time frame available.","code":"require(\"pak\") pak::pak(\"agdamsbo/FreesearchR\") library(FreesearchR) FreesearchR::launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html","id":"importing-data","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Importing data","title":"FreesearchR","text":"app “Import”, three options available importing data: file upload, REDCap server export local sample data. choosing data source, can set threshold filter data completenes manually specify variables include analyses.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html","id":"file-upload","dir":"Articles","previous_headings":"Getting started with FreesearchR > Importing data","what":"File upload","title":"FreesearchR","text":"Currently several data file formats supported easy import (csv, txt, xls(x), ods, rds, dta). importing workbooks (xls(x) ods), prompted specify sheet(s) import. choosing multiple sheets, automatically merged common variable(s), please make sure key variables correctly named identically.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html","id":"visualise","dir":"Articles","previous_headings":"Getting started with FreesearchR","what":"Visualise","title":"FreesearchR","text":"nice table possible plots, description data options","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/freesearcheR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2025). FreesearchR: Browser Based Data Analysis. R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/, https://github.com/agdamsbo/freesearcheR.","code":"@Manual{,   title = {FreesearchR: Browser Based Data Analysis},   author = {Andreas Gammelgaard Damsbo},   year = {2025},   note = {R package version 25.3.2, https://agdamsbo.github.io/freesearcheR/},   url = {https://github.com/agdamsbo/freesearcheR}, }"},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"freesearchr","dir":"","previous_headings":"","what":"Browser Based Data Analysis","title":"Browser Based Data Analysis","text":"package backbone FreesearchR, free open-source browser based data exploration analysis tool clinicians researchers publication ready output. package FreesearchR-tool part larger initiative democratize health data analysis remove barriers clinicians engage health research. FreesearchR-tool online accessible : link app freely hosted shinyapps.io. feedback welcome can shared GitHub issue. Initiatives funding continued development tool surrounding initiatives ongoing.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"install-locally","dir":"","previous_headings":"","what":"Install locally","title":"Browser Based Data Analysis","text":"FreesearchR-tool can also launched locally. data.frame available global environment accessible interface.","code":"require(\"devtools\") devtools::install_github(\"agdamsbo/FreesearchR\") library(FreesearchR) # By loading mtcars to the environment, it will be available # in the interface like any other data.frame data(mtcars) launch_FreesearchR()"},{"path":"https://agdamsbo.github.io/freesearcheR/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Browser Based Data Analysis","text":"Please note FreesearchR project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert class grid column to icon — add_class_icon","title":"Convert class grid column to icon — add_class_icon","text":"Convert class grid column icon","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert class grid column to icon — add_class_icon","text":"","code":"add_class_icon(grid, column = \"class\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert class grid column to icon — add_class_icon","text":"grid grid column column","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert class grid column to icon — add_class_icon","text":"datagrid","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/add_class_icon.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert class grid column to icon — add_class_icon","text":"","code":"mtcars |>   overview_vars() |>   toastui::datagrid() |>   add_class_icon()      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theme based on unity — custom_theme","title":"Custom theme based on unity — custom_theme","text":"Custom theme based unity","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/custom_theme.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Custom theme based on unity — custom_theme","text":"","code":"custom_theme(   ...,   version = 5,   primary = \"#1E4A8F\",   secondary = \"#FF6F61\",   bootswatch = \"united\",   base_font = bslib::font_google(\"Montserrat\"),   heading_font = bslib::font_google(\"Public Sans\", wght = \"700\"),   code_font = bslib::font_google(\"Open Sans\") )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/custom_theme.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Custom theme based on unity — custom_theme","text":"... everything passed bslib::bs_theme()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/custom_theme.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Custom theme based on unity — custom_theme","text":"theme list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Convert Numeric to Factor — cut-variable","title":"Module to Convert Numeric to Factor — cut-variable","text":"module contain interface cut numeric several intervals.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Convert Numeric to Factor — cut-variable","text":"","code":"cut_variable_ui(id)  cut_variable_server(id, data_r = reactive(NULL))  modal_cut_variable(   id,   title = i18n(\"Convert Numeric to Factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_cut_variable(   id,   title = i18n(\"Convert Numeric to Factor\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Convert Numeric to Factor — cut-variable","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut-variable.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Convert Numeric to Factor — cut-variable","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended cutting function — cut.hms","title":"Extended cutting function — cut.hms","text":"Extended cutting function","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended cutting function — cut.hms","text":"","code":"# S3 method for class 'hms' cut(x, breaks, ...)  # S3 method for class 'POSIXt' cut(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'POSIXct' cut(   x,   breaks,   right = FALSE,   include.lowest = TRUE,   start.on.monday = TRUE,   ... )  # S3 method for class 'Date' cut(x, breaks, start.on.monday = TRUE, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended cutting function — cut.hms","text":"x object inheriting class \"POSIXct\" ... passed ","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended cutting function — cut.hms","text":"factor","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/cut.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended cutting function — cut.hms","text":"","code":"readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(2) #> [1] 01:00:20 01:00:20 01:00:20 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:20 #> 03:01:20 #> 21:20:20 #> Levels: 01:00:20 03:01:20 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(\"min\") #> [1] 01:00:00 03:00:00 01:20:00 08:20:00 21:20:00 03:02:00 #> attr(,\"brks\") #> 01:00:00 #> 01:20:00 #> 03:00:00 #> 03:02:00 #> 08:20:00 #> 21:20:00 #> 21:20:20 #> Levels: 01:00:00 01:20:00 03:00:00 03:02:00 08:20:00 21:20:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(breaks = \"hour\") #> [1] 01:00:00 03:00:00 01:00:00 08:00:00 21:00:00 03:00:00 #> attr(,\"brks\") #> 01:00:00 #> 03:00:00 #> 08:00:00 #> 21:00:00 #> 21:20:20 #> Levels: 01:00:00 03:00:00 08:00:00 21:00:00 readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"08:20:20\", \"21:20:20\", \"03:02:20\")) |> cut(breaks = hms::as_hms(c(\"01:00:00\", \"03:01:20\", \"9:20:20\"))) #> [1] 01:00:00 01:00:00 01:00:00 03:01:20 <NA>     03:01:20 #> attr(,\"brks\") #> 01:00:00 #> 03:01:20 #> 09:20:20 #> Levels: 01:00:00 03:01:20 d_t <- readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) f <- d_t |> cut(2) readr::parse_time(c(\"01:00:20\", \"03:00:20\", \"01:20:20\", \"03:02:20\", NA)) |> cut(breaks = lubridate::as_datetime(c(hms::as_hms(levels(f)), hms::as_hms(max(d_t, na.rm = TRUE) + 1))), right = FALSE) #> Warning: tz(): Don't know how to compute timezone for object of class hms/difftime; returning \"UTC\". #> [1] 01:00:20 02:10:20 01:00:20 02:10:20 <NA>     #> attr(,\"brks\") #> 01:00:20 #> 02:10:20 #> 03:02:21 #> Levels: 01:00:20 02:10:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(2) #> [1] 1992-02-01 01:00:20 1992-02-01 01:00:20 1992-02-01 01:00:20 #> [4] 1992-02-01 01:00:20 1999-02-01 21:20:20 1992-02-01 01:00:20 #> Levels: 1992-02-01 01:00:20 1999-02-01 21:20:20 readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(breaks=\"weekday\") #> Error in cut.POSIXt(readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\",     \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\",     \"1992-12-01 03:02:20\")), breaks = \"weekday\"): invalid specification of 'breaks' readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(breaks=\"month_only\") #> Error in cut.POSIXt(readr::parse_datetime(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\",     \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\",     \"1992-12-01 03:02:20\")), breaks = \"month_only\"): invalid specification of 'breaks' as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(2) #> [1] 1992-02-01 1992-02-01 1992-02-01 1992-02-01 1999-02-01 1992-02-01 #> Levels: 1992-02-01 1999-02-01 as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\", \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\", \"1992-12-01 03:02:20\")) |> cut(breaks=\"weekday\") #> Error in cut.Date(as.Date(c(\"1992-02-01 01:00:20\", \"1992-02-06 03:00:20\",     \"1992-05-01 01:20:20\", \"1992-09-01 08:20:20\", \"1999-02-01 21:20:20\",     \"1992-12-01 03:02:20\")), breaks = \"weekday\"): invalid specification of 'breaks'"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-correlations","title":"Data correlations evaluation module — data-correlations","text":"Data correlations evaluation module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-correlations","text":"","code":"data_correlations_ui(id, ...)  data_correlations_server(id, data, include.class = NULL, cutoff = 0.7, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-correlations","text":"id Module id. (Use 'ns(\"id\")') ... arguments passed toastui::datagrid data data color.main main color color.sec secondary color","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-correlations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-correlations","text":"Shiny ui module shiny server module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-import.html","id":null,"dir":"Reference","previous_headings":"","what":"Test app for the data-import module — data_import_demo_app","title":"Test app for the data-import module — data_import_demo_app","text":"Test app data-import module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-import.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test app for the data-import module — data_import_demo_app","text":"","code":"data_import_demo_app()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-import.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test app for the data-import module — data_import_demo_app","text":"","code":"if (FALSE) { # \\dontrun{ data_import_demo_app() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Data correlations evaluation module — data-plots","title":"Data correlations evaluation module — data-plots","text":"Data correlations evaluation module Wrapper create plot based provided type Nice horizontal stacked bars (Grotta bars) Plot nice ridge plot Readying data sankey plot Beautiful sankey plot option split tertiary group Beautiful violin plot Beatiful violin plot","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data correlations evaluation module — data-plots","text":"","code":"data_visuals_ui(id, tab_title = \"Plots\", ...)  data_visuals_server(id, data, ...)  create_plot(data, type, x, y, z = NULL, ...)  plot_hbars(data, x, y, z = NULL)  plot_ridge(data, x, y, z = NULL, ...)  sankey_ready(data, x, y, numbers = \"count\", ...)  plot_sankey(data, x, y, z = NULL, color.group = \"x\", colors = NULL)  plot_scatter(data, x, y, z = NULL)  plot_violin(data, x, y, z = NULL)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data correlations evaluation module — data-plots","text":"id Module id. (Use 'ns(\"id\")') ... ignored now data data.frame type plot type (derived possible_plots() matches custom function) x primary variable y secondary variable z tertiary variable","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data correlations evaluation module — data-plots","text":"Shiny ui module shiny server module ggplot2 object ggplot2 object ggplot2 object data.frame ggplot2 object ggplot2 object ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data correlations evaluation module — data-plots","text":"","code":"create_plot(mtcars, \"plot_violin\", \"mpg\", \"cyl\") #> Error in if (!z %in% names(data)) {    z <- NULL}: argument is of length zero mtcars |> plot_hbars(x = \"carb\", y = \"cyl\") #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |> plot_hbars(x = \"carb\", y = NULL) #> Scale for fill is already present. #> Adding another scale for fill, which will replace the existing scale.  mtcars |>   default_parsing() |>   plot_ridge(x = \"mpg\", y = \"cyl\") #> Picking joint bandwidth of 1.38  mtcars |> plot_ridge(x = \"mpg\", y = \"cyl\", z = \"gear\") #> Picking joint bandwidth of 1.52 #> Warning: The following aesthetics were dropped during statistical transformation: y and #> fill. #> ℹ This can happen when ggplot fails to infer the correct grouping structure in #>   the data. #> ℹ Did you forget to specify a `group` aesthetic or to convert a numerical #>   variable into a factor? #> Error in ggridges::geom_density_ridges(): Problem while setting up geom. #> ℹ Error occurred in the 1st layer. #> Caused by error in `compute_geom_1()`: #> ! `geom_density_ridges()` requires the following missing aesthetics: y. ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = sample(c(letters[1:4], NA), 100, TRUE, prob = c(rep(.23, 4), .08))) ds |> sankey_ready(\"first\", \"last\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx          ly          #>    <fct> <fct> <int>  <int>  <int> <fct>       <fct>       #>  1 c     c         5     28     15 \"c\\n(n=28)\" \"c\\n(n=15)\" #>  2 c     a         7     28     32 \"c\\n(n=28)\" \"a\\n(n=32)\" #>  3 c     b         6     28     26 \"c\\n(n=28)\" \"b\\n(n=26)\" #>  4 c     d         6     28     17 \"c\\n(n=28)\" \"d\\n(n=17)\" #>  5 c     NA        4     28     10 \"c\\n(n=28)\"  NA         #>  6 a     c         6     24     15 \"a\\n(n=24)\" \"c\\n(n=15)\" #>  7 a     a         9     24     32 \"a\\n(n=24)\" \"a\\n(n=32)\" #>  8 a     b         6     24     26 \"a\\n(n=24)\" \"b\\n(n=26)\" #>  9 a     d         1     24     17 \"a\\n(n=24)\" \"d\\n(n=17)\" #> 10 a     NA        2     24     10 \"a\\n(n=24)\"  NA         #> 11 b     c         4     20     15 \"b\\n(n=20)\" \"c\\n(n=15)\" #> 12 b     a         8     20     32 \"b\\n(n=20)\" \"a\\n(n=32)\" #> 13 b     b         5     20     26 \"b\\n(n=20)\" \"b\\n(n=26)\" #> 14 b     d         2     20     17 \"b\\n(n=20)\" \"d\\n(n=17)\" #> 15 b     NA        1     20     10 \"b\\n(n=20)\"  NA         #> 16 d     a         8     28     32 \"d\\n(n=28)\" \"a\\n(n=32)\" #> 17 d     b         9     28     26 \"d\\n(n=28)\" \"b\\n(n=26)\" #> 18 d     d         8     28     17 \"d\\n(n=28)\" \"d\\n(n=17)\" #> 19 d     NA        3     28     10 \"d\\n(n=28)\"  NA         ds |> sankey_ready(\"first\", \"last\", numbers = \"percentage\") #> # A tibble: 19 × 7 #>    first last      n gx.sum gy.sum lx         ly         #>    <fct> <fct> <int>  <int>  <int> <fct>      <fct>      #>  1 c     c         5     28     15 \"c\\n(28%)\" \"c\\n(15%)\" #>  2 c     a         7     28     32 \"c\\n(28%)\" \"a\\n(32%)\" #>  3 c     b         6     28     26 \"c\\n(28%)\" \"b\\n(26%)\" #>  4 c     d         6     28     17 \"c\\n(28%)\" \"d\\n(17%)\" #>  5 c     NA        4     28     10 \"c\\n(28%)\"  NA        #>  6 a     c         6     24     15 \"a\\n(24%)\" \"c\\n(15%)\" #>  7 a     a         9     24     32 \"a\\n(24%)\" \"a\\n(32%)\" #>  8 a     b         6     24     26 \"a\\n(24%)\" \"b\\n(26%)\" #>  9 a     d         1     24     17 \"a\\n(24%)\" \"d\\n(17%)\" #> 10 a     NA        2     24     10 \"a\\n(24%)\"  NA        #> 11 b     c         4     20     15 \"b\\n(20%)\" \"c\\n(15%)\" #> 12 b     a         8     20     32 \"b\\n(20%)\" \"a\\n(32%)\" #> 13 b     b         5     20     26 \"b\\n(20%)\" \"b\\n(26%)\" #> 14 b     d         2     20     17 \"b\\n(20%)\" \"d\\n(17%)\" #> 15 b     NA        1     20     10 \"b\\n(20%)\"  NA        #> 16 d     a         8     28     32 \"d\\n(28%)\" \"a\\n(32%)\" #> 17 d     b         9     28     26 \"d\\n(28%)\" \"b\\n(26%)\" #> 18 d     d         8     28     17 \"d\\n(28%)\" \"d\\n(17%)\" #> 19 d     NA        3     28     10 \"d\\n(28%)\"  NA        data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   sankey_ready(\"first\", \"last\") #> # A tibble: 8 × 7 #>   first last      n gx.sum gy.sum lx          ly              #>   <fct> <fct> <int>  <int>  <int> <fct>       <fct>           #> 1 a     FALSE    21     29     61 \"a\\n(n=29)\" \"FALSE\\n(n=61)\" #> 2 a     TRUE      8     29     39 \"a\\n(n=29)\" \"TRUE\\n(n=39)\"  #> 3 d     FALSE    12     22     61 \"d\\n(n=22)\" \"FALSE\\n(n=61)\" #> 4 d     TRUE     10     22     39 \"d\\n(n=22)\" \"TRUE\\n(n=39)\"  #> 5 b     FALSE    13     26     61 \"b\\n(n=26)\" \"FALSE\\n(n=61)\" #> 6 b     TRUE     13     26     39 \"b\\n(n=26)\" \"TRUE\\n(n=39)\"  #> 7 c     FALSE    15     23     61 \"c\\n(n=23)\" \"FALSE\\n(n=61)\" #> 8 c     TRUE      8     23     39 \"c\\n(n=23)\" \"TRUE\\n(n=39)\"  ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey(\"first\", \"last\") #> Loading required package: ggplot2  ds |> plot_sankey(\"first\", \"last\", color.group = \"y\")  ds |> plot_sankey(\"first\", \"last\", z = \"g\", color.group = \"y\")  mtcars |> plot_scatter(x = \"mpg\", y = \"wt\")  mtcars |> plot_violin(x = \"mpg\", y = \"cyl\", z = \"gear\") #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 1: `cyl = 4`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 1: `cyl = 4`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 2: `cyl = 6`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: There was 1 warning in `summarize()`. #> ℹ In argument: `V1 = .fun(as.data.frame(pick(everything())), var)`. #> ℹ In group 2: `cyl = 6`. #> Caused by warning in `stats::qt()`: #> ! NaNs produced #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Removed 2 rows containing non-finite outside the scale range #> (`stat_ydensity()`). #> Warning: Groups with fewer than two datapoints have been dropped. #> ℹ Set `drop = FALSE` to consider such groups for position adjustment purposes. #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_point()`). #> Warning: Removed 4 rows containing non-finite outside the scale range #> (`stat_ydensity()`). #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_point()`). #> Warning: Removed 1 row containing non-finite outside the scale range #> (`stat_ydensity()`). #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_point()`)."},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":null,"dir":"Reference","previous_headings":"","what":"Data summary module — data-summary","title":"Data summary module — data-summary","text":"Data summary module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data summary module — data-summary","text":"","code":"data_summary_ui(id)  data_summary_server(id, data, color.main, color.sec, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/data-summary.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data summary module — data-summary","text":"id Module id. 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default_format_arguments","text":"","code":"default_format_arguments()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_format_arguments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Defaults qmd formats — default_format_arguments","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":null,"dir":"Reference","previous_headings":"","what":"Default data parsing — default_parsing","title":"Default data parsing — default_parsing","text":"Default data parsing","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Default data parsing — default_parsing","text":"","code":"default_parsing(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Default data parsing — default_parsing","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Default data parsing — default_parsing","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/default_parsing.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Default data parsing — default_parsing","text":"","code":"mtcars |> str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ... mtcars |>   default_parsing() |>   str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : Factor w/ 3 levels \"4\",\"6\",\"8\": 2 2 1 2 3 2 3 1 1 2 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : Factor w/ 2 levels \"0\",\"1\": 1 1 2 2 1 2 1 2 2 2 ... #>  $ am  : Factor w/ 2 levels \"0\",\"1\": 2 2 2 1 1 1 1 1 1 1 ... #>  $ gear: Factor w/ 3 levels \"3\",\"4\",\"5\": 2 2 2 1 1 1 1 2 2 2 ... #>  $ carb: Factor w/ 6 levels \"1\",\"2\",\"3\",\"4\",..: 4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop empty events from REDCap export — drop_empty_event","title":"Drop empty events from REDCap export — drop_empty_event","text":"Drop empty events REDCap export","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop empty events from REDCap export — drop_empty_event","text":"","code":"drop_empty_event(data, event = \"redcap_event_name\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/drop_empty_event.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop empty events from REDCap export — 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vars)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/factorize.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Factorize variables in data.frame — factorize","text":"data data.frame vars variables force factorize","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/factorize.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Factorize variables in data.frame — factorize","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/file_export.html","id":null,"dir":"Reference","previous_headings":"","what":"Title — file_export","title":"Title — file_export","text":"Title","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/file_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Title — file_export","text":"","code":"file_export(data, output.format = c(\"df\", \"teal\", \"list\"), filename, 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generation","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Merges list of named arguments for qmd header generation — format_writer","text":"","code":"format_writer(data, name)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Merges list of named arguments for qmd header generation — format_writer","text":"data vector name name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/format_writer.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Merges list of named arguments for qmd header generation — format_writer","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_fun_options","title":"Get the function options based on the selected function description — get_fun_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"get_fun_options(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_fun_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_fun_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_fun_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_fun_options","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_functions(design = \"cross-sectional\") |>   (\\(.x){     .x[[1]]   })() |>   get_fun_options() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Print label, and if missing print variable name — get_label","title":"Print label, and if missing print variable name — get_label","text":"Print label, missing print variable name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Print label, and if missing print variable name — get_label","text":"","code":"get_label(data, var = NULL)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Print label, and if missing print variable name — get_label","text":"data vector data frame var variable name. Optional.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Print label, and if missing print variable name — get_label","text":"character string","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Print label, and if missing print variable name — get_label","text":"","code":"mtcars |> get_label(var = \"mpg\") #> [1] \"mpg\" mtcars |> get_label() #> [1] \"mtcars\" mtcars$mpg |> get_label() #> [1] \"mtcars$mpg\" gtsummary::trial |> get_label(var = \"trt\") #> [1] \"Chemotherapy Treatment\" 1:10 |> get_label() #> [1] \"1:10\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the function options based on the selected function description — get_plot_options","title":"Get the function options based on the selected function description — get_plot_options","text":"Get function options based selected function description","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"get_plot_options(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the function options based on the selected function description — get_plot_options","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the function options based on the selected function description — get_plot_options","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/get_plot_options.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get the function options based on the selected function description — get_plot_options","text":"","code":"ls <- mtcars |>   default_parsing() |>   dplyr::pull(mpg) |>   possible_plots() |>   (\\(.x){     .x[[1]]   })() |>   get_plot_options()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function follows idea comment: https://stackoverflow.com/questions/38983179/-call--function--r-without-loading--package","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(x)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"x function function name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"function character vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/getfun.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Wrapper function to get function from character vector referring to function from namespace. Passed to 'do.call()' — getfun","text":"","code":"getfun(\"stats::lm\") #> function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> } #> <bytecode: 0x5611a9ee8db0> #> <environment: namespace:stats>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting export objects — gg_theme_export","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"GGplot default theme plotting export objects","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"","code":"gg_theme_export()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_export.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting export objects — gg_theme_export","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":null,"dir":"Reference","previous_headings":"","what":"GGplot default theme for plotting in Shiny — gg_theme_shiny","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"GGplot default theme plotting Shiny","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"","code":"gg_theme_shiny()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"data ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/gg_theme_shiny.