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Andreas Gammelgaard Damsbo 2025-01-15 16:21:38 +01:00
commit ce2558fe90
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19 changed files with 3825 additions and 529 deletions
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35
R/redcap_read_shiny_module.R
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@ -10,8 +10,8 @@
m_redcap_readUI <- function(id, include_title = TRUE) {
ns <- shiny::NS(id)
server_ui <- shiny::column(
width = 6,
server_ui <- shiny::tagList(
# width = 6,
shiny::tags$h4("REDCap server information"),
shiny::textInput(
inputId = ns("uri"),
@ -27,8 +27,8 @@ m_redcap_readUI <- function(id, include_title = TRUE) {
params_ui <-
shiny::column(
width = 6,
shiny::tagList(
# width = 6,
shiny::tags$h4("Data import parameters"),
shiny::helpText("Options here will show, when API and uri are typed"),
shiny::uiOutput(outputId = ns("fields")),
@ -63,9 +63,14 @@ m_redcap_readUI <- function(id, include_title = TRUE) {
shiny::fluidPage(
if (include_title) shiny::tags$h3("Import data from REDCap"),
fluidRow(
bslib::layout_columns(
server_ui,
params_ui),
params_ui,
col_widths = bslib::breakpoints(
sm = c(12, 12),
md = c(12, 12)
)
),
shiny::column(
width = 12,
# shiny::actionButton(inputId = ns("import"), label = "Import"),
@ -75,8 +80,8 @@ m_redcap_readUI <- function(id, include_title = TRUE) {
icon = shiny::icon("download", lib = "glyphicon"),
label_busy = "Just a minute...",
icon_busy = fontawesome::fa_i("arrows-rotate",
class = "fa-spin",
"aria-hidden" = "true"
class = "fa-spin",
"aria-hidden" = "true"
),
type = "primary",
auto_reset = TRUE
@ -194,7 +199,7 @@ m_redcap_readServer <- function(id, output.format = c("df", "teal", "list")) {
# browser()
data.df <- dd()[, c(1, 2, 4, 5, 6, 8)]
DT::datatable(data.df,
caption = "Subset of data dictionary"
caption = "Subset of data dictionary"
)
},
server = TRUE
@ -241,8 +246,8 @@ m_redcap_readServer <- function(id, output.format = c("df", "teal", "list")) {
REDCapCAST::suffix2label()
out_object <- file_export(redcap_data,
output.format = output.format,
filename = name()
output.format = output.format,
filename = name()
)
if (output.format == "list") {
@ -270,7 +275,6 @@ m_redcap_readServer <- function(id, output.format = c("df", "teal", "list")) {
#'
#' @rdname redcap_read_shiny_module
tdm_redcap_read <- teal::teal_data_module(
ui <- function(id) {
shiny::fluidPage(
m_redcap_readUI(id)
@ -305,7 +309,7 @@ redcap_app <- function() {
)
)
server <- function(input, output, session) {
data_val <- shiny::reactiveValues(data=NULL)
data_val <- shiny::reactiveValues(data = NULL)
ds <- m_redcap_readServer("data", output.format = "df")
# output$redcap_prev <- DT::renderDT(
@ -328,8 +332,9 @@ redcap_app <- function() {
})
filtered_data <- IDEAFilter::IDEAFilter("data_filter",
data = ds,
verbose = FALSE)
data = ds,
verbose = FALSE
)
# filtered_data <- shiny::reactive({
# IDEAFilter::IDEAFilter("data_filter",