import code fix

NEWS.md

@@ -1,10 +1,12 @@
 # FreesearchR 25.5.1
 
-- *BUG*: correct export of single variable plot.
+- *FIX*: correct export of single variable plot.
 
-- Include app version in report for reference.
+- *NEW*: Include app version in report for reference.
 
-- Show progress on connecting to a REDCap database.
+- *NEW*: Show progress on connecting to a REDCap database.
+
+- *FIX*: Data import code export.
 
 # FreesearchR 25.4.5
 

SESSION.md

@@ -24,10 +24,8 @@
 |package       |loadedversion |date       |source         |
 |:-------------|:-------------|:----------|:--------------|
 |apexcharter   |0.4.4         |2024-09-06 |CRAN (R 4.4.1) |
-|askpass       |1.2.1         |2024-10-04 |CRAN (R 4.4.1) |
 |assertthat    |0.2.1         |2019-03-21 |CRAN (R 4.4.1) |
 |backports     |1.5.0         |2024-05-23 |CRAN (R 4.4.1) |
-|base64enc     |0.1-3         |2015-07-28 |CRAN (R 4.4.1) |
 |bayestestR    |0.15.3        |2025-04-28 |CRAN (R 4.4.1) |
 |bit           |4.6.0         |2025-03-06 |CRAN (R 4.4.1) |
 |bit64         |4.6.0-1       |2025-01-16 |CRAN (R 4.4.1) |
@@ -37,21 +35,14 @@
 |bsicons       |0.1.2         |2023-11-04 |CRAN (R 4.4.0) |
 |bslib         |0.9.0         |2025-01-30 |CRAN (R 4.4.1) |
 |cachem        |1.1.0         |2024-05-16 |CRAN (R 4.4.1) |
-|cards         |0.6.0         |2025-04-11 |CRAN (R 4.4.1) |
-|cardx         |0.2.4         |2025-04-12 |CRAN (R 4.4.1) |
 |cellranger    |1.1.0         |2016-07-27 |CRAN (R 4.4.0) |
-|cffr          |1.2.0         |2025-01-25 |CRAN (R 4.4.1) |
-|checkmate     |2.3.2         |2024-07-29 |CRAN (R 4.4.0) |
 |class         |7.3-23        |2025-01-01 |CRAN (R 4.4.1) |
 |classInt      |0.4-11        |2025-01-08 |CRAN (R 4.4.1) |
 |cli           |3.6.5         |2025-04-23 |CRAN (R 4.4.1) |
-|cluster       |2.1.8.1       |2025-03-12 |CRAN (R 4.4.1) |
-|colorspace    |2.1-1         |2024-07-26 |CRAN (R 4.4.1) |
 |commonmark    |1.9.5         |2025-03-17 |CRAN (R 4.4.1) |
 |correlation   |0.8.7         |2025-03-03 |CRAN (R 4.4.1) |
 |crayon        |1.5.3         |2024-06-20 |CRAN (R 4.4.1) |
 |crosstalk     |1.2.1         |2023-11-23 |CRAN (R 4.4.0) |
-|curl          |6.2.2         |2025-03-24 |CRAN (R 4.4.1) |
 |data.table    |1.17.0        |2025-02-22 |CRAN (R 4.4.1) |
 |datamods      |1.5.3         |2024-10-02 |CRAN (R 4.4.1) |
 |datawizard    |1.0.2         |2025-03-24 |CRAN (R 4.4.1) |
@@ -65,39 +56,28 @@
 |easystats     |0.7.4         |2025-02-06 |CRAN (R 4.4.1) |
 |effectsize    |1.0.0         |2024-12-10 |CRAN (R 4.4.1) |
 |ellipsis      |0.3.2         |2021-04-29 |CRAN (R 4.4.1) |
-|eulerr        |7.0.2         |2024-03-28 |CRAN (R 4.4.0) |
 |evaluate      |1.0.3         |2025-01-10 |CRAN (R 4.4.1) |
 |farver        |2.1.2         |2024-05-13 |CRAN (R 4.4.1) |
 |fastmap       |1.2.0         |2024-05-15 |CRAN (R 4.4.1) |
 |fontawesome   |0.5.3         |2024-11-16 |CRAN (R 4.4.1) |
 |forcats       |1.0.0         |2023-01-29 |CRAN (R 4.4.0) |
-|foreign       |0.8-90        |2025-03-31 |CRAN (R 4.4.1) |
-|Formula       |1.2-5         |2023-02-24 |CRAN (R 4.4.1) |
 |fs            |1.6.6         |2025-04-12 |CRAN (R 4.4.1) |
 |generics      |0.1.3         |2022-07-05 |CRAN (R 4.4.1) |
-|GenSA         |1.1.14.1      |2024-09-21 |CRAN (R 4.4.1) |
-|ggcorrplot    |0.1.4.1       |2023-09-05 |CRAN (R 4.4.0) |
-|ggforce       |0.4.2         |2024-02-19 |CRAN (R 4.4.0) |
 |ggplot2       |3.5.2         |2025-04-09 |CRAN (R 4.4.1) |
 |glue          |1.8.0         |2024-09-30 |CRAN (R 4.4.1) |
-|gridExtra     |2.3           |2017-09-09 |CRAN (R 4.4.1) |
 |gt            |1.0.0         |2025-04-05 |CRAN (R 4.4.1) |
 |gtable        |0.3.6         |2024-10-25 |CRAN (R 4.4.1) |
 |gtsummary     |2.2.0         |2025-04-14 |CRAN (R 4.4.1) |
 |haven         |2.5.4         |2023-11-30 |CRAN (R 4.4.0) |
 |here          |1.0.1         |2020-12-13 |CRAN (R 4.4.1) |
-|Hmisc         |5.2-3         |2025-03-16 |CRAN (R 4.4.1) |
 |hms           |1.1.3         |2023-03-21 |CRAN (R 4.4.0) |
-|htmlTable     |2.4.3         |2024-07-21 |CRAN (R 4.4.0) |
 |htmltools     |0.5.8.1       |2024-04-04 |CRAN (R 4.4.1) |
 |htmlwidgets   |1.6.4         |2023-12-06 |CRAN (R 4.4.0) |
 |httpuv        |1.6.16        |2025-04-16 |CRAN (R 4.4.1) |
-|httr          |1.4.7         |2023-08-15 |CRAN (R 4.4.0) |
 |IDEAFilter    |0.2.0         |2024-04-15 |CRAN (R 4.4.0) |
 |insight       |1.2.0         |2025-04-22 |CRAN (R 4.4.1) |
 |jquerylib     |0.1.4         |2021-04-26 |CRAN (R 4.4.0) |
 |jsonlite      |2.0.0         |2025-03-27 |CRAN (R 4.4.1) |