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"GGplot default theme for plotting in Shiny — gg_theme_shiny","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/ggeulerr.html","id":null,"dir":"Reference","previous_headings":"","what":"Area proportional venn diagrams — ggeulerr","title":"Area proportional venn diagrams — ggeulerr","text":"slightly modified https://gist.github.com/danlooo/d23d8bcf8856c7dd8e86266097404ded functions uses eulerr::euler plot area proportional venn diagramms plots using ggplot2","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/ggeulerr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Area proportional venn diagrams — ggeulerr","text":"","code":"ggeulerr(combinations, show_quantities = TRUE, show_labels = TRUE, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/ggeulerr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Area proportional venn diagrams — ggeulerr","text":"combinations set relationships named numeric vector, matrix, data.frame(See eulerr::euler) show_quantities whether show number intersecting elements show_labels whether show set names ... arguments passed eulerr::euler","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":null,"dir":"Reference","previous_headings":"","what":"Matches pattern to vector based on match type — grepl_fix","title":"Matches pattern to vector based on match type — grepl_fix","text":"Matches pattern vector based match type","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"grepl_fix(data, pattern, type = c(\"prefix\", \"infix\", \"suffix\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Matches pattern to vector based on match type — grepl_fix","text":"data vector pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\".","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Matches pattern to vector based on match type — grepl_fix","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/grepl_fix.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Matches pattern to vector based on match type — grepl_fix","text":"","code":"c(\"id\", \"age\", \"weight_0\", \"weight_1\") |> grepl_fix(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #> [1] FALSE FALSE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to ease data file import — import-file-type","title":"Wrapper to ease data file import — import-file-type","text":"Wrapper ease data file import","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to ease data file import — import-file-type","text":"","code":"import_delim(file, skip, encoding, na.strings)  import_xls(file, sheet, skip, na.strings)  import_ods(file, sheet, skip, na.strings)  import_dta(file)  import_rds(file)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to ease data file import — import-file-type","text":"file path file skip number row skip encoding file encoding na.strings character(s) interpret missing values. sheet Excel files, sheet read","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file-type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to ease data file import — import-file-type","text":"data.frame data.frame data.frame data.frame data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file.html","id":null,"dir":"Reference","previous_headings":"","what":"Import data from a file — import-file","title":"Import data from a file — import-file","text":"Let user upload file import data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Import data from a file — import-file","text":"","code":"import_file_ui(   id,   title = \"\",   preview_data = TRUE,   file_extensions = c(\".csv\", \".txt\", \".xls\", \".xlsx\", \".rds\", \".fst\", \".sas7bdat\",     \".sav\"),   layout_params = c(\"dropdown\", \"inline\") )  import_file_server(   id,   btn_show_data = TRUE,   show_data_in = c(\"popup\", \"modal\"),   trigger_return = c(\"button\", \"change\"),   return_class = c(\"data.frame\", \"data.table\", \"tbl_df\", \"raw\"),   reset = reactive(NULL) )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Import data from a file — import-file","text":"preview_data Show preview data file input. file_extensions File extensions accepted shiny::fileInput(), can also MIME type. layout_params display import parameters : dropdown button inline file input.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Test app for the import_file module — import_file_demo_app","title":"Test app for the import_file module — import_file_demo_app","text":"Test app import_file module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"import_file_demo_app()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/import-file_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test app for the import_file module — import_file_demo_app","text":"","code":"if (FALSE) { # \\dontrun{ import_file_demo_app() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":null,"dir":"Reference","previous_headings":"","what":"Split vector by an index and embed addition — index_embed","title":"Split vector by an index and embed addition — index_embed","text":"Split vector index embed addition","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split vector by an index and embed addition — index_embed","text":"","code":"index_embed(data, index, add = NULL)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split vector by an index and embed addition — index_embed","text":"data vector index split index add addition","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/index_embed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split vector by an index and embed addition — index_embed","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":null,"dir":"Reference","previous_headings":"","what":"Test class — is_any_class","title":"Test class — is_any_class","text":"Test class","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test class — is_any_class","text":"","code":"is_any_class(data, class.vec)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test class — is_any_class","text":"data data class.vec vector class names test","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test class — is_any_class","text":"factor","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_any_class.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test class — is_any_class","text":"","code":"if (FALSE) { # \\dontrun{ vapply(REDCapCAST::redcapcast_data, \\(.x){   is_any_class(.x, c(\"hms\", \"Date\", \"POSIXct\", \"POSIXt\")) }, logical(1)) } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":null,"dir":"Reference","previous_headings":"","what":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"Checks elements vector equally spaced indication ID","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"is_consecutive(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"logical","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_consecutive.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Checks if elements in vector are equally spaced as indication of ID — is_consecutive","text":"","code":"1:10 |> is_consecutive() #> [1] TRUE sample(1:100,40) |> is_consecutive() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":null,"dir":"Reference","previous_headings":"","what":"Test is date/datetime/time — is_datetime","title":"Test is date/datetime/time — is_datetime","text":"Test date/datetime/time","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test is date/datetime/time — is_datetime","text":"","code":"is_datetime(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test is date/datetime/time — is_datetime","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test is date/datetime/time — is_datetime","text":"factor","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_datetime.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test is date/datetime/time — is_datetime","text":"","code":"vapply(REDCapCAST::redcapcast_data, is_datetime, logical(1)) #>                    record_id            redcap_event_name  #>                        FALSE                        FALSE  #>     redcap_repeat_instrument       redcap_repeat_instance  #>                        FALSE                        FALSE  #>                          cpr                    inclusion  #>                        FALSE                         TRUE  #>               inclusion_time                          dob  #>                         TRUE                         TRUE  #>                          age                  age_integer  #>                        FALSE                        FALSE  #>                          sex                 cohabitation  #>                        FALSE                        FALSE  #>                 hypertension                     diabetes  #>                        FALSE                        FALSE  #>                       region baseline_data_start_complete  #>                        FALSE                        FALSE  #>                 mrs_assessed                     mrs_date  #>                        FALSE                         TRUE  #>                    mrs_score                 mrs_complete  #>                        FALSE                        FALSE  #>                      con_mrs                     con_calc  #>                        FALSE                        FALSE  #>           consensus_complete               event_datetime  #>                        FALSE                         TRUE  #>                    event_age                   event_type  #>                        FALSE                        FALSE  #>           new_event_complete  #>                        FALSE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if url is valid format for REDCap API — is_valid_redcap_url","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"Test url valid format REDCap API","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"is_valid_redcap_url(url)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"url url","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"logical","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_redcap_url.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if url is valid format for REDCap API — is_valid_redcap_url","text":"","code":"url <- c(   \"www.example.com\",   \"redcap.your.inst/api/\",   \"https://redcap.your.inst/api/\",   \"https://your.inst/redcap/api/\",   \"https://www.your.inst/redcap/api/\" ) is_valid_redcap_url(url) #> [1] FALSE FALSE  TRUE  TRUE  TRUE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":null,"dir":"Reference","previous_headings":"","what":"Validate REDCap token — is_valid_token","title":"Validate REDCap token — is_valid_token","text":"Validate REDCap token","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Validate REDCap token — is_valid_token","text":"","code":"is_valid_token(token, pattern_env = NULL, nchar = 32)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Validate REDCap token — is_valid_token","text":"token token pattern_env pattern","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Validate REDCap token — is_valid_token","text":"logical","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Validate REDCap token — is_valid_token","text":"","code":"token <- paste(sample(c(1:9, LETTERS[1:6]), 32, TRUE), collapse = \"\") is_valid_token(token) #> [1] TRUE"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_FreesearchR.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily launch the FreesearchR app — launch_FreesearchR","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"data.frames global environment accessible app.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_FreesearchR.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"","code":"launch_FreesearchR(...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_FreesearchR.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"... passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_FreesearchR.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/launch_FreesearchR.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily launch the FreesearchR app — launch_FreesearchR","text":"","code":"if (FALSE) { # \\dontrun{ data(mtcars) shiny_FreesearchR(launch.browser = TRUE) } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":null,"dir":"Reference","previous_headings":"","what":"Line breaking at given number of characters for nicely plotting labels — line_break","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"Line breaking given number characters nicely plotting labels","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"line_break(data, lineLength = 20, fixed = FALSE)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"data string lineLength maximum line length fixed flag force split exactly value given lineLength. Default FALSE, splitting spaces.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"character string","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/line_break.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Line breaking at given number of characters for nicely plotting labels — line_break","text":"","code":"\"Lorem ipsum... you know the routine\" |> line_break() #> [1] \"Lorem ipsum... you\\nknow the routine\" paste(sample(letters[1:10], 100, TRUE), collapse = \"\") |> line_break(fixed = TRUE) #> [1] \"jdhegaaegchcffhcedhcgghhdifbfjheabacfibfhecjigehjdgdjfaffbfhfcghgefddidiihdhbgedgdgaahcjicggefhgfjhb\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":null,"dir":"Reference","previous_headings":"","what":"Shiny UI module to load a data file — m_datafileUI","title":"Shiny UI module to load a data file — m_datafileUI","text":"Shiny UI module load data file","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shiny UI module to load a data file — m_datafileUI","text":"","code":"m_datafileUI(id)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shiny UI module to load a data file — m_datafileUI","text":"id id","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/m_datafileUI.