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Andreas Gammelgaard Damsbo 2025-01-15 16:21:38 +01:00
commit ce2558fe90
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19 changed files with 3825 additions and 529 deletions
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38
R/helpers.R
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@ -148,7 +148,7 @@ file_export <- function(data, output.format = c("df", "teal", "list"), filename,
teal_data(),
{
assign(name, value |>
dplyr::bind_cols() |>
dplyr::bind_cols(.name_repair = "unique_quiet") |>
default_parsing())
},
value = data,
@ -185,8 +185,42 @@ file_export <- function(data, output.format = c("df", "teal", "list"), filename,
#' default_parsing() |>
#' str()
default_parsing <- function(data) {
data |>
name_labels <- lapply(data,\(.x) REDCapCAST::get_attr(.x,attr = "label"))
out <- data |>
REDCapCAST::parse_data() |>
REDCapCAST::as_factor() |>
REDCapCAST::numchar2fct()
purrr::map2(out,name_labels,\(.x,.l){
if (!(is.na(.l) | .l=="")) {
REDCapCAST::set_attr(.x, .l, attr = "label")
} else {
attr(x = .x, which = "label") <- NULL
.x
}
# REDCapCAST::set_attr(data = .x, label = .l,attr = "label", overwrite = FALSE)
}) |> dplyr::bind_cols()
}
#' Remove NA labels
#'
#' @param data data
#'
#' @returns data.frame
#' @export
#'
#' @examples
#' ds <- mtcars |> lapply(\(.x) REDCapCAST::set_attr(.x,label=NA,attr = "label"))
#' ds |> remove_na_attr() |> str()
remove_na_attr <- function(data,attr="label"){
out <- data |> lapply(\(.x){
ls <- REDCapCAST::get_attr(data = .x,attr = attr)
if (is.na(ls) | ls == ""){
attr(x = .x, which = attr) <- NULL
}
.x
})
dplyr::bind_cols(out)
}