-|jsonvalidate  |1.5.0         |2025-02-07 |CRAN (R 4.4.1) |
 |KernSmooth    |2.23-26       |2025-01-01 |CRAN (R 4.4.1) |
 |keyring       |1.3.2         |2023-12-11 |CRAN (R 4.4.0) |
 |knitr         |1.50          |2025-03-16 |CRAN (R 4.4.1) |
@@ -105,10 +85,8 @@
 |later         |1.4.2         |2025-04-08 |CRAN (R 4.4.1) |
 |lattice       |0.22-7        |2025-04-02 |CRAN (R 4.4.1) |
 |lifecycle     |1.0.4         |2023-11-07 |CRAN (R 4.4.1) |
-|litedown      |0.7           |2025-04-08 |CRAN (R 4.4.1) |
 |lme4          |1.1-37        |2025-03-26 |CRAN (R 4.4.1) |
 |magrittr      |2.0.3         |2022-03-30 |CRAN (R 4.4.1) |
-|markdown      |2.0           |2025-03-23 |CRAN (R 4.4.1) |
 |MASS          |7.3-65        |2025-02-28 |CRAN (R 4.4.1) |
 |Matrix        |1.7-3         |2025-03-11 |CRAN (R 4.4.1) |
 |memoise       |2.0.1         |2021-11-26 |CRAN (R 4.4.0) |
@@ -118,8 +96,6 @@
 |modelbased    |0.10.0        |2025-03-10 |CRAN (R 4.4.1) |
 |nlme          |3.1-168       |2025-03-31 |CRAN (R 4.4.1) |
 |nloptr        |2.2.1         |2025-03-17 |CRAN (R 4.4.1) |
-|nnet          |7.3-20        |2025-01-01 |CRAN (R 4.4.1) |
-|openssl       |2.3.2         |2025-02-03 |CRAN (R 4.4.1) |
 |openxlsx2     |1.15          |2025-04-25 |CRAN (R 4.4.1) |
 |parameters    |0.24.2        |2025-03-04 |CRAN (R 4.4.1) |
 |patchwork     |1.3.0         |2024-09-16 |CRAN (R 4.4.1) |
@@ -129,9 +105,6 @@
 |pkgbuild      |1.4.7         |2025-03-24 |CRAN (R 4.4.1) |
 |pkgconfig     |2.0.3         |2019-09-22 |CRAN (R 4.4.1) |
 |pkgload       |1.4.0         |2024-06-28 |CRAN (R 4.4.0) |
-|plyr          |1.8.9         |2023-10-02 |CRAN (R 4.4.1) |
-|polyclip      |1.10-7        |2024-07-23 |CRAN (R 4.4.1) |
-|polylabelr    |0.3.0         |2024-11-19 |CRAN (R 4.4.1) |
 |processx      |3.8.6         |2025-02-21 |CRAN (R 4.4.1) |
 |profvis       |0.4.0         |2024-09-20 |CRAN (R 4.4.1) |
 |promises      |1.3.2         |2024-11-28 |CRAN (R 4.4.1) |
@@ -139,10 +112,6 @@
 |ps            |1.9.1         |2025-04-12 |CRAN (R 4.4.1) |
 |purrr         |1.0.4         |2025-02-05 |CRAN (R 4.4.1) |
 |quarto        |1.4.4         |2024-07-20 |CRAN (R 4.4.0) |
-|R.cache       |0.16.0        |2022-07-21 |CRAN (R 4.4.0) |
-|R.methodsS3   |1.8.2         |2022-06-13 |CRAN (R 4.4.1) |
-|R.oo          |1.27.0        |2024-11-01 |CRAN (R 4.4.1) |
-|R.utils       |2.13.0        |2025-02-24 |CRAN (R 4.4.1) |
 |R6            |2.6.1         |2025-02-15 |CRAN (R 4.4.1) |
 |ragg          |1.4.0         |2025-04-10 |CRAN (R 4.4.1) |
 |rankinPlot    |1.1.0         |2023-01-30 |CRAN (R 4.4.0) |
@@ -161,12 +130,9 @@
 |rempsyc       |0.1.9         |2025-02-01 |CRAN (R 4.4.1) |
 |renv          |1.1.4         |2025-03-20 |CRAN (R 4.4.1) |
 |report        |0.6.1         |2025-02-07 |CRAN (R 4.4.1) |
-|reshape2      |1.4.4         |2020-04-09 |CRAN (R 4.4.0) |
 |rio           |1.2.3         |2024-09-25 |CRAN (R 4.4.1) |
 |rlang         |1.1.6         |2025-04-11 |CRAN (R 4.4.1) |
 |rmarkdown     |2.29          |2024-11-04 |CRAN (R 4.4.1) |
-|roxygen2      |7.3.2         |2024-06-28 |CRAN (R 4.4.0) |
-|rpart         |4.1.24        |2025-01-07 |CRAN (R 4.4.1) |
 |rprojroot     |2.0.4         |2023-11-05 |CRAN (R 4.4.1) |
 |rsconnect     |1.3.4         |2025-01-22 |CRAN (R 4.4.1) |
 |rstudioapi    |0.17.1        |2024-10-22 |CRAN (R 4.4.1) |
@@ -179,19 +145,15 @@
 |shinyTime     |1.0.3         |2022-08-19 |CRAN (R 4.4.0) |
 |shinyWidgets  |0.9.0         |2025-02-21 |CRAN (R 4.4.1) |
 |stringi       |1.8.7         |2025-03-27 |CRAN (R 4.4.1) |
-|stringr       |1.5.1         |2023-11-14 |CRAN (R 4.4.0) |
-|styler        |1.10.3        |2024-04-07 |CRAN (R 4.4.0) |
 |systemfonts   |1.2.2         |2025-04-04 |CRAN (R 4.4.1) |
 |textshaping   |1.0.0         |2025-01-20 |CRAN (R 4.4.1) |
 |tibble        |3.2.1         |2023-03-20 |CRAN (R 4.4.0) |
 |tidyr         |1.3.1         |2024-01-24 |CRAN (R 4.4.1) |
 |tidyselect    |1.2.1         |2024-03-11 |CRAN (R 4.4.0) |
 |toastui       |0.4.0         |2025-04-03 |CRAN (R 4.4.1) |
-|tweenr        |2.0.3         |2024-02-26 |CRAN (R 4.4.0) |
 |tzdb          |0.5.0         |2025-03-15 |CRAN (R 4.4.1) |
 |urlchecker    |1.0.1         |2021-11-30 |CRAN (R 4.4.1) |
 |usethis       |3.1.0         |2024-11-26 |CRAN (R 4.4.1) |
-|V8            |6.0.3         |2025-03-26 |CRAN (R 4.4.1) |
 |vctrs         |0.6.5         |2023-12-01 |CRAN (R 4.4.0) |
 |viridisLite   |0.4.2         |2023-05-02 |CRAN (R 4.4.1) |
 |vroom         |1.6.5         |2023-12-05 |CRAN (R 4.4.0) |