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shiny UI module to load a data file — m_datafileUI","text":"shiny UI","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"Wrapper pivot gtsummary table data long plotting","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"","code":"merge_long(list, model.names)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list custom regression models list model.names names models include","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/merge_long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to pivot gtsummary table data to long for plotting — merge_long","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":null,"dir":"Reference","previous_headings":"","what":"Get missingsness fraction — missing_fraction","title":"Get missingsness fraction — missing_fraction","text":"Get missingsness fraction","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get missingsness fraction — missing_fraction","text":"","code":"missing_fraction(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get missingsness fraction — missing_fraction","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get missingsness fraction — missing_fraction","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/missing_fraction.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get missingsness fraction — missing_fraction","text":"","code":"c(NA,1:10,rep(NA,3)) |> missing_fraction() #> [1] 0.2857143"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to modify quarto file to render specific formats — modify_qmd","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"Wrapper modify quarto file render specific formats","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"","code":"modify_qmd(file, format)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"file filename format desired output","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/modify_qmd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to modify quarto file to render specific formats — modify_qmd","text":"none","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":null,"dir":"Reference","previous_headings":"","what":"Outcome data type assessment — outcome_type","title":"Outcome data type assessment — outcome_type","text":"Outcome data type assessment","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Outcome data type assessment — outcome_type","text":"","code":"outcome_type(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Outcome data type assessment — outcome_type","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Outcome data type assessment — outcome_type","text":"outcome type","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/outcome_type.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Outcome data type assessment — outcome_type","text":"","code":"mtcars |>   default_parsing() |>   lapply(outcome_type) #> $mpg #> [1] \"continuous\" #>  #> $cyl #> [1] \"ordinal\" #>  #> $disp #> [1] \"continuous\" #>  #> $hp #> [1] \"continuous\" #>  #> $drat #> [1] \"continuous\" #>  #> $wt #> [1] \"continuous\" #>  #> $qsec #> [1] \"continuous\" #>  #> $vs #> [1] \"dichotomous\" #>  #> $am #> [1] \"dichotomous\" #>  #> $gear #> [1] \"ordinal\" #>  #> $carb #> [1] \"ordinal\" #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a data overview data.frame ready for sparklines — overview_vars","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"Create data overview data.frame ready sparklines","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"overview_vars(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/overview_vars.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a data overview data.frame ready for sparklines — overview_vars","text":"","code":"mtcars |> overview_vars() #> # A tibble: 11 × 7 #>    class   type    name  n_missing p_complete n_unique vals         #>    <chr>   <chr>   <chr>     <dbl>      <dbl>    <int> <named list> #>  1 numeric numeric mpg           0          1       25 <dbl [32]>   #>  2 numeric numeric cyl           0          1        3 <dbl [32]>   #>  3 numeric numeric disp          0          1       27 <dbl [32]>   #>  4 numeric numeric hp            0          1       22 <dbl [32]>   #>  5 numeric numeric drat          0          1       22 <dbl [32]>   #>  6 numeric numeric wt            0          1       29 <dbl [32]>   #>  7 numeric numeric qsec          0          1       30 <dbl [32]>   #>  8 numeric numeric vs            0          1        2 <dbl [32]>   #>  9 numeric numeric am            0          1        2 <dbl [32]>   #> 10 numeric numeric gear          0          1        3 <dbl [32]>   #> 11 numeric numeric carb          0          1        6 <dbl [32]>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":null,"dir":"Reference","previous_headings":"","what":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"Regression coef plot gtsummary. Slightly modified pass arguments","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"# S3 method for class 'tbl_regression' plot(   x,   plot_ref = TRUE,   remove_header_rows = TRUE,   remove_reference_rows = FALSE,   ... )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"x (tbl_regression, tbl_uvregression) 'tbl_regression' 'tbl_uvregression' object ... arguments passed ggstats::ggcoef_plot(...)","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"ggplot object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot.tbl_regression.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Regression coef plot from gtsummary. Slightly modified to pass on arguments — plot.tbl_regression","text":"","code":"if (FALSE) { # \\dontrun{ mod <- lm(mpg ~ ., default_parsing(mtcars)) p <- mod |>   gtsummary::tbl_regression() |>   plot(colour = \"variable\") } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot euler diagrams — plot_euler","title":"Easily plot euler diagrams — plot_euler","text":"Easily plot euler diagrams","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot euler diagrams — plot_euler","text":"","code":"plot_euler(data, x, y, z = NULL, seed = 2103)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily plot euler diagrams — plot_euler","text":"data data x name main variable y name secondary variables z grouping variable seed seed","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot euler diagrams — plot_euler","text":"patchwork object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot euler diagrams — plot_euler","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler(\"A\", c(\"B\", \"C\"), \"D\", seed = 4)  mtcars |> plot_euler(\"vs\", \"am\", seed = 1) #> [[1]]  #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily plot single euler diagrams — plot_euler_single","title":"Easily plot single euler diagrams — plot_euler_single","text":"Easily plot single euler diagrams","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"plot_euler_single(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily plot single euler diagrams — plot_euler_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_euler_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily plot single euler diagrams — plot_euler_single","text":"","code":"data.frame(   A = sample(c(TRUE, TRUE, FALSE), 50, TRUE),   B = sample(c(\"A\", \"C\"), 50, TRUE),   C = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE),   D = sample(c(TRUE, FALSE, FALSE, FALSE), 50, TRUE) ) |> plot_euler_single()  mtcars[c(\"vs\", \"am\")] |> plot_euler_single()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":null,"dir":"Reference","previous_headings":"","what":"Beautiful sankey plot — plot_sankey_single","title":"Beautiful sankey plot — plot_sankey_single","text":"Beautiful sankey plot","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"plot_sankey_single(data, x, y, color.group = c(\"x\", \"y\"), colors = NULL, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Beautiful sankey plot — plot_sankey_single","text":"color.group set group colour . \"x\" \"y\". colors optinally specify colors. Give NA color, color level primary group color level secondary group. ... passed sankey_ready()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Beautiful sankey plot — plot_sankey_single","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/plot_sankey_single.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Beautiful sankey plot — plot_sankey_single","text":"","code":"ds <- data.frame(g = sample(LETTERS[1:2], 100, TRUE), first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)), last = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE))) ds |> plot_sankey_single(\"first\", \"last\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  ds |> plot_sankey_single(\"first\", \"last\", color.group = \"y\") #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes. #> Warning: Some strata appear at multiple axes.  data.frame(   g = sample(LETTERS[1:2], 100, TRUE),   first = REDCapCAST::as_factor(sample(letters[1:4], 100, TRUE)),   last = sample(c(TRUE, FALSE, FALSE), 100, TRUE) ) |>   plot_sankey_single(\"first\", \"last\", color.group = \"x\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_functions","title":"Get possible regression models — possible_functions","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_functions","text":"","code":"possible_functions(data, design = c(\"cross-sectional\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_functions","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_functions","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_functions","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\"  mtcars |>   default_parsing() |>   dplyr::select(\"cyl\") |>   possible_functions(design = \"cross-sectional\") #> [1] \"Ordinal logistic regression model\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Get possible regression models — possible_plots","title":"Get possible regression models — possible_plots","text":"Get possible regression models","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get possible regression models — possible_plots","text":"","code":"possible_plots(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get possible regression models — possible_plots","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get possible regression models — possible_plots","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/possible_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get possible regression models — possible_plots","text":"","code":"mtcars |>   default_parsing() |>   dplyr::pull(\"cyl\") |>   possible_plots() #> [1] \"Stacked horizontal bars\" \"Violin plot\"             #> [3] \"Sankey plot\"              mtcars |>   default_parsing() |>   dplyr::select(\"mpg\") |>   possible_plots() #> [1] \"Violin plot\"  \"Scatter plot\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Flexible file import based on extension — read_input","title":"Flexible file import based on extension — read_input","text":"Flexible file import based extension","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(file, consider.na = c(\"NA\", \"\\\"\\\"\", \"\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Flexible file import based on extension — read_input","text":"file file name consider.na character vector strings consider NAs","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Flexible file import based on extension — read_input","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/read_input.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(\"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv\") #> Rows: 28 Columns: 8 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: \",\" #> dbl (8): id, ab, age, imm, vis, ver, att, del #>  #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 28 × 8 #>       id    ab   age   imm   vis   ver   att   del #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1     1     1    74    38    35    30    29    35 #>  2     1     2    69    36    36    21    27    37 #>  3     2     1    63    32    31    26    34    38 #>  4     2     2    64    37    34    26    36    46 #>  5     3     1    69    39    33    31    47    29 #>  6     3     2    70    40    36    31    46    25 #>  7     4     1    79    44    37    20    37    36 #>  8     4     2    81    35    36    31    37    40 #>  9     5     1    77    35    26    17    20    36 #> 10     5     2    80    29    34    18    23    36 #> # ℹ 18 more rows"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":null,"dir":"Reference","previous_headings":"","what":"Shiny module to browser and export REDCap data — m_redcap_readUI","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"Shiny module browser export REDCap data Test app redcap_read_shiny_module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"m_redcap_readUI(id, title = TRUE)  m_redcap_readServer(id)  redcap_demo_app()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"id Namespace id include_title logical include title","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"shiny ui element shiny server module","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/redcap_read_shiny_module.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Shiny module to browser and export REDCap data — m_redcap_readUI","text":"","code":"if (FALSE) { # \\dontrun{ redcap_demo_app() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a regression model programatically — regression_model","title":"Create a regression model programatically — regression_model","text":"Output concatenated list model information model","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a regression model programatically — regression_model","text":"","code":"regression_model(   data,   outcome.str,   auto.mode = FALSE,   formula.str = NULL,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_uv(   data,   outcome.str,   args.list = NULL,   fun = NULL,   vars = NULL,   ... )  regression_model_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )  regression_model_uv_list(   data,   outcome.str,   fun.descr,   fun = NULL,   formula.str = NULL,   args.list = NULL,   vars = NULL,   ... )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a regression model programatically — regression_model","text":"data data outcome.str name outcome variable auto.mode Make assumptions function dependent outcome data format. Overwrites arguments. formula.str custom formula glue string. Default NULL. args.list custom character string converted using argsstring2list() list arguments. Default NULL. fun name custom function. Default NULL. vars character vector variables include ... ignored fun.descr Description chosen function matching description \"supported_functions()\"","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a regression model programatically — regression_model","text":"object standard class fun object standard class fun list list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_model.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create a regression model programatically — regression_model","text":"","code":"gtsummary::trial |>   regression_model(outcome.str = \"age\") #>  #> Call: #> (function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> })(formula = age ~ trt + marker + stage + grade + response +  #>     death + ttdeath, data = structure(list(trt = structure(c(1L,  #> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L,  #> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L,  #> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L,  #> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L,  #> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L,  #> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L,  #> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L,  #> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\", \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(0L,  #>     1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L,  #>     0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L,  #>     0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L,  #>     0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L,  #>     1L, 1L, 0L, 0L), label = \"Tumor Response\"), death = structure(c(0L,  #>     0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L,  #>     0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L,  #>     1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L,  #>     1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L,  #>     1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L,  #>     0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 1L, 0L), label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)    trtDrug B       marker      stageT2      stageT3      stageT4   #>     45.9247      -0.4052      -0.1435       2.0519       2.4437      -3.1573   #>     gradeII     gradeIII     response        death      ttdeath   #>      0.1750       1.6855       4.9885       3.0775      -0.1394   #>  gtsummary::trial |>   regression_model(     outcome.str = \"age\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) #>  #> Call: #> (function (formula, data, subset, weights, na.action, method = \"qr\",  #>     model = TRUE, x = FALSE, y = FALSE, qr = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, offset, ...)  #> { #>     ret.x <- x #>     ret.y <- y #>     cl <- match.call() #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (method == \"model.frame\")  #>         return(mf) #>     else if (method != \"qr\")  #>         warning(gettextf(\"method = '%s' is not supported. Using 'qr'\",  #>             method), domain = NA) #>     mt <- attr(mf, \"terms\") #>     y <- model.response(mf, \"numeric\") #>     w <- as.vector(model.weights(mf)) #>     if (!is.null(w) && !is.numeric(w))  #>         stop(\"'weights' must be a numeric vector\") #>     offset <- model.offset(mf) #>     mlm <- is.matrix(y) #>     ny <- if (mlm)  #>         nrow(y) #>     else length(y) #>     if (!is.null(offset)) { #>         if (!mlm)  #>             offset <- as.vector(offset) #>         if (NROW(offset) != ny)  #>             stop(gettextf(\"number of offsets is %d, should equal %d (number of observations)\",  #>                 NROW(offset), ny), domain = NA) #>     } #>     if (is.empty.model(mt)) { #>         x <- NULL #>         z <- list(coefficients = if (mlm) matrix(NA_real_, 0,  #>             ncol(y)) else numeric(), residuals = y, fitted.values = 0 *  #>             y, weights = w, rank = 0L, df.residual = if (!is.null(w)) sum(w !=  #>             0) else ny) #>         if (!is.null(offset)) { #>             z$fitted.values <- offset #>             z$residuals <- y - offset #>         } #>     } #>     else { #>         x <- model.matrix(mt, mf, contrasts) #>         z <- if (is.null(w))  #>             lm.fit(x, y, offset = offset, singular.ok = singular.ok,  #>                 ...) #>         else lm.wfit(x, y, w, offset = offset, singular.ok = singular.ok,  #>             ...) #>     } #>     class(z) <- c(if (mlm) \"mlm\", \"lm\") #>     z$na.action <- attr(mf, \"na.action\") #>     z$offset <- offset #>     z$contrasts <- attr(x, \"contrasts\") #>     z$xlevels <- .getXlevels(mt, mf) #>     z$call <- cl #>     z$terms <- mt #>     if (model)  #>         z$model <- mf #>     if (ret.x)  #>         z$x <- x #>     if (ret.y)  #>         z$y <- y #>     if (!qr)  #>         z$qr <- NULL #>     z #> })(formula = age ~ ., data = structure(list(trt = structure(c(1L,  #> 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #> 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L,  #> 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L,  #> 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L,  #> 1L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #> 2L, 1L, 1L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L,  #> 1L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L,  #> 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #> 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L,  #> 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 2L, 1L,  #> 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L,  #> 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\", \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(0L,  #>     1L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L,  #>     0L, 0L, 1L, 0L, NA, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     0L, 0L, 0L, NA, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L,  #>     0L, 0L, 0L, 0L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 0L,  #>     1L, 1L, NA, 1L, 1L, 1L, 0L, 1L, 0L, 0L, 1L, 0L, NA, 1L, 0L,  #>     0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 1L, 1L, 0L, 0L,  #>     0L, 1L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 1L, NA, 0L, 1L,  #>     0L, 0L, 1L, 0L, 1L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, NA, 0L,  #>     1L, 1L, 0L, 0L), label = \"Tumor Response\"), death = structure(c(0L,  #>     0L, 0L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 0L, 0L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 1L, 0L, 1L, 0L,  #>     0L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,  #>     0L, 1L, 0L, 0L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 0L, 1L,  #>     1L, 1L, 1L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 1L,  #>     1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 1L,  #>     1L, 1L, 0L, 1L, 1L, 0L, 1L, 1L, 0L, 0L, 1L, 0L, 0L, 0L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 1L, 0L, 0L, 1L, 1L, 0L, 1L,  #>     0L, 0L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 1L, 1L, 0L,  #>     0L, 1L, 1L, 1L, 0L, 1L, 1L, 1L, 0L, 0L, 0L, 0L, 1L, 0L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 0L, 0L, 0L, 1L, 0L, 1L, 0L, 1L, 1L, 1L,  #>     0L, 1L, 1L, 0L, 0L, 1L, 1L, 1L, 1L, 0L, 1L, 0L, 1L, 1L, 0L,  #>     1L, 0L, 1L, 0L), label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)    trtDrug B       marker      stageT2      stageT3      stageT4   #>     45.9247      -0.4052      -0.1435       2.0519       2.4437      -3.1573   #>     gradeII     gradeIII     response        death      ttdeath   #>      0.1750       1.6855       4.9885       3.0775      -0.1394   #>  gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     auto.mode = FALSE,     fun = \"stats::glm\",     args.list = list(family = binomial(link = \"logit\"))   ) #>  #> Call:  (function (formula, family = gaussian, data, weights, subset,  #>     na.action, start = NULL, etastart, mustart, offset, control = list(...),  #>     model = TRUE, method = \"glm.fit\", x = FALSE, y = TRUE, singular.ok = TRUE,  #>     contrasts = NULL, ...)  #> { #>     cal <- match.call() #>     if (is.character(family))  #>         family <- get(family, mode = \"function\", envir = parent.frame()) #>     if (is.function(family))  #>         family <- family() #>     if (is.null(family$family)) { #>         print(family) #>         stop(\"'family' not recognized\") #>     } #>     if (missing(data))  #>         data <- environment(formula) #>     mf <- match.call(expand.dots = FALSE) #>     m <- match(c(\"formula\", \"data\", \"subset\", \"weights\", \"na.action\",  #>         \"etastart\", \"mustart\", \"offset\"), names(mf), 0L) #>     mf <- mf[c(1L, m)] #>     mf$drop.unused.levels <- TRUE #>     mf[[1L]] <- quote(stats::model.frame) #>     mf <- eval(mf, parent.frame()) #>     if (identical(method, \"model.frame\"))  #>         return(mf) #>     if (!is.character(method) && !is.function(method))  #>         stop(\"invalid 'method' argument\") #>     if (identical(method, \"glm.fit\"))  #>         control <- do.call(\"glm.control\", control) #>     mt <- attr(mf, \"terms\") #>     Y <- model.response(mf, \"any\") #>     if (length(dim(Y)) == 1L) { #>         nm <- rownames(Y) #>         dim(Y) <- NULL #>         if (!is.null(nm))  #>             names(Y) <- nm #>     } #>     X <- if (!is.empty.model(mt))  #>         model.matrix(mt, mf, contrasts) #>     else matrix(, NROW(Y), 0L) #>     weights <- as.vector(model.weights(mf)) #>     if (!is.null(weights) && !is.numeric(weights))  #>         stop(\"'weights' must be a numeric vector\") #>     if (!is.null(weights) && any(weights < 0))  #>         stop(\"negative weights not allowed\") #>     offset <- as.vector(model.offset(mf)) #>     if (!is.null(offset)) { #>         if (length(offset) != NROW(Y))  #>             stop(gettextf(\"number of offsets is %d should equal %d (number of observations)\",  #>                 length(offset), NROW(Y)), domain = NA) #>     } #>     mustart <- model.extract(mf, \"mustart\") #>     etastart <- model.extract(mf, \"etastart\") #>     fit <- eval(call(if (is.function(method)) \"method\" else method,  #>         x = X, y = Y, weights = weights, start = start, etastart = etastart,  #>         mustart = mustart, offset = offset, family = family,  #>         control = control, intercept = attr(mt, \"intercept\") >  #>             0L, singular.ok = singular.ok)) #>     if (length(offset) && attr(mt, \"intercept\") > 0L) { #>         fit2 <- eval(call(if (is.function(method)) \"method\" else method,  #>             x = X[, \"(Intercept)\", drop = FALSE], y = Y, mustart = fit$fitted.values,  #>             weights = weights, offset = offset, family = family,  #>             control = control, intercept = TRUE)) #>         if (!fit2$converged)  #>             warning(\"fitting to calculate the null deviance did not converge -- increase 'maxit'?\") #>         fit$null.deviance <- fit2$deviance #>     } #>     if (model)  #>         fit$model <- mf #>     fit$na.action <- attr(mf, \"na.action\") #>     if (x)  #>         fit$x <- X #>     if (!y)  #>         fit$y <- NULL #>     structure(c(fit, list(call = cal, formula = formula, terms = mt,  #>         data = data, offset = offset, control = control, method = method,  #>         contrasts = attr(X, \"contrasts\"), xlevels = .getXlevels(mt,  #>             mf))), class = c(fit$class, c(\"glm\", \"lm\"))) #> })(formula = trt ~ age + marker + stage + grade + response +  #>     death + ttdeath, family = structure(list(family = \"binomial\",  #>     link = \"logit\", linkfun = function (mu)  #>     .Call(C_logit_link, mu), linkinv = function (eta)  #>     .Call(C_logit_linkinv, eta), variance = function (mu)  #>     mu * (1 - mu), dev.resids = function (y, mu, wt)  #>     .Call(C_binomial_dev_resids, y, mu, wt), aic = function (y,  #>         n, mu, wt, dev)  #>     { #>         m <- if (any(n > 1))  #>             n #>         else wt #>         -2 * sum(ifelse(m > 0, (wt/m), 0) * dbinom(round(m *  #>             y), round(m), mu, log = TRUE)) #>     }, mu.eta = function (eta)  #>     .Call(C_logit_mu_eta, eta), initialize = { #>         if (NCOL(y) == 1) { #>             if (is.factor(y))  #>                 y <- y != levels(y)[1L] #>             n <- rep.int(1, nobs) #>             y[weights == 0] <- 0 #>             if (any(y < 0 | y > 1))  #>                 stop(\"y values must be 0 <= y <= 1\") #>             mustart <- (weights * y + 0.5)/(weights + 1) #>             m <- weights * y #>             if (\"binomial\" == \"binomial\" && any(abs(m - round(m)) >  #>                 0.001))  #>                 warning(gettextf(\"non-integer #successes in a %s glm!\",  #>                   \"binomial\"), domain = NA) #>         } #>         else if (NCOL(y) == 2) { #>             if (\"binomial\" == \"binomial\" && any(abs(y - round(y)) >  #>                 0.001))  #>                 warning(gettextf(\"non-integer counts in a %s glm!