inst/apps/FreesearchR/app.R

@@ -9438,8 +9438,8 @@ ui_elements <- list(
               width = 9,
               shiny::tags$p(
                 shiny::markdown("Below, are several options for simple data manipulation like update variables by renaming, creating new labels (for nicer tables in the report) and changing variable classes (numeric, factor/categorical etc.)."),
-                shiny::markdown("There are also more advanced options to modify factor/categorical variables as well as create new factor from a continous variable or new variables with *R* code. At the bottom you can restore the original data."),
+                shiny::markdown("There are more advanced options to modify factor/categorical variables as well as create new factor from a continous variable or new variables with *R* code. At the bottom you can restore the original data."),
-                shiny::markdown("Please note that data modifications are applied before any data or variable filtering is applied.")
+                shiny::markdown("Please note that data modifications are applied before any filtering.")
               )
             )
           ),
@@ -10293,10 +10293,12 @@ server <- function(input, output, session) {
   # })
 
   output$code_import <- shiny::renderUI({
+    shiny::req(rv$code$import)
     prismCodeBlock(paste0("#Data import\n", rv$code$import))
   })
 
-  output$code_import <- shiny::renderUI({
+  output$code_format <- shiny::renderUI({
+    shiny::req(rv$code$format)
     prismCodeBlock(paste0("#Data import formatting\n", rv$code$format))
   })