\",  #>                   \"binomial\"), domain = NA) #>             n <- (y1 <- y[, 1L]) + y[, 2L] #>             y <- y1/n #>             if (any(n0 <- n == 0))  #>                 y[n0] <- 0 #>             weights <- weights * n #>             mustart <- (n * y + 0.5)/(n + 1) #>         } #>         else stop(gettextf(\"for the '%s' family, y must be a vector of 0 and 1's\\nor a 2 column matrix where col 1 is no. successes and col 2 is no. failures\",  #>             \"binomial\"), domain = NA) #>     }, validmu = function (mu)  #>     all(is.finite(mu)) && all(mu > 0 & mu < 1), valideta = function (eta)  #>     TRUE, simulate = function (object, nsim)  #>     { #>         ftd <- fitted(object) #>         n <- length(ftd) #>         ntot <- n * nsim #>         wts <- object$prior.weights #>         if (any(wts%%1 != 0))  #>             stop(\"cannot simulate from non-integer prior.weights\") #>         if (!is.null(m <- object$model)) { #>             y <- model.response(m) #>             if (is.factor(y)) { #>                 yy <- factor(1 + rbinom(ntot, size = 1, prob = ftd),  #>                   labels = levels(y)) #>                 split(yy, rep(seq_len(nsim), each = n)) #>             } #>             else if (is.matrix(y) && ncol(y) == 2) { #>                 yy <- vector(\"list\", nsim) #>                 for (i in seq_len(nsim)) { #>                   Y <- rbinom(n, size = wts, prob = ftd) #>                   YY <- cbind(Y, wts - Y) #>                   colnames(YY) <- colnames(y) #>                   yy[[i]] <- YY #>                 } #>                 yy #>             } #>             else rbinom(ntot, size = wts, prob = ftd)/wts #>         } #>         else rbinom(ntot, size = wts, prob = ftd)/wts #>     }, dispersion = 1), class = \"family\"), data = structure(list( #>     trt = structure(c(1L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L,  #>     2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L,  #>     2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L,  #>     2L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L,  #>     2L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L,  #>     1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L, 1L,  #>     1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L,  #>     2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 2L,  #>     2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 2L,  #>     1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 1L, 2L, 2L,  #>     2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 1L, 2L, 2L,  #>     2L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L,  #>     1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L), levels = c(\"Drug A\",  #>     \"Drug B\"), class = \"factor\", label = \"Chemotherapy Treatment\"),  #>     age = structure(c(23, 9, 31, NA, 51, 39, 37, 32, 31, 34,  #>     42, 63, 54, 21, 48, 71, 38, 49, 57, 46, 47, 52, 61, 38, 34,  #>     49, 63, 67, 68, 78, 36, 37, 53, 36, 51, 48, 57, 31, 37, 28,  #>     40, 49, 61, 56, 54, 71, 38, 31, 48, NA, 83, 52, 32, 53, 69,  #>     60, 45, 39, NA, 38, 36, 71, 31, 43, 57, 53, 25, 44, 25, 30,  #>     51, 40, NA, 43, 21, 54, 67, 43, 54, 41, 34, 34, 6, 39, 36,  #>     58, 27, 47, NA, 50, 61, 47, 52, 51, 68, 33, 65, 34, 38, 60,  #>     10, 49, 56, 50, 60, 49, 54, 39, 48, 65, 47, 61, 34, NA, NA,  #>     58, 26, 44, 17, 68, 57, 66, 44, NA, 67, 48, 62, 35, 53, 53,  #>     66, 55, 57, 47, 58, 43, 45, 44, 63, 59, 44, 53, 51, 28, 65,  #>     63, 76, 61, 33, 48, 42, 36, 55, 20, 26, 50, 47, 74, 50, 31,  #>     45, 51, 66, 76, 47, 48, 56, 70, 46, 43, 41, 41, 19, 49, 43,  #>     43, 75, 52, 42, 37, 45, 35, 67, 38, 44, 45, 39, 46, NA, 42,  #>     60, 31, 45, 38, NA, 19, 69, 66, NA, 64), label = \"Age\"),  #>     marker = structure(c(0.16, 1.107, 0.277, 2.067, 2.767, 0.613,  #>     0.354, 1.739, 0.144, 0.205, 0.513, 0.06, 0.831, 0.258, 0.128,  #>     0.445, 2.083, 0.157, 0.066, 0.325, 0.266, 0.719, 1.713, 0.096,  #>     0.105, 0.043, 0.981, 1.156, 0.105, 0.175, 0.309, 1.869, 2.008,  #>     1.894, 0.16, 1.209, 0.108, 0.611, 0.222, 0.803, 0.37, NA,  #>     0.177, 1.479, 0.161, 0.737, 0.124, 0.092, 0.385, 0.21, 0.475,  #>     1.628, 0.583, NA, 0.702, 1.206, 2.213, 1.406, 0.101, 0.013,  #>     2.032, 1.046, 0.408, 2.636, 1.263, NA, 2.447, 1.041, 0.531,  #>     0.924, 1.087, 0.733, 2.157, 0.333, 1.527, 2.238, 0.153, 0.305,  #>     0.131, 0.386, 1.645, 1.321, 0.229, 0.615, 1.976, 1.941, 0.22,  #>     3.874, 0.982, 1.68, 1.091, 0.169, 0.511, 2.141, 0.599, NA,  #>     0.389, 0.005, 0.075, 1.491, 0.358, 1.709, 0.056, 1.354, 2.522,  #>     0.387, 0.592, 0.243, 0.215, 1.207, 0.29, 0.718, 0.589, 0.003,  #>     1.328, 0.308, 0.691, 3.249, 0.039, 1.804, 0.238, 2.702, 1.441,  #>     0.27, NA, NA, 0.062, 2.19, 0.976, 3.062, 0.124, 0.045, 1.892,  #>     0.711, 1.079, 1.061, 0.239, 0.361, 0.033, 1.133, 1.225, 1.418,  #>     3.751, 3.02, 0.086, 0.772, 1.882, 2.725, 2.41, 0.352, 0.895,  #>     0.215, 0.141, 2.288, 1.658, 1.255, 1.306, 0.081, 0.667, 0.046,  #>     0.662, 1.985, 1.063, 1.55, 0.015, 0.056, NA, 0.51, 0.929,  #>     2.345, 0.25, 0.816, 0.022, 0.16, 0.547, 3.642, 0.092, 1.2,  #>     1.512, 2.124, NA, 0.862, 0.182, 1.075, 0.021, 0.402, 0.063,  #>     1.129, 0.61, NA, 0.717, 0.205, 0.946, 0.386, 0.37, 1.148,  #>     NA, 0.136, 0.439, 1.148), label = \"Marker Level (ng/mL)\"),  #>     stage = structure(c(1L, 2L, 1L, 3L, 4L, 4L, 1L, 1L, 1L, 3L,  #>     1L, 3L, 4L, 4L, 1L, 4L, 4L, 2L, 1L, 1L, 2L, 2L, 4L, 4L, 4L,  #>     2L, 4L, 1L, 4L, 3L, 1L, 2L, 3L, 3L, 3L, 3L, 1L, 1L, 4L, 4L,  #>     3L, 1L, 4L, 3L, 4L, 1L, 1L, 2L, 1L, 4L, 1L, 2L, 2L, 3L, 3L,  #>     2L, 4L, 1L, 4L, 2L, 4L, 1L, 4L, 1L, 4L, 1L, 1L, 1L, 4L, 1L,  #>     2L, 2L, 2L, 1L, 4L, 4L, 2L, 2L, 4L, 4L, 3L, 2L, 4L, 3L, 2L,  #>     4L, 1L, 2L, 1L, 4L, 3L, 3L, 1L, 3L, 2L, 3L, 2L, 2L, 3L, 4L,  #>     4L, 3L, 3L, 2L, 3L, 2L, 2L, 3L, 2L, 1L, 1L, 3L, 4L, 1L, 4L,  #>     3L, 3L, 2L, 4L, 2L, 1L, 2L, 1L, 4L, 3L, 3L, 3L, 2L, 1L, 2L,  #>     1L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 3L, 4L, 1L, 2L, 2L,  #>     1L, 3L, 4L, 2L, 4L, 2L, 1L, 2L, 3L, 1L, 3L, 4L, 2L, 2L, 1L,  #>     2L, 2L, 3L, 1L, 2L, 2L, 1L, 1L, 3L, 2L, 3L, 1L, 1L, 2L, 4L,  #>     2L, 4L, 4L, 2L, 3L, 4L, 3L, 4L, 4L, 1L, 1L, 4L, 4L, 4L, 1L,  #>     2L, 2L, 2L, 4L, 3L, 3L, 2L, 2L, 4L, 3L), levels = c(\"T1\",  #>     \"T2\", \"T3\", \"T4\"), class = \"factor\", label = \"T Stage\"),  #>     grade = structure(c(2L, 1L, 2L, 3L, 3L, 1L, 2L, 1L, 2L, 1L,  #>     3L, 1L, 3L, 1L, 1L, 3L, 3L, 2L, 3L, 2L, 1L, 2L, 1L, 1L, 2L,  #>     3L, 2L, 2L, 2L, 1L, 3L, 2L, 1L, 1L, 1L, 3L, 2L, 2L, 3L, 2L,  #>     2L, 3L, 3L, 1L, 3L, 1L, 3L, 2L, 2L, 2L, 3L, 3L, 3L, 2L, 3L,  #>     1L, 3L, 1L, 2L, 2L, 3L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 3L, 2L,  #>     1L, 3L, 3L, 3L, 2L, 3L, 3L, 1L, 2L, 1L, 1L, 1L, 1L, 3L, 1L,  #>     3L, 1L, 1L, 1L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 2L, 3L, 1L,  #>     3L, 1L, 2L, 2L, 1L, 2L, 2L, 3L, 1L, 3L, 3L, 1L, 1L, 1L, 2L,  #>     3L, 3L, 2L, 1L, 3L, 2L, 1L, 2L, 2L, 2L, 1L, 3L, 3L, 2L, 3L,  #>     1L, 1L, 1L, 2L, 2L, 3L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L,  #>     2L, 2L, 2L, 2L, 1L, 1L, 3L, 2L, 2L, 1L, 2L, 1L, 2L, 3L, 2L,  #>     1L, 1L, 1L, 3L, 1L, 1L, 2L, 1L, 1L, 3L, 3L, 1L, 3L, 2L, 1L,  #>     3L, 1L, 2L, 1L, 1L, 3L, 1L, 2L, 1L, 2L, 2L, 2L, 3L, 2L, 2L,  #>     3L, 2L, 3L, 3L, 2L, 1L, 2L, 3L, 3L, 1L), levels = c(\"I\",  #>     \"II\", \"III\"), class = \"factor\", label = \"Grade\"), response = structure(c(1L,  #>     2L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 1L,  #>     2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L,  #>     1L, 1L, 2L, 1L, NA, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L,  #>     2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 2L, 2L, 1L,  #>     1L, 1L, 1L, NA, 1L, 2L, 2L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L,  #>     1L, 2L, 2L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, NA, 1L, 1L, 2L,  #>     1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L,  #>     1L, 1L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 2L, 1L, 1L, 1L, 2L, 1L,  #>     2L, 2L, NA, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, NA, 2L, 1L,  #>     1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L,  #>     1L, 2L, 1L, 2L, 1L, 2L, 1L, 2L, 2L, 2L, 1L, 2L, NA, 1L, 2L,  #>     1L, 1L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, NA, 1L,  #>     2L, 2L, 1L, 1L), levels = c(\"0\", \"1\"), class = \"factor\", label = \"Tumor Response\"),  #>     death = structure(c(1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 1L, 2L,  #>     1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 1L, 2L, 2L, 2L,  #>     2L, 1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 1L, 2L, 2L,  #>     2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 2L,  #>     2L, 2L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 1L, 2L, 2L, 2L,  #>     1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 1L, 1L, 1L, 2L,  #>     2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 2L, 1L, 2L, 2L,  #>     2L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 2L, 2L, 1L,  #>     1L, 2L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 2L,  #>     1L, 1L, 2L, 2L, 1L, 2L, 1L, 1L, 2L, 2L, 1L, 1L, 1L, 1L, 2L,  #>     1L, 1L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 2L, 1L,  #>     1L, 1L, 1L, 2L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 1L, 1L, 1L, 2L,  #>     1L, 2L, 1L, 2L, 2L, 2L, 1L, 2L, 2L, 1L, 1L, 2L, 2L, 2L, 2L,  #>     1L, 2L, 1L, 2L, 2L, 1L, 2L, 1L, 2L, 1L), levels = c(\"0\",  #>     \"1\"), class = \"factor\", label = \"Patient Died\"), ttdeath = structure(c(24,  #>     24, 24, 17.64, 16.43, 15.64, 24, 18.43, 24, 10.53, 24, 24,  #>     14.34, 12.89, 22.68, 8.71, 24, 15.21, 24, 24, 24, 24, 16.92,  #>     23.89, 6.32, 15.77, 24, 24, 15.45, 17.43, 24, 20.9, 24, 24,  #>     24, 21.19, 12.52, 24, 15.59, 18, 18.02, 12.43, 12.1, 24,  #>     17.42, 24, 24, 24, 12.19, 10.02, 18.23, 10.42, 24, 24, 19.34,  #>     12.21, 14.46, 19.34, 10.16, 13.15, 10.12, 24, 22.77, 24,  #>     24, 22.13, 24, 20.62, 23.23, 7.38, 24, 24, 24, 24, 24, 19.22,  #>     7.27, 23.88, 16.23, 24, 14.06, 24, 24, 24, 16.44, 23.81,  #>     24, 18.37, 11.44, 20.94, 5.33, 22.92, 10.33, 24, 24, 14.54,  #>     19.14, 24, 21.19, 16.07, 9.97, 24, 24, 24, 19.75, 16.67,  #>     11.18, 18.29, 24, 17.56, 17.45, 24, 22.86, 13.68, 24, 24,  #>     17.46, 24, 24, 24, 24, 24, 13, 9.73, 15.65, 24, 3.53, 20.35,  #>     23.41, 16.47, 24, 24, 14.65, 17.81, 24, 21.83, 24, 24, 21.49,  #>     12.68, 24, 24, 24, 24, 10.07, 24, 24, 24, 8.37, 20.33, 24,  #>     24, 21.33, 12.63, 13.08, 24, 15.1, 20.14, 10.55, 24, 24,  #>     24, 24, 23.6, 24, 19.98, 15.55, 23.72, 22.41, 19.54, 16.57,  #>     24, 24, 24, 21.91, 24, 12.53, 24, 18.63, 14.82, 16.46, 24,  #>     9.24, 17.77, 24, 24, 9.92, 16.16, 10.51, 20.81, 24, 16.44,  #>     24, 22.4, 11.76, 24, 21.6, 24, 19.81, 24), label = \"Months to Death/Censor\")), class = c(\"tbl_df\",  #> \"tbl\", \"data.frame\"), row.names = c(NA, -200L))) #>  #> Coefficients: #> (Intercept)          age       marker      stageT2      stageT3      stageT4   #>    1.652845    -0.002014    -0.259849     0.404341     0.117402    -0.002102   #>     gradeII     gradeIII    response1       death1      ttdeath   #>   -0.037012     0.022890     0.498952    -0.003916    -0.076073   #>  #> Degrees of Freedom: 172 Total (i.e. Null);  162 Residual #>   (27 observations deleted due to missingness) #> Null Deviance:\t    239.5  #> Residual Deviance: 230.9 \tAIC: 252.9 m <- mtcars |>   default_parsing() |>   regression_model(     outcome.str = \"mpg\",     auto.mode = FALSE,     fun = \"stats::lm\",     formula.str = \"{outcome.str}~{paste(vars,collapse='+')}\",     args.list = NULL,     vars = c(\"mpg\", \"cyl\")   )   broom::tidy(m) #> # A tibble: 3 × 5 #>   term        estimate std.error statistic  p.value #>   <chr>          <dbl>     <dbl>     <dbl>    <dbl> #> 1 (Intercept)    26.7      0.972     27.4  2.69e-22 #> 2 cyl6           -6.92     1.56      -4.44 1.19e- 4 #> 3 cyl8          -11.6      1.30      -8.90 8.57e-10 if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model_uv(outcome.str = \"age\") gtsummary::trial |>   regression_model_uv(     outcome.str = \"age\",     fun = \"stats::lm\",     args.list = NULL   ) m <- gtsummary::trial |> regression_model_uv(   outcome.str = \"trt\",   fun = \"stats::glm\",   args.list = list(family = stats::binomial(link = \"logit\")) ) lapply(m,broom::tidy) |> dplyr::bind_rows() } # } if (FALSE) { # \\dontrun{ gtsummary::trial |>   regression_model(     outcome.str = \"age\",     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) ls <- regression_model_list(data = default_parsing(mtcars), outcome.str = \"cyl\", fun.descr = \"Ordinal logistic regression model\") summary(ls$model)  ls <- regression_model_list(data = default_parsing(gtsummary::trial), outcome.str = \"trt\", fun.descr = \"Logistic regression model\") tbl <- gtsummary::tbl_regression(ls$model, exponentiate = TRUE) m <- gtsummary::trial |>   default_parsing() |>   regression_model(     outcome.str = \"trt\",     fun = \"stats::glm\",     formula.str = \"{outcome.str}~.\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) tbl2 <- gtsummary::tbl_regression(m, exponentiate = TRUE) broom::tidy(ls$model) broom::tidy(m) } # } if (FALSE) { # \\dontrun{ gtsummary::trial |> regression_model_uv(   outcome.str = \"trt\",   fun = \"stats::glm\",   args.list = list(family = stats::binomial(link = \"logit\")) ) |> lapply(broom::tidy) |> dplyr::bind_rows() ms <- regression_model_uv_list(data = default_parsing(mtcars), outcome.str = \"mpg\", fun.descr = \"Linear regression model\") lapply(ms$model,broom::tidy) |> dplyr::bind_rows() } # }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Create table of regression model — regression_table","title":"Create table of regression model — regression_table","text":"Create table regression model","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create table of regression model — regression_table","text":"","code":"regression_table(x, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create table of regression model — regression_table","text":"x regression model ... passed methods args.list list arguments passed 'fun'. fun function use table creation. Default \"gtsummary::tbl_regression\".","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create table of regression model — regression_table","text":"object standard class fun","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/regression_table.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create table of regression model — regression_table","text":"","code":"if (FALSE) { # \\dontrun{ tbl <- gtsummary::trial |>   regression_model(     outcome.str = \"stage\",     fun = \"MASS::polr\"   ) |>   regression_table(args.list = list(\"exponentiate\" = TRUE)) gtsummary::trial |>   regression_model(     outcome.str = \"age\",     fun = \"stats::lm\",     formula.str = \"{outcome.str}~.\",     args.list = NULL   ) |>   regression_table() |> plot() gtsummary::trial |>   regression_model(     outcome.str = \"trt\",     fun = \"stats::glm\",     args.list = list(family = binomial(link = \"logit\"))   ) |>   regression_table() gtsummary::trial |>   regression_model_uv(     outcome.str = \"trt\",     fun = \"stats::glm\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) |>   regression_table() gtsummary::trial |>   regression_model_uv(     outcome.str = \"stage\",     args.list = list(family = stats::binomial(link = \"logit\"))   ) |>   regression_table()  list(   \"Univariable\" = regression_model_uv,   \"Multivariable\" = regression_model ) |>   lapply(\\(.fun){     do.call(       .fun,       c(         list(data = gtsummary::trial),         list(outcome.str = \"stage\")       )     )   }) |>   purrr::map(regression_table) |>   tbl_merge()   } # } regression_table <- function(x, ...) {   UseMethod(\"regression_table\") }  #' @rdname regression_table #' @export regression_table.list <- function(x, ...) {   x |>     purrr::map(\\(.m){       regression_table(x = .m, ...) |>         gtsummary::add_n()     }) |>     gtsummary::tbl_stack() }  #' @rdname regression_table #' @export regression_table.default <- function(x, ..., args.list = NULL, fun = \"gtsummary::tbl_regression\") {   # Stripping custom class   class(x) <- class(x)[class(x) != \"freesearchr_model\"]    if (any(c(length(class(x)) != 1, class(x) != \"lm\"))) {     if (!\"exponentiate\" %in% names(args.list)) {       args.list <- c(args.list, list(exponentiate = TRUE))     }   }    out <- do.call(getfun(fun), c(list(x = x), args.list))   out |>     gtsummary::add_glance_source_note() # |>   # gtsummary::bold_p() }"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":null,"dir":"Reference","previous_headings":"","what":"Removes columns with completenes below cutoff — remove_empty_cols","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"Removes columns completenes cutoff","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"remove_empty_cols(data, cutoff = 0.7)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data data frame cutoff numeric","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"data frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_empty_cols.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Removes columns with completenes below cutoff — remove_empty_cols","text":"","code":"data.frame(a=1:10,b=NA, c=c(2,NA)) |> remove_empty_cols(cutoff=.5) #>     a  c #> 1   1  2 #> 2   2 NA #> 3   3  2 #> 4   4 NA #> 5   5  2 #> 6   6 NA #> 7   7  2 #> 8   8 NA #> 9   9  2 #> 10 10 NA"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Remove NA labels — remove_na_attr","title":"Remove NA labels — remove_na_attr","text":"Remove NA labels","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Remove NA labels — remove_na_attr","text":"","code":"remove_na_attr(data, attr = \"label\")"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Remove NA labels — remove_na_attr","text":"data data","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Remove NA labels — remove_na_attr","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/remove_na_attr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Remove NA labels — remove_na_attr","text":"","code":"ds <- mtcars |> lapply(\\(.x) REDCapCAST::set_attr(.x,label=NA,attr = \"label\")) ds |> remove_na_attr() |> str() #> tibble [32 × 11] (S3: tbl_df/tbl/data.frame) #>  $ mpg : num [1:32] 21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num [1:32] 6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num [1:32] 160 160 108 258 360 ... #>  $ hp  : num [1:32] 110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num [1:32] 3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num [1:32] 2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num [1:32] 16.5 17 18.6 19.4 17 ... #>  $ vs  : num [1:32] 0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num [1:32] 1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num [1:32] 4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num [1:32] 4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":null,"dir":"Reference","previous_headings":"","what":"Get names of repeated instruments — repeated_instruments","title":"Get names of repeated instruments — repeated_instruments","text":"Get names repeated instruments","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get names of repeated instruments — repeated_instruments","text":"","code":"repeated_instruments(uri, token)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get names of repeated instruments — repeated_instruments","text":"uri REDCap database uri token database token","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/repeated_instruments.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get names of repeated instruments — repeated_instruments","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":null,"dir":"Reference","previous_headings":"","what":"Create a select input control with icon(s) — selectInputIcon","title":"Create a select input control with icon(s) — selectInputIcon","text":"Extend form controls adding text icons , , sides classic selectInput.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create a select input control with icon(s) — selectInputIcon","text":"","code":"selectInputIcon(   inputId,   label,   choices,   selected = NULL,   multiple = FALSE,   selectize = TRUE,   size = NULL,   width = NULL,   icon = NULL )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create a select input control with icon(s) — selectInputIcon","text":"inputId input slot used access value. label Display label control, NULL label. choices List values select . elements list named, name — rather value — displayed user. also possible group related inputs providing named list whose elements (either named unnamed) lists, vectors, factors. case, outermost names used group labels (leveraging <optgroup> HTML tag) elements respective sublist. See example section small demo feature. selected initially selected value (multiple values multiple = TRUE). specified defaults first value single-select lists values multiple select lists. multiple selection multiple items allowed? selectize Whether use selectize.js . size Number items show selection box; larger number result taller box. compatible selectize=TRUE. Normally, multiple=FALSE, select input drop-list, size set, box instead. width width input, e.g. '400px', '100%'; see validateCssUnit().","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/selectInputIcon.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create a select input control with icon(s) — selectInputIcon","text":"numeric input control can added UI definition.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":null,"dir":"Reference","previous_headings":"","what":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"Specify format arguments include qmd header/frontmatter","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"","code":"specify_qmd_format(data, fileformat = c(\"docx\", \"odt\", \"pdf\", \"all\"))"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"data vector fileformat format include","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/specify_qmd_format.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Specify format arguments to include in qmd header/frontmatter — specify_qmd_format","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":null,"dir":"Reference","previous_headings":"","what":"Easily subset by data type function — subset_types","title":"Easily subset by data type function — subset_types","text":"Easily subset data type function","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easily subset by data type function — subset_types","text":"","code":"subset_types(data, types, type.fun = outcome_type)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easily subset by data type function — subset_types","text":"data data types desired types type.fun function get type. Default outcome_type","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easily subset by data type function — subset_types","text":"vector","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/subset_types.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easily subset by data type function — subset_types","text":"","code":"default_parsing(mtcars) |> subset_types(\"ordinal\") #> # A tibble: 32 × 3 #>    cyl   gear  carb  #>    <fct> <fct> <fct> #>  1 6     4     4     #>  2 6     4     4     #>  3 4     4     1     #>  4 6     3     1     #>  5 8     3     2     #>  6 6     3     1     #>  7 8     3     4     #>  8 4     4     2     #>  9 4     4     2     #> 10 6     4     4     #> # ℹ 22 more rows default_parsing(mtcars) |> subset_types(c(\"dichotomous\", \"ordinal\")) #> # A tibble: 32 × 5 #>    cyl   vs    am    gear  carb  #>    <fct> <fct> <fct> <fct> <fct> #>  1 6     0     1     4     4     #>  2 6     0     1     4     4     #>  3 4     1     1     4     1     #>  4 6     1     0     3     1     #>  5 8     0     0     3     2     #>  6 6     1     0     3     1     #>  7 8     0     0     3     4     #>  8 4     1     0     4     2     #>  9 4     1     0     4     2     #> 10 6     1     0     4     4     #> # ℹ 22 more rows #' default_parsing(mtcars) |> subset_types(\"factor\",class)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_functions","title":"Implemented functions — supported_functions","text":"Library supported functions. list name \"descr\" element unique element list.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_functions","text":"","code":"supported_functions()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_functions","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_functions.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_functions","text":"","code":"supported_functions() #> $lm #> $lm$descr #> [1] \"Linear regression model\" #>  #> $lm$design #> [1] \"cross-sectional\" #>  #> $lm$out.type #> [1] \"continuous\" #>  #> $lm$fun #> [1] \"stats::lm\" #>  #> $lm$args.list #> NULL #>  #> $lm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $lm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $lm$table.args.list #> $lm$table.args.list$exponentiate #> [1] FALSE #>  #>  #>  #> $glm #> $glm$descr #> [1] \"Logistic regression model\" #>  #> $glm$design #> [1] \"cross-sectional\" #>  #> $glm$out.type #> [1] \"dichotomous\" #>  #> $glm$fun #> [1] \"stats::glm\" #>  #> $glm$args.list #> $glm$args.list$family #>  #> Family: binomial  #> Link function: logit  #>  #>  #>  #> $glm$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $glm$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $glm$table.args.list #> list() #>  #>  #> $polr #> $polr$descr #> [1] \"Ordinal logistic regression model\" #>  #> $polr$design #> [1] \"cross-sectional\" #>  #> $polr$out.type #> [1] \"ordinal\" #>  #> $polr$fun #> [1] \"MASS::polr\" #>  #> $polr$args.list #> $polr$args.list$Hess #> [1] TRUE #>  #> $polr$args.list$method #> [1] \"logistic\" #>  #>  #> $polr$formula.str #> [1] \"{outcome.str}~{paste(vars,collapse='+')}\" #>  #> $polr$table.fun #> [1] \"gtsummary::tbl_regression\" #>  #> $polr$table.args.list #> list() #>  #>"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":null,"dir":"Reference","previous_headings":"","what":"Implemented functions — supported_plots","title":"Implemented functions — supported_plots","text":"Library supported functions. list name \"descr\" element unique element list. descr: Plot description primary.type: Primary variable data type (continuous, dichotomous ordinal) secondary.type: Secondary variable data type (continuous, dichotomous ordinal) secondary.extra: \"none\" NULL option choose none. tertiary.type: Tertiary variable data type (continuous, dichotomous ordinal)","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Implemented functions — supported_plots","text":"","code":"supported_plots()"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Implemented functions — supported_plots","text":"list","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/supported_plots.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Implemented functions — supported_plots","text":"","code":"supported_plots() |> str() #> List of 5 #>  $ plot_hbars  :List of 8 #>   ..$ fun            : chr \"plot_hbars\" #>   ..$ descr          : chr \"Stacked horizontal bars\" #>   ..$ note           : chr \"A classical way of visualising the distribution of an ordinal scale like the modified Ranking Scale and known as Grotta bars\" #>   ..$ primary.type   : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.type : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.extra: chr \"none\" #>  $ plot_violin :List of 8 #>   ..$ fun            : chr \"plot_violin\" #>   ..$ descr          : chr \"Violin plot\" #>   ..$ note           : chr \"A modern alternative to the classic boxplot to visualise data distribution\" #>   ..$ primary.type   : chr [1:3] \"continuous\" \"dichotomous\" \"ordinal\" #>   ..$ secondary.type : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ secondary.extra: chr \"none\" #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>  $ plot_sankey :List of 8 #>   ..$ fun            : chr \"plot_sankey\" #>   ..$ descr          : chr \"Sankey plot\" #>   ..$ note           : chr \"A way of visualising change between groups\" #>   ..$ primary.type   : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.type : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ secondary.extra: NULL #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>  $ plot_scatter:List of 8 #>   ..$ fun            : chr \"plot_scatter\" #>   ..$ descr          : chr \"Scatter plot\" #>   ..$ note           : chr \"A classic way of showing the association between to variables\" #>   ..$ primary.type   : chr \"continuous\" #>   ..$ secondary.type : chr [1:2] \"continuous\" \"ordinal\" #>   ..$ secondary.multi: logi FALSE #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.extra: NULL #>  $ plot_euler  :List of 9 #>   ..$ fun            : chr \"plot_euler\" #>   ..$ descr          : chr \"Euler diagram\" #>   ..$ note           : chr \"Generate area-proportional Euler diagrams to display set relationships\" #>   ..$ primary.type   : chr \"dichotomous\" #>   ..$ secondary.type : chr \"dichotomous\" #>   ..$ secondary.multi: logi TRUE #>   ..$ secondary.max  : num 4 #>   ..$ tertiary.type  : chr [1:2] \"dichotomous\" \"ordinal\" #>   ..$ secondary.extra: NULL"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":null,"dir":"Reference","previous_headings":"","what":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"substitue gtsummary::tbl_merge, use list names tab spanner names.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"","code":"tbl_merge(data)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"data gtsummary list object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/tbl_merge.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A substitue to gtsummary::tbl_merge, that will use list names for the tab spanner names. — tbl_merge","text":"gt summary list object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Module to Reorder the Levels of a Factor Variable — update-factor","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"module contain interface reorder levels factor variable.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"","code":"update_factor_ui(id)  update_factor_server(id, data_r = reactive(NULL))  modal_update_factor(   id,   title = i18n(\"Update levels of a factor\"),   easyClose = TRUE,   size = \"l\",   footer = NULL )  winbox_update_factor(   id,   title = i18n(\"Update levels of a factor\"),   options = shinyWidgets::wbOptions(),   controls = shinyWidgets::wbControls() )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"id Module ID. data_r shiny::reactive() function returning data.frame. title optional title dialog. easyClose TRUE, modal dialog can dismissed clicking outside dialog box, pressing Escape key. FALSE (default), modal dialog dismissed ways; instead must dismissed clicking modalButton(), call removeModal() server. size One \"s\" small, \"m\" (default) medium, \"l\" large, \"xl\" extra large. Note \"xl\" works Bootstrap 4 (opt-Bootstrap 4+, pass bslib::bs_theme() theme argument page container like fluidPage()). footer UI footer. Use NULL footer. options List options, see wbOptions(). controls List controls, see wbControls().","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-factor.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Module to Reorder the Levels of a Factor Variable — update-factor","text":"shiny::reactive() function returning data.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":null,"dir":"Reference","previous_headings":"","what":"Select, rename and convert variables — update-variables","title":"Select, rename and convert variables — update-variables","text":"Select, rename convert variables","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Select, rename and convert variables — update-variables","text":"","code":"update_variables_ui(id, title = \"\")  update_variables_server(   id,   data,   height = NULL,   return_data_on_init = FALSE,   try_silent = FALSE )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Select, rename and convert variables — update-variables","text":"id Module's ID title Module's title, TRUE use default title, use NULL title shiny.tag custom one. data data.frame reactive function returning data.frame. height Height table. return_data_on_init Return initial data module called. try_silent logical: report error messages suppressed?","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update-variables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Select, rename and convert variables — update-variables","text":"shiny::reactive() function returning updated data.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":null,"dir":"Reference","previous_headings":"","what":"Modified from the datamods pacakge — update_variables_datagrid","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"Modified datamods pacakge","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"update_variables_datagrid(   data,   height = NULL,   selectionId = NULL,   buttonId = NULL )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"data data height height selectionId selectionId buttonId buttonId","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/update_variables_datagrid.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Modified from the datamods pacakge — update_variables_datagrid","text":"","code":"mtcars |>   summary_vars() |>   update_variables_datagrid() #> Error in update_variables_datagrid(summary_vars(mtcars)): could not find function \"update_variables_datagrid\""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":null,"dir":"Reference","previous_headings":"","what":"A selectizeInput customized for named vectors — vectorSelectInput","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput customized named vectors","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"vectorSelectInput(   inputId,   label,   choices,   selected = \"\",   ...,   placeholder = \"\",   onInitialize )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"inputId passed selectizeInput label passed selectizeInput choices named vector fields populated selected default selection ... passed selectizeInput placeholder passed selectizeInput options onInitialize passed selectizeInput options","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"selectizeInput dropdown element","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vectorSelectInput.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"A selectizeInput customized for named vectors — vectorSelectInput","text":"","code":"if (shiny::interactive()) { shinyApp(   ui = fluidPage(     shiny::uiOutput(\"select\"),     tableOutput(\"data\")   ),   server = function(input, output) {     output$select <- shiny::renderUI({       vectorSelectInput(         inputId = \"variable\", label = \"Variable:\",         data = c(           \"Cylinders\" = \"cyl\",           \"Transmission\" = \"am\",           \"Gears\" = \"gear\"         )       )     })      output$data <- renderTable(       {         mtcars[, c(\"mpg\", input$variable), drop = FALSE]       },       rownames = TRUE     )   } ) } #> Error: 'interactive' is not an exported object from 'namespace:shiny'"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":null,"dir":"Reference","previous_headings":"","what":"Vertical stacked bar plot wrapper — vertical_stacked_bars","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"Vertical stacked bar plot wrapper","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"","code":"vertical_stacked_bars(   data,   score = \"full_score\",   group = \"pase_0_q\",   strata = NULL,   t.size = 10,   l.color = \"black\",   l.size = 0.5,   draw.lines = TRUE )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"data data.frame score outcome variable group grouping variable strata stratifying variable t.size text size","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/vertical_stacked_bars.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Vertical stacked bar plot wrapper — vertical_stacked_bars","text":"ggplot2 object","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":null,"dir":"Reference","previous_headings":"","what":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"function requires assumes systematic naming variables. now supports one level pivoting. Adding levels require added \"ignore\" string pattern similarly. Example 2.","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"wide2long(   data,   pattern,   type = c(\"prefix\", \"infix\", \"suffix\"),   id.col = 1,   instance.name = \"instance\" )"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data data pattern pattern(s) match. Character vector length 1 . type type match. can one \"prefix\",\"infix\" \"suffix\". id.col ID column. fill ID . Column name numeric index. Default \"1\", first column. instance.name","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/wide2long.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Alternative pivoting method for easily pivoting based on name pattern — wide2long","text":"","code":"data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_1\", \"height_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight height #> 1   1  71        0     95     NA #> 2   1  NA        1     98    179 #> 3   2  72        0     77     NA #> 4   2  NA        1     98    182 #> 5   3  70        0     85     NA #> 6   3  NA        1     74    197 #> 7   4  71        0     83     NA #> 8   4  NA        1     82    199 #> 9   5  72        0     90     NA #> 10  5  NA        1     88    179 #> 11  6  75        0     94     NA #> 12  6  NA        1     94    175 #> 13  7  74        0     75     NA #> 14  7  NA        1    100    179 #> 15  8  71        0     91     NA #> 16  8  NA        1     83    195 #> 17  9  78        0     77     NA #> 18  9  NA        1     96    176 #> 19 10  79        0     90     NA #> 20 10  NA        1     92    187 #> 21 11  78        0     93     NA #> 22 11  NA        1     96    188 #> 23 12  71        0     72     NA #> 24 12  NA        1     73    193 #> 25 13  71        0     77     NA #> 26 13  NA        1     89    187 #> 27 14  76        0     74     NA #> 28 14  NA        1    100    192 #> 29 15  73        0     83     NA #> 30 15  NA        1     96    190 #> 31 16  75        0     96     NA #> 32 16  NA        1     82    183 #> 33 17  71        0     82     NA #> 34 17  NA        1     72    192 #> 35 18  76        0     88     NA #> 36 18  NA        1     77    195 #> 37 19  78        0     72     NA #> 38 19  NA        1     93    184 #> 39 20  75        0     97     NA #> 40 20  NA        1     98    198 data.frame(   1:20, sample(70:80, 20, TRUE),   sample(70:100, 20, TRUE),   sample(70:100, 20, TRUE),   sample(170:200, 20, TRUE) ) |>   setNames(c(\"id\", \"age\", \"weight_0\", \"weight_a_1\", \"height_b_1\")) |>   wide2long(pattern = c(\"_0\", \"_1\"), type = \"suffix\") #>    id age instance weight weight_a height_b #> 1   1  79        0     75       NA       NA #> 2   1  NA        1     NA       71      171 #> 3   2  74        0     93       NA       NA #> 4   2  NA        1     NA       97      199 #> 5   3  75        0     95       NA       NA #> 6   3  NA        1     NA       81      192 #> 7   4  70        0     97       NA       NA #> 8   4  NA        1     NA       75      195 #> 9   5  70        0     77       NA       NA #> 10  5  NA        1     NA       83      191 #> 11  6  75        0     90       NA       NA #> 12  6  NA        1     NA       95      178 #> 13  7  75        0     76       NA       NA #> 14  7  NA        1     NA       78      200 #> 15  8  79        0     72       NA       NA #> 16  8  NA        1     NA       76      185 #> 17  9  75        0     79       NA       NA #> 18  9  NA        1     NA       88      195 #> 19 10  78        0     70       NA       NA #> 20 10  NA        1     NA       74      199 #> 21 11  70        0     99       NA       NA #> 22 11  NA        1     NA       86      176 #> 23 12  77        0     74       NA       NA #> 24 12  NA        1     NA       78      174 #> 25 13  75        0     74       NA       NA #> 26 13  NA        1     NA       91      192 #> 27 14  70        0     73       NA       NA #> 28 14  NA        1     NA       81      176 #> 29 15  79        0     80       NA       NA #> 30 15  NA        1     NA       91      176 #> 31 16  72        0     78       NA       NA #> 32 16  NA        1     NA       94      181 #> 33 17  77        0     71       NA       NA #> 34 17  NA        1     NA       82      181 #> 35 18  80        0     97       NA       NA #> 36 18  NA        1     NA       81      200 #> 37 19  80        0     79       NA       NA #> 38 19  NA        1     NA       72      195 #> 39 20  74        0     71       NA       NA #> 40 20  NA        1     NA       77      171 # Optional filling of missing values by last observation carried forward # Needed for mmrm analyses long_missings |>   # Fills record ID assuming none are missing   tidyr::fill(record_id) |>   # Grouping by ID for the last step   dplyr::group_by(record_id) |>   # Filling missing data by ID   tidyr::fill(names(long_missings)[!names(long_missings) %in% new_names]) |>   # Remove grouping   dplyr::ungroup() #> Error: object 'long_missings' not found"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"Wrapper save data RDS, load specified qmd render","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"","code":"write_quarto(data, ...)"},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"data list pass qmd ... Passed quarto::quarto_render()","code":""},{"path":"https://agdamsbo.github.io/freesearcheR/reference/write_quarto.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper to save data in RDS, load into specified qmd and render — write_quarto","text":"output file name","code":""}]
diff --git a/sitemap.xml b/sitemap.xml
index 3c8e0fd..1297192 100644
--- a/sitemap.xml
+++ b/sitemap.xml
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-<url><loc>https://agdamsbo.github.io/freesearcheR/articles/freesearcheR.html</loc></url>
+<url><loc>https://agdamsbo.github.io/freesearcheR/articles/FreesearchR.html</loc></url>
 <url><loc>https://agdamsbo.github.io/freesearcheR/articles/index.html</loc></url>
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 <url><loc>https://agdamsbo.github.io/freesearcheR/index.html</loc></url>
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 <url><loc>https://agdamsbo.github.io/freesearcheR/reference/is_valid_token.html</loc></url>
-<url><loc>https://agdamsbo.github.io/freesearcheR/reference/launch_freesearcheR.html</loc></url>
+<url><loc>https://agdamsbo.github.io/freesearcheR/reference/launch_FreesearchR.html</loc></url>
 <url><loc>https://agdamsbo.github.io/freesearcheR/reference/line_break.html</loc></url>
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 <url><loc>https://agdamsbo.github.io/freesearcheR/reference/merge_long.html</loc></url>
@@ -73,7 +73,6 @